FF:10165-103B3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005792 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10036;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.NCig10036.10165-103B3.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008677;DRR009549;DRZ000974;DRZ002359;DRZ012324;DRZ013709 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0002148,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0006331,UBERON:0009662,UBERON:0000125,UBERON:0002020,UBERON:0010317,UBERON:0002308,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011487 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/locus%2520coeruleus%252c%2520adult%252c%2520donor10252.CNhs12322.10165-103B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10165-103B3 | |id=FF:10165-103B3 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0011487 | ||
|is_obsolete= | |||
|library_id=CNhs12322 | |||
|library_id_phase_based=2:CNhs12322 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10165 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10165 | |||
|name=locus coeruleus, adult, donor10252 | |name=locus coeruleus, adult, donor10252 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10036,,, | |profile_cagescan=NCig10036,,, | ||
|profile_hcage=CNhs12322,LSID913,release011,COMPLETED | |profile_hcage=CNhs12322,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0.0539356558948951,0,0,0,0,0.145102450696258,0,-0.106382374191491,0.253676102438086,0.268244239109214,0.505682933119227,0,0,0,0,0,0,0,0,0,0.220412251543007,0.0539356558948951,0,0,0.187139629172482,0,0.425099413641477,0,0.429116129618265,0,0.155718206170028,0,0,0.120719512659224,0,0,0,0,0,0,0.0269678279474476,0,0,0,0.145102450696258,0,0.0565002677456521,0.253676102438086,0.0539356558948951,0,0,0,0,0,0,0.158746572727704,0.0539356558948951,0.101906882599192,0,0.606526446839787,0,0.208195392738176,0.0539356558948951,0.448614010060123,0,0,0.315417751149881,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145102450696258,0,0,0.119138694051048,0,0.1611595670711,0,0.0539356558948951,0.0611761501701418,0,0.201093957049155,0.402263266410593,0.489387191539985,0,0.279613967335788,0.351379032371332,0.247054843561021,0.072551225348129,0.220412251543007,0.0539356558948951,0,0.215380646117114,0.399733235263818,0,0,0,0,0,0,0,0,0,0.0269678279474476,0,0.145102450696258,0,0,0,0,0,0.030464457296582,0.220412251543007,0,0,0.129591085549122,0.123480322458976,0.0539356558948951,0.0539356558948951,0.101906882599192,0.160736989056419,0,0 | |||
|repeat_enrich_byname=0.140664119500588,0,0,0,0.215380646117114,0.577133719681981,0,0.220412251543007,0.0539356558948951,0.101906882599192,0.145102450696258,0.833671932383712,0.0539356558948951,0.220412251543007,0,0,0.165582503077414,0.145102450696258,0.519772386580402,-0.0416082599242803,0.050953441299596,0,0.347479385151516,0,0.365923187681077,0.184387717880323,0.455036276830013,0.220412251543007,0.511609900507241,0.184387717880323,0.253676102438086,0.253676102438086,-0.0741842110576696,0,1.0373607461194,0.369804358475716,0,0.0539356558948951,0,0.108212770135192,0.28660646465542,0,0.242577905042346,0.47726211022536,0,0.0539356558948951,0,0.253676102438086,0.406097775537996,0.127545332833166,0.291881894569238,0.462886202979311,1.45692166201365,0.0608901030838059,0.266611338462441,0.0539356558948951,0.0015729853018182,0,0.717348934547009,0.055085505435067,0,0,0.682009729558525,0.579914790509759,0,0.145102450696258,0.475075204754625,0,0.286525057836272,-0.123676470030439,0,0.155788927372343,0,0,0.101906882599192,0,0,0.34046263952091,0,0.284572440121419,0.474724444762501,0,0,0.312310891654279,-0.0135725993241484,0.0113179273752256,0,0.145102450696258,0,0.436610995460412,0.0539356558948951,0.18900689717724,-0.228183705260308,-0.0642548961246932,0.260931099883652,-0.0503285666471633,0.101906882599192,0.563730059296347,0.355801318767061,0.421181226977266,0.302307457082801,0.582060674926082,0.265054557280166,0.0642792524540026,0.435213936224743,0.177440668227679,0.303693971881417,0.0354861153655259,-0.0343132943083216,0.207078784425458,0.402467292029105,0.101906882599192,0.145102450696258,0.0539356558948951,0.528103754729979,0.16199422007577,0.0904100229315687,0.0715413568448321,0.904793179367041,0.496651179101043,0.393537850470018,0.309118090747783,-0.298761351628211,1.56742108330696,0.547917807880101,0.160557781677615,0.29956643651469,0.370655986814758,0.365923187681077,0.220412251543007,0.290079501130334,-0.179385660267536,-0.070219801875951,0.147074232862884,0.150077908942789,0.47726211022536,0.522185126688193,0.335368912952903,-0.0197828604347823,0.145102450696258,0.184387717880323,0.150685293425809,0.284572440121419,0,-0.178109914966818,0.284771775285957,0.816491147888143,0.0610617157825986,0.959448452642738,0.157117846718964,0.202072630157034,0.536733913689804,0.0992301307295726,0.0560931806563453,0.145102450696258,0.100623048124166,0.0383778204229284,0.230866553120478,-0.00806136447481737,0.15421435551952,0.302924009096075,0.11097709807316,0.0578359358576774,0.273697435579036,1.46868602682958,0.127760325460798,0.279613967335788,-0.161548386307932,0.0612589624927267,0.271432322836404,0.985337586352667,0.351424356121638,0.577369306112718,0.85272292781857,0.315603719112673,0.1796003387765,0.0512308579926009,0.174272985917408,1.61904539622545,0.122442868468032,0,0.183690225468751,0.10675820887974,0.82681769582695,0.177891368224051,0.109694248989495,0.209031982956621,0.575158387967909,0.111552473556232,0.0609267647290576,0.0820415385830449,0.0539356558948951,-0.0964314274397442,0.701394847313531,0.682302660814398,0.405845629430081,0,0.179831922598187,1.14071421700499,0.976023631625429,0.400135375902851,0.472026915758337,0.145102450696258,-0.145078302413539,-0.00267646737360971,0.135823449236649,0.0684166444453885,0.253676102438086,0,0.152902254128702,0.283048275542247,0.620508996650214,-0.131203619055529,0.484852304557561,0.402263266410593,0.393865618866224,0.199389276567172,0.448866744752444,0.180768193979147,0.412761378362978,0.0761483364729101,0.545606371302728,0.240655012852439,0.00294139222801404,0,0.0486932515228266,0,0.0976098250315967,0.508276729822975,1.88816944382058,0.173324882567278,0.0539356558948951,0,0,0,0,0,0.132462338921985,0.266845792731057,0.363788188774421,0.184387717880323,-0.252292257484335,0,0,0.0539356558948951,0,0,0.184387717880323,0.0828092236716846,0.0539356558948951,-0.862868314522456,0.0373419269615226,-0.0211105330772287,0.0269678279474476,0.34046263952091,0.0269678279474476,0.101906882599192,0.783921065245314,0.050439540343362,0.253676102438086,0.121813395940454,0.0539356558948951,0.0269678279474476,0,0.253676102438086,0.167535112648874,0,0,0,0.0539356558948951,0.416993987708837,0.05841424566082,0,0,0.0921938589401615,0.654364019831377,0.63405537075377,0.145102450696258,0,0.162908859921746,0.142720005716725,0,0.137498816023498,0.474724444762501,0.155299452432571,0.15051222633181,1.0632660487598,0.119614985575116,-0.315580100533861,-1.36912761775749,-0.181548707688257,0.145102450696258,0,0.446155821732838,0,0,-0.306481797336027,0.101906882599192,0.145102450696258,0.200839322922835,0,0.101906882599192,0,0.101906882599192,0.306029062633764,0.0539356558948951,0.377764183154071,0.213706230292335,0.0539356558948951,0.075742944605767,0.101906882599192,0,0.52894070548177,0,0.220412251543007,0,0.0539356558948951,0.184387717880323,0.152074058423947,0.273699131022566,0.0539356558948951,0,0.0539356558948951,0.0539356558948951,0.0539356558948951,0.257334130481085,0.220412251543007,0.029829632815992,0.28436128328626,0.0539356558948951,0,0,0,0,0,0.160736989056419,0.0539356558948951,-0.105502751982166,0,0,0.145102450696258,0.101906882599192,0,0.448614010060123,0.0539356558948951,0.145102450696258,0,0,0.790953614695446,0.0539356558948951,0,0.268244239109214,0.0539356558948951,0.0539356558948951,0.0748285963371489,0,0.0539356558948951,0.0539356558948951,0.0930946858101467,0.0880417766557999,0.0539356558948951,0,0.101906882599192,0,0.0539356558948951,-0.0693834301405526,0.161334078559707,0,0.284572440121419,0.0539356558948951,0,0,0.253676102438086,0.0749122587093543,0.583398961030439,0.0539356558948951,0.220412251543007,0.0539356558948951,0.0539356558948951,-0.0119774911097856,0,0.0539356558948951,0,-0.00288950218996485,0,-0.106382374191491,0.145102450696258,0,0,0.110206125771504,0,0,0.0269678279474476,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0.119161686887609,0,0.101906882599192,-0.600471829029599,0.305192829908758,0.720509963568601,0.188898740920324,0,0.0539356558948951,0.0634109951438715,0,0,0,0,0,0,0.0412108013196021,0.0997621108794544,0,0,0,0,0,0,0,0.050953441299596,0,0,0,0,0,0,0,0,0,0.220412251543007,0,0,0,0,0,0.182961593840539,0.108289256434669,0,0,0,0,0,0,0,0.155718206170028,0,0,0.207738203798286,0.0539356558948951,0.101906882599192,0.0539356558948951,0.101906882599192,0,0.141217514090056,0.120739380120361,0.189791056762339,0.257721672935133,0,0.101906882599192,0.313415997354821,0.408138370983208,0.606526446839787,0.119911597633612,0.144798982538617,0.0539356558948951,0.273685252102009,0,0,0,0.0815760034497627,0.1611595670711,0,0,0,0.145102450696258,0,0,0,0,0,0,0,0.145102450696258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0.187139629172482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0,0.351694702814665,0,0,0.0539356558948951,0,0,0,0.0439099059716268,0.0539356558948951,0,0,0.0539356558948951,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0.0539356558948951,0.30995494000587,0,0,0,0.24195004717297,0,0,0,0,0,0.0654935913177278,0.184387717880323,0,0.365923187681077,0,0,0,0,0.0269678279474476,0,0,0,0,0,0,0.34046263952091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284572440121419,0,0.0539356558948951,0,0.278944746455828,0,0,0,0,0,0,0,0,0.145102450696258,0,0.118872392827157,0,0,0.205454027199032,0,0.169299470208059,0,0,0,0,0,0,0,0,0,0.101906882599192,0,0.253676102438086,0,0,0,0.0539356558948951,0.189535447916232,0,0,0,0,0.365124267702059,0,0,0,0.0269678279474476,0,0,0,0.417812704660508,0,0,0,0.0539356558948951,0,0,0,0,0,0,0.0269678279474476,0,0,0.275330097193265,0,0,-0.153283394434664,0,0.0539356558948951,0.0539356558948951,0.0269678279474476,0,0,0.050953441299596,0,0,0,0.0269678279474476,0,0.159092072392881,0,0,0,0,0,0,0,0,0,0,0.317493145455408,0,0,0,0.0539356558948951,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101906882599192,0,0,0,0,0,0.156707998677411,0.136607948684591,0.123480322458976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0779212692470436,0,0,0.0269678279474476,0,0,0,0,0,0,0,0,0,0,0,0.0269678279474476,0,0.114272721457402,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269678279474476,0,0,0.0624969365674855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101906882599192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220412251543007,0,0,0,0,0,0,0,0,0,0,0,0,0.68286571704845,0,0,0,0,0,0,0.072551225348129,0,0,0.0539356558948951,0,0.85823225923653,0,0,0,0,0,0,0,0,0,0.050953441299596,0,0.0539356558948951,0,0,0,0,0,0,0.813885870453865,0,0,0,0,0,0,0,0,0.101906882599192,0,0,0,0,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0.158237220198163,0,0,0,0.072551225348129,0,0,0,0,0,0,0,0,0,0.0530011853736387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101906882599192,0,0,0.0269678279474476,0.145102450696258,0,0,0,0.0779212692470436,0,0.0609289145931639,0,0,0,0.425099413641477,0,0,0,0,0,0,0.561656071321606,0,0,0,0,0,0,0,0.050953441299596,0.0269678279474476,0,0,0,0,0,0,0,0,0.137173953718951,0,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269678279474476,0,0,0,0.123591621374295,0,0,0,0,0,0,0,0.217766642523909,0.220412251543007,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101906882599192,0.101906882599192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0488114418305673,0,0.0269678279474476,0,0,0,0,0,0,0,0,0,0,0,0,0.414766762383947,0,0,0.124991412629027,0,0,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0,0.101906882599192,0,0,0,0.0221648839342135,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473735684054296,0,0,0,0,0.315417751149881,0,0.14228622006071,0,0,0,0.050953441299596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120719512659224,0,0,0,0,0,0,0,0,0,0,0,0.284572440121419,0,0,0,0.280828035660803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0229701545741389,0,0,0,0,0,0.313415997354821,0,0,0,0,0.0689560342436965,0,0,0,0,0.145102450696258,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.469245705947653,0,0.0995190532955765,0.0596194141220757,0.118627966099637,0.100704409037688,-0.0477559122949713,0,0,0,0,0.101906882599192,0.0539356558948951,0,0,0,0,0,0,0,0,0,0,0.06183063487466,0,0,0.0838462586361564,0,0,1.05362166104868,0,0,0,0,0,0,0,0,0,0,0.0539356558948951,0,0,0,0,0,0,0,0,0.0921938589401615,0.00450034479845274,0,0.127423226232757,0.476791925477622,0,0.0539356558948951,-0.000956681616039498,0.0539356558948951,0,0.474724444762501,0,0.0539356558948951,0.749546150502532,-0.0169451768789104,0.0539356558948951,0.52894070548177,0,0,0,0,0.370019745215972,0,0,0.101906882599192,0,0.0539356558948951,0,0,0.0610773578595181,0.412761378362978,0.220412251543007,0.101906882599192,0.256557051192221,0.292180435727037,0.474724444762501,0.736213697715314,0,0,1.56510641921544,0,0,0,0.465696663948019 | |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=30.711 | |rna_weight_ug=30.711 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.53126589029404e-263!GO:0005737;cytoplasm;3.93751772230532e-163!GO:0043226;organelle;8.07103275077098e-109!GO:0044444;cytoplasmic part;1.17869949406554e-108!GO:0043229;intracellular organelle;2.00621701641082e-108!GO:0043227;membrane-bound organelle;1.97197773011295e-101!GO:0043231;intracellular membrane-bound organelle;3.00308368654216e-101!GO:0005515;protein binding;1.32915305975897e-70!GO:0044422;organelle part;1.23782095723969e-69!GO:0044446;intracellular organelle part;1.65011677594589e-68!GO:0032991;macromolecular complex;1.90486694602288e-60!GO:0016043;cellular component organization and biogenesis;6.17492958397353e-46!GO:0005739;mitochondrion;2.75101907133654e-43!GO:0030529;ribonucleoprotein complex;5.85465693419328e-43!GO:0003723;RNA binding;1.34034858400478e-40!GO:0033036;macromolecule localization;3.7164856910298e-39!GO:0015031;protein transport;7.08311072182811e-38!GO:0031090;organelle membrane;1.00768085696123e-37!GO:0008104;protein localization;6.07112138434598e-36!GO:0045184;establishment of protein localization;2.22877297528786e-35!GO:0043233;organelle lumen;2.22877297528786e-35!GO:0031974;membrane-enclosed lumen;2.22877297528786e-35!GO:0044428;nuclear part;1.93530691471405e-33!GO:0043234;protein complex;9.33804585852895e-33!GO:0046907;intracellular transport;6.65271644128211e-32!GO:0044238;primary metabolic process;1.63005025061257e-31!GO:0044429;mitochondrial part;1.84915519572264e-30!GO:0044237;cellular metabolic process;2.13110711978059e-29!GO:0031975;envelope;2.37209176860493e-28!GO:0031967;organelle envelope;3.62059268013486e-28!GO:0051649;establishment of cellular localization;4.45047371838667e-28!GO:0051641;cellular localization;5.86541274071346e-28!GO:0005829;cytosol;1.14986428981704e-27!GO:0016071;mRNA metabolic process;6.50804710600523e-27!GO:0043170;macromolecule metabolic process;1.54379992892111e-26!GO:0016192;vesicle-mediated transport;1.54379992892111e-26!GO:0019538;protein metabolic process;5.13650709889406e-26!GO:0005634;nucleus;6.49871092543316e-25!GO:0006396;RNA processing;2.0770539074e-24!GO:0008380;RNA splicing;6.31996695430458e-24!GO:0006886;intracellular protein transport;3.70220467687549e-23!GO:0005840;ribosome;6.85327406701159e-23!GO:0044260;cellular macromolecule metabolic process;2.95795179468953e-22!GO:0005740;mitochondrial envelope;5.97782103407725e-22!GO:0006397;mRNA processing;6.96564384975299e-22!GO:0044267;cellular protein metabolic process;1.76679915630086e-21!GO:0031966;mitochondrial membrane;2.97925253816779e-21!GO:0006119;oxidative phosphorylation;1.11988276207431e-20!GO:0031981;nuclear lumen;2.08303365714474e-20!GO:0006996;organelle organization and biogenesis;2.38134553073807e-20!GO:0006412;translation;3.77230912091035e-20!GO:0019866;organelle inner membrane;7.63556578697743e-20!GO:0009058;biosynthetic process;1.36209259389108e-19!GO:0005794;Golgi apparatus;1.57527395790349e-19!GO:0005743;mitochondrial inner membrane;7.69175123474491e-19!GO:0031982;vesicle;1.03344543443136e-18!GO:0065003;macromolecular complex assembly;5.71292043716796e-18!GO:0003735;structural constituent of ribosome;5.75313774278032e-18!GO:0031410;cytoplasmic vesicle;6.17927940108616e-18!GO:0000166;nucleotide binding;4.08546497029065e-17!GO:0031988;membrane-bound vesicle;1.05125333702015e-16!GO:0005681;spliceosome;2.02413945637972e-16!GO:0044249;cellular biosynthetic process;4.21757335954115e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.66024278424638e-16!GO:0016023;cytoplasmic membrane-bound vesicle;5.50585282292051e-16!GO:0022607;cellular component assembly;5.88118471277927e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;5.90291650910696e-16!GO:0016462;pyrophosphatase activity;6.05361369855576e-16!GO:0044455;mitochondrial membrane part;6.31893672961898e-16!GO:0033279;ribosomal subunit;1.15323579188274e-15!GO:0009059;macromolecule biosynthetic process;2.13548286865892e-15!GO:0017111;nucleoside-triphosphatase activity;5.64758278864155e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08580976061314e-14!GO:0043283;biopolymer metabolic process;1.29230006541219e-14!GO:0005746;mitochondrial respiratory chain;1.50420079772685e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.03418331066083e-14!GO:0003954;NADH dehydrogenase activity;2.03418331066083e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.03418331066083e-14!GO:0012505;endomembrane system;2.63644646190575e-14!GO:0006457;protein folding;1.70134570210182e-13!GO:0005654;nucleoplasm;3.0743628239527e-13!GO:0016874;ligase activity;8.46513286269615e-13!GO:0010467;gene expression;1.12717191921038e-12!GO:0048770;pigment granule;1.21612374790703e-12!GO:0042470;melanosome;1.21612374790703e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.61788398002391e-12!GO:0045271;respiratory chain complex I;1.61788398002391e-12!GO:0005747;mitochondrial respiratory chain complex I;1.61788398002391e-12!GO:0006512;ubiquitin cycle;1.79497208926411e-12!GO:0044445;cytosolic part;2.59209772821071e-12!GO:0032553;ribonucleotide binding;3.51912275154688e-12!GO:0032555;purine ribonucleotide binding;3.51912275154688e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.00558456696376e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.54591234757637e-12!GO:0042773;ATP synthesis coupled electron transport;4.54591234757637e-12!GO:0044451;nucleoplasm part;4.55547776525262e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.98036109455198e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;5.3589428106233e-12!GO:0006511;ubiquitin-dependent protein catabolic process;6.26644870279713e-12!GO:0019941;modification-dependent protein catabolic process;9.40824028064535e-12!GO:0043632;modification-dependent macromolecule catabolic process;9.40824028064535e-12!GO:0044257;cellular protein catabolic process;1.07421897157018e-11!GO:0044265;cellular macromolecule catabolic process;1.3237411738984e-11!GO:0043228;non-membrane-bound organelle;1.5403870696496e-11!GO:0043232;intracellular non-membrane-bound organelle;1.5403870696496e-11!GO:0017076;purine nucleotide binding;1.57911493011712e-11!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.95467276138271e-11!GO:0031980;mitochondrial lumen;3.95810842088646e-11!GO:0005759;mitochondrial matrix;3.95810842088646e-11!GO:0051082;unfolded protein binding;4.95917961038639e-11!GO:0043412;biopolymer modification;4.95917961038639e-11!GO:0000502;proteasome complex (sensu Eukaryota);5.80091744215558e-11!GO:0008134;transcription factor binding;6.69926794044288e-11!GO:0003924;GTPase activity;7.33764523941191e-11!GO:0048193;Golgi vesicle transport;1.34356296824692e-10!GO:0022618;protein-RNA complex assembly;1.35833112933724e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.62236002443558e-10!GO:0007264;small GTPase mediated signal transduction;1.62236002443558e-10!GO:0006464;protein modification process;1.75035447634037e-10!GO:0005768;endosome;1.81075983828744e-10!GO:0043687;post-translational protein modification;2.10725817716124e-10!GO:0006605;protein targeting;2.61015163044215e-10!GO:0005783;endoplasmic reticulum;2.73390218610118e-10!GO:0030695;GTPase regulator activity;3.02731571147881e-10!GO:0016044;membrane organization and biogenesis;3.86981276661835e-10!GO:0008565;protein transporter activity;4.05414665472466e-10!GO:0044248;cellular catabolic process;4.99504077316434e-10!GO:0043285;biopolymer catabolic process;5.92520180672884e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.71321241896806e-10!GO:0045045;secretory pathway;6.88215832512848e-10!GO:0005525;GTP binding;1.61504495706788e-09!GO:0008135;translation factor activity, nucleic acid binding;2.88147829156285e-09!GO:0030163;protein catabolic process;3.05101574278397e-09!GO:0008092;cytoskeletal protein binding;4.23976654163525e-09!GO:0007010;cytoskeleton organization and biogenesis;5.05062955524846e-09!GO:0019829;cation-transporting ATPase activity;5.07619003199181e-09!GO:0006461;protein complex assembly;7.37984199122459e-09!GO:0009057;macromolecule catabolic process;1.02840768584727e-08!GO:0015935;small ribosomal subunit;1.22740196463845e-08!GO:0016604;nuclear body;1.37118981036698e-08!GO:0005083;small GTPase regulator activity;1.55675201262243e-08!GO:0006793;phosphorus metabolic process;1.58832056511895e-08!GO:0006796;phosphate metabolic process;1.58832056511895e-08!GO:0048523;negative regulation of cellular process;1.64641029281121e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.68142080262327e-08!GO:0030036;actin cytoskeleton organization and biogenesis;3.09354264234948e-08!GO:0016607;nuclear speck;5.94398956413978e-08!GO:0051186;cofactor metabolic process;6.00899574429148e-08!GO:0044431;Golgi apparatus part;6.6602764748914e-08!GO:0006810;transport;6.6602764748914e-08!GO:0032561;guanyl ribonucleotide binding;6.8811504179737e-08!GO:0019001;guanyl nucleotide binding;6.8811504179737e-08!GO:0015986;ATP synthesis coupled proton transport;7.10130554481498e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.10130554481498e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;7.11565445973619e-08!GO:0000375;RNA splicing, via transesterification reactions;7.11565445973619e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.11565445973619e-08!GO:0015934;large ribosomal subunit;7.94983101419989e-08!GO:0031252;leading edge;1.24836179004488e-07!GO:0019899;enzyme binding;2.03109336665833e-07!GO:0006446;regulation of translational initiation;2.16467779959163e-07!GO:0030135;coated vesicle;2.26708901504214e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.4162571573563e-07!GO:0005635;nuclear envelope;2.5413955335498e-07!GO:0031965;nuclear membrane;3.08623284880724e-07!GO:0008639;small protein conjugating enzyme activity;3.11528162768428e-07!GO:0005730;nucleolus;3.32342652167574e-07!GO:0032940;secretion by cell;3.37163535663093e-07!GO:0019787;small conjugating protein ligase activity;3.84092024366296e-07!GO:0006897;endocytosis;3.86355871459581e-07!GO:0010324;membrane invagination;3.86355871459581e-07!GO:0015630;microtubule cytoskeleton;4.14268038708926e-07!GO:0030029;actin filament-based process;4.19834122001496e-07!GO:0004842;ubiquitin-protein ligase activity;4.46208671970408e-07!GO:0051179;localization;4.6613565032885e-07!GO:0048475;coated membrane;5.01502190343324e-07!GO:0030117;membrane coat;5.01502190343324e-07!GO:0003743;translation initiation factor activity;7.03332943947245e-07!GO:0048519;negative regulation of biological process;7.16789646132438e-07!GO:0006913;nucleocytoplasmic transport;9.03542115692304e-07!GO:0005761;mitochondrial ribosome;9.82670363133128e-07!GO:0000313;organellar ribosome;9.82670363133128e-07!GO:0006413;translational initiation;9.98512889958362e-07!GO:0046034;ATP metabolic process;1.00830919267261e-06!GO:0032559;adenyl ribonucleotide binding;1.01030307603195e-06!GO:0006163;purine nucleotide metabolic process;1.24430035774244e-06!GO:0009150;purine ribonucleotide metabolic process;1.25582985413266e-06!GO:0044432;endoplasmic reticulum part;1.26193304178196e-06!GO:0048471;perinuclear region of cytoplasm;1.32061623272139e-06!GO:0044440;endosomal part;1.35996935874477e-06!GO:0010008;endosome membrane;1.35996935874477e-06!GO:0051169;nuclear transport;1.43126294884816e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.46371098039806e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66779199366234e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.66779199366234e-06!GO:0015631;tubulin binding;1.71929626034695e-06!GO:0005524;ATP binding;1.81127488496331e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.07930195344689e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.30107907040493e-06!GO:0006754;ATP biosynthetic process;2.34090571334104e-06!GO:0006753;nucleoside phosphate metabolic process;2.34090571334104e-06!GO:0006164;purine nucleotide biosynthetic process;2.36866065379264e-06!GO:0012501;programmed cell death;2.45902993801592e-06!GO:0005770;late endosome;2.69526390727706e-06!GO:0009141;nucleoside triphosphate metabolic process;2.83587852814416e-06!GO:0008219;cell death;2.95875311450201e-06!GO:0016265;death;2.95875311450201e-06!GO:0016881;acid-amino acid ligase activity;3.11162394816008e-06!GO:0009055;electron carrier activity;3.26087451718561e-06!GO:0006915;apoptosis;3.40940748119788e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.4467837519246e-06!GO:0009060;aerobic respiration;3.45507463913002e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.657168841384e-06!GO:0030554;adenyl nucleotide binding;3.68477034523367e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.74770146763011e-06!GO:0051234;establishment of localization;3.91797410743049e-06!GO:0005905;coated pit;4.09535225608219e-06!GO:0009259;ribonucleotide metabolic process;4.21314197440271e-06!GO:0016887;ATPase activity;4.29222493516309e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.52006030818958e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.08254897817064e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.08254897817064e-06!GO:0016310;phosphorylation;5.35612111513455e-06!GO:0000139;Golgi membrane;5.86769057958466e-06!GO:0008287;protein serine/threonine phosphatase complex;5.98538980341551e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.33396075425505e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.43586164894559e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.43586164894559e-06!GO:0005769;early endosome;6.56837808998344e-06!GO:0045333;cellular respiration;6.65226694180604e-06!GO:0006732;coenzyme metabolic process;6.65226694180604e-06!GO:0009056;catabolic process;6.772446030558e-06!GO:0045786;negative regulation of progression through cell cycle;6.80001883028392e-06!GO:0003712;transcription cofactor activity;6.94555961070933e-06!GO:0005874;microtubule;7.45314721585271e-06!GO:0008047;enzyme activator activity;8.0651628107046e-06!GO:0017038;protein import;8.34736255423427e-06!GO:0051246;regulation of protein metabolic process;8.76143429918255e-06!GO:0005096;GTPase activator activity;9.21810611180517e-06!GO:0005773;vacuole;1.37662463148824e-05!GO:0042623;ATPase activity, coupled;1.45290734973512e-05!GO:0016564;transcription repressor activity;1.55932102623243e-05!GO:0045259;proton-transporting ATP synthase complex;1.6642395730445e-05!GO:0005793;ER-Golgi intermediate compartment;1.68958317183113e-05!GO:0009260;ribonucleotide biosynthetic process;1.72606716336791e-05!GO:0006099;tricarboxylic acid cycle;2.02138202994631e-05!GO:0046356;acetyl-CoA catabolic process;2.02138202994631e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.15999327437971e-05!GO:0007242;intracellular signaling cascade;2.20728881497527e-05!GO:0007265;Ras protein signal transduction;2.49908681323654e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.02557998275106e-05!GO:0005789;endoplasmic reticulum membrane;5.19037960002829e-05!GO:0030120;vesicle coat;5.29870004231615e-05!GO:0030662;coated vesicle membrane;5.29870004231615e-05!GO:0016070;RNA metabolic process;5.36536757911047e-05!GO:0003779;actin binding;5.65631677892844e-05!GO:0009109;coenzyme catabolic process;5.75936360383113e-05!GO:0044453;nuclear membrane part;5.99034541973286e-05!GO:0030027;lamellipodium;6.52903158745978e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;6.64392070491111e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.04069921686112e-05!GO:0015399;primary active transmembrane transporter activity;7.04069921686112e-05!GO:0006084;acetyl-CoA metabolic process;7.06322816139388e-05!GO:0016568;chromatin modification;8.28700071075333e-05!GO:0051187;cofactor catabolic process;9.01691498795234e-05!GO:0051128;regulation of cellular component organization and biogenesis;9.0290729722672e-05!GO:0019717;synaptosome;0.000111515806484944!GO:0008017;microtubule binding;0.000119186570461528!GO:0000245;spliceosome assembly;0.000119339867958156!GO:0000323;lytic vacuole;0.000147552899276988!GO:0005764;lysosome;0.000147552899276988!GO:0031072;heat shock protein binding;0.000149327973724181!GO:0005798;Golgi-associated vesicle;0.000151700364279815!GO:0030136;clathrin-coated vesicle;0.000153732014076873!GO:0006613;cotranslational protein targeting to membrane;0.000189910788502791!GO:0006323;DNA packaging;0.000194163689108953!GO:0043069;negative regulation of programmed cell death;0.000220772163495087!GO:0000159;protein phosphatase type 2A complex;0.000232657012202733!GO:0043492;ATPase activity, coupled to movement of substances;0.000233514013208559!GO:0022890;inorganic cation transmembrane transporter activity;0.000247813257483061!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000255407692427132!GO:0030133;transport vesicle;0.000264822976654105!GO:0006888;ER to Golgi vesicle-mediated transport;0.000267011082775838!GO:0030118;clathrin coat;0.00027457681582716!GO:0003729;mRNA binding;0.000277183248626033!GO:0000902;cell morphogenesis;0.000282442633324328!GO:0032989;cellular structure morphogenesis;0.000282442633324328!GO:0006366;transcription from RNA polymerase II promoter;0.000284875193673789!GO:0031901;early endosome membrane;0.000292792390345185!GO:0016197;endosome transport;0.00029504331884318!GO:0005643;nuclear pore;0.000299149770808886!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00030292110405977!GO:0006259;DNA metabolic process;0.000312978148736916!GO:0032446;protein modification by small protein conjugation;0.000312978148736916!GO:0006403;RNA localization;0.000343740931483001!GO:0051188;cofactor biosynthetic process;0.000344262837600414!GO:0043066;negative regulation of apoptosis;0.000346830331768407!GO:0030867;rough endoplasmic reticulum membrane;0.000353240136188233!GO:0003714;transcription corepressor activity;0.00036697020074537!GO:0050657;nucleic acid transport;0.000373652791796261!GO:0051236;establishment of RNA localization;0.000373652791796261!GO:0050658;RNA transport;0.000373652791796261!GO:0005839;proteasome core complex (sensu Eukaryota);0.000398055061170186!GO:0005741;mitochondrial outer membrane;0.000398055061170186!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000400203635670615!GO:0006606;protein import into nucleus;0.000443430574830629!GO:0043005;neuron projection;0.000444200452249718!GO:0000151;ubiquitin ligase complex;0.000464168712421539!GO:0051170;nuclear import;0.000483880076494666!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000505316881619616!GO:0004812;aminoacyl-tRNA ligase activity;0.000505316881619616!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000505316881619616!GO:0007399;nervous system development;0.00051080922457178!GO:0008654;phospholipid biosynthetic process;0.00051080922457178!GO:0030532;small nuclear ribonucleoprotein complex;0.000518259062481889!GO:0048468;cell development;0.000518259062481889!GO:0016567;protein ubiquitination;0.00053391381990421!GO:0008601;protein phosphatase type 2A regulator activity;0.000537330982503692!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000562296096682539!GO:0050794;regulation of cellular process;0.000588438712817582!GO:0006752;group transfer coenzyme metabolic process;0.000604796699942997!GO:0050789;regulation of biological process;0.000611141509234026!GO:0019867;outer membrane;0.000617538133347877!GO:0031968;organelle outer membrane;0.000617863910448979!GO:0004721;phosphoprotein phosphatase activity;0.000622380248194651!GO:0005791;rough endoplasmic reticulum;0.000632359680732674!GO:0016791;phosphoric monoester hydrolase activity;0.000659587291547477!GO:0051726;regulation of cell cycle;0.000696201432144237!GO:0001726;ruffle;0.00074284253075141!GO:0006916;anti-apoptosis;0.000765969299579537!GO:0005875;microtubule associated complex;0.000774363999024944!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000831805641196426!GO:0016311;dephosphorylation;0.000878419741056376!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000920734043755674!GO:0043038;amino acid activation;0.000972754828806419!GO:0006418;tRNA aminoacylation for protein translation;0.000972754828806419!GO:0043039;tRNA aminoacylation;0.000972754828806419!GO:0000074;regulation of progression through cell cycle;0.000984074574774936!GO:0051087;chaperone binding;0.00100575703689702!GO:0042802;identical protein binding;0.00109001011619487!GO:0007049;cell cycle;0.00114986939921766!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00118291727493348!GO:0009892;negative regulation of metabolic process;0.00120238299764644!GO:0043566;structure-specific DNA binding;0.00123091700982309!GO:0051056;regulation of small GTPase mediated signal transduction;0.00140549891990127!GO:0006607;NLS-bearing substrate import into nucleus;0.0014774050662464!GO:0043623;cellular protein complex assembly;0.00152557308987546!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00153356484947901!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00153356484947901!GO:0007019;microtubule depolymerization;0.0015776608832048!GO:0009966;regulation of signal transduction;0.00162780573203968!GO:0016126;sterol biosynthetic process;0.00162780573203968!GO:0008361;regulation of cell size;0.00162780573203968!GO:0006650;glycerophospholipid metabolic process;0.00163946325895011!GO:0003724;RNA helicase activity;0.00164877587851444!GO:0046467;membrane lipid biosynthetic process;0.00173972406433269!GO:0009108;coenzyme biosynthetic process;0.00183486442630205!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00186201815608181!GO:0005085;guanyl-nucleotide exchange factor activity;0.00190364553324583!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00196662458129838!GO:0031902;late endosome membrane;0.00198806499225547!GO:0019902;phosphatase binding;0.00202210737037945!GO:0004298;threonine endopeptidase activity;0.00210721897527743!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00216076669128647!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00216076669128647!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00216076669128647!GO:0022406;membrane docking;0.00225497948370441!GO:0048278;vesicle docking;0.00225497948370441!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00228098182256566!GO:0006470;protein amino acid dephosphorylation;0.00230556121345321!GO:0005938;cell cortex;0.00239383142370106!GO:0016050;vesicle organization and biogenesis;0.00242329793015048!GO:0004722;protein serine/threonine phosphatase activity;0.00242445218857209!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00247715235840023!GO:0008154;actin polymerization and/or depolymerization;0.00247715235840023!GO:0003676;nucleic acid binding;0.00247715235840023!GO:0051789;response to protein stimulus;0.00255621196220578!GO:0006986;response to unfolded protein;0.00255621196220578!GO:0008026;ATP-dependent helicase activity;0.00267273253715501!GO:0015980;energy derivation by oxidation of organic compounds;0.00273747206647032!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00287388098103145!GO:0007272;ensheathment of neurons;0.0029292231932325!GO:0008366;axon ensheathment;0.0029292231932325!GO:0006904;vesicle docking during exocytosis;0.00307557862250058!GO:0016049;cell growth;0.00327450987457736!GO:0019904;protein domain specific binding;0.0032872872987855!GO:0016481;negative regulation of transcription;0.00337523155719573!GO:0051028;mRNA transport;0.00345937813912744!GO:0006612;protein targeting to membrane;0.00350540888843881!GO:0001508;regulation of action potential;0.00356046780559331!GO:0009117;nucleotide metabolic process;0.00357991213142068!GO:0006414;translational elongation;0.00362652418956596!GO:0012506;vesicle membrane;0.00362652418956596!GO:0019208;phosphatase regulator activity;0.00365491377901718!GO:0003697;single-stranded DNA binding;0.00365801319346319!GO:0006402;mRNA catabolic process;0.00375612532597055!GO:0043209;myelin sheath;0.00381595540389468!GO:0007243;protein kinase cascade;0.00391227769048907!GO:0065002;intracellular protein transport across a membrane;0.00426343692135739!GO:0008139;nuclear localization sequence binding;0.0045551188279626!GO:0005100;Rho GTPase activator activity;0.0046201813104073!GO:0005774;vacuolar membrane;0.00463784972455176!GO:0051920;peroxiredoxin activity;0.00464131395886081!GO:0007266;Rho protein signal transduction;0.00464739887765429!GO:0031324;negative regulation of cellular metabolic process;0.0046889273127513!GO:0048487;beta-tubulin binding;0.00469125398639781!GO:0005099;Ras GTPase activator activity;0.00470619713817883!GO:0050811;GABA receptor binding;0.00473359796338065!GO:0031114;regulation of microtubule depolymerization;0.00479855661704908!GO:0007026;negative regulation of microtubule depolymerization;0.00479855661704908!GO:0007017;microtubule-based process;0.00483149932816006!GO:0004386;helicase activity;0.00483969881743714!GO:0008610;lipid biosynthetic process;0.00508469961975003!GO:0043021;ribonucleoprotein binding;0.00549667441293713!GO:0008286;insulin receptor signaling pathway;0.00555444737308761!GO:0051261;protein depolymerization;0.00601235842846709!GO:0042254;ribosome biogenesis and assembly;0.006238772277038!GO:0006643;membrane lipid metabolic process;0.00641267931946427!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00660791873584562!GO:0005885;Arp2/3 protein complex;0.00667492882619443!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00691991718565442!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00786614711988837!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00791552225820592!GO:0005813;centrosome;0.00800367843161252!GO:0046578;regulation of Ras protein signal transduction;0.00802422195129893!GO:0044433;cytoplasmic vesicle part;0.00854219049362781!GO:0030041;actin filament polymerization;0.00871286447284667!GO:0003713;transcription coactivator activity;0.00871286447284667!GO:0045892;negative regulation of transcription, DNA-dependent;0.00871286447284667!GO:0051276;chromosome organization and biogenesis;0.00914402167183016!GO:0005869;dynactin complex;0.0092738775798584!GO:0043284;biopolymer biosynthetic process;0.00947987925270064!GO:0033673;negative regulation of kinase activity;0.00958519116280163!GO:0006469;negative regulation of protein kinase activity;0.00958519116280163!GO:0043067;regulation of programmed cell death;0.00974852500279052!GO:0001505;regulation of neurotransmitter levels;0.00982850443036778!GO:0016363;nuclear matrix;0.00982850443036778!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0101794045815805!GO:0004667;prostaglandin-D synthase activity;0.0101794045815805!GO:0050802;circadian sleep/wake cycle, sleep;0.0101794045815805!GO:0022410;circadian sleep/wake cycle process;0.0101794045815805!GO:0042749;regulation of circadian sleep/wake cycle;0.0101794045815805!GO:0007050;cell cycle arrest;0.0101820597668364!GO:0048500;signal recognition particle;0.0101903697098623!GO:0005765;lysosomal membrane;0.0106793313063662!GO:0043681;protein import into mitochondrion;0.0107762124300361!GO:0006891;intra-Golgi vesicle-mediated transport;0.0109669065321556!GO:0043087;regulation of GTPase activity;0.0111181043284524!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0112164712294045!GO:0019888;protein phosphatase regulator activity;0.0116748332085151!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0119192884011323!GO:0050767;regulation of neurogenesis;0.0119518232505169!GO:0030132;clathrin coat of coated pit;0.0120102097375436!GO:0042981;regulation of apoptosis;0.0120102543833909!GO:0001666;response to hypoxia;0.0120884818718909!GO:0046930;pore complex;0.0123142786174812!GO:0051168;nuclear export;0.0123142786174812!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0125482281062999!GO:0065009;regulation of a molecular function;0.0127794673243901!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0128333530350012!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0128333530350012!GO:0030742;GTP-dependent protein binding;0.0130239360381273!GO:0000059;protein import into nucleus, docking;0.0134827135592921!GO:0008186;RNA-dependent ATPase activity;0.0134827135592921!GO:0051348;negative regulation of transferase activity;0.0137187969821173!GO:0030426;growth cone;0.0138485744457887!GO:0007005;mitochondrion organization and biogenesis;0.0138791101768308!GO:0030119;AP-type membrane coat adaptor complex;0.0139060764961284!GO:0006695;cholesterol biosynthetic process;0.0144083580408479!GO:0035035;histone acetyltransferase binding;0.0147314040688391!GO:0006401;RNA catabolic process;0.0149908824290236!GO:0030384;phosphoinositide metabolic process;0.0152956040483368!GO:0044448;cell cortex part;0.0153277491903696!GO:0006892;post-Golgi vesicle-mediated transport;0.0154026979462533!GO:0030425;dendrite;0.0156732126435772!GO:0005815;microtubule organizing center;0.015708592025037!GO:0048154;S100 beta binding;0.0164438094086433!GO:0044437;vacuolar part;0.0165715423769669!GO:0016859;cis-trans isomerase activity;0.0171254321244325!GO:0042026;protein refolding;0.0171645076829963!GO:0005092;GDP-dissociation inhibitor activity;0.017349711856728!GO:0051427;hormone receptor binding;0.0174784471751795!GO:0030658;transport vesicle membrane;0.0175599969599504!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0181282109647021!GO:0016301;kinase activity;0.0181282109647021!GO:0030659;cytoplasmic vesicle membrane;0.0185720798168489!GO:0000314;organellar small ribosomal subunit;0.0186231652089439!GO:0005763;mitochondrial small ribosomal subunit;0.0186231652089439!GO:0030660;Golgi-associated vesicle membrane;0.0186624450933765!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0188089525799987!GO:0030427;site of polarized growth;0.0191080708872722!GO:0030137;COPI-coated vesicle;0.0191738901202451!GO:0030131;clathrin adaptor complex;0.0191738901202451!GO:0043488;regulation of mRNA stability;0.0191738901202451!GO:0043487;regulation of RNA stability;0.0191738901202451!GO:0005762;mitochondrial large ribosomal subunit;0.0191927447495562!GO:0000315;organellar large ribosomal subunit;0.0191927447495562!GO:0006333;chromatin assembly or disassembly;0.0192500770982872!GO:0005048;signal sequence binding;0.0194141993352094!GO:0051540;metal cluster binding;0.0201603784538034!GO:0051536;iron-sulfur cluster binding;0.0201603784538034!GO:0007006;mitochondrial membrane organization and biogenesis;0.0204664654895052!GO:0043086;negative regulation of catalytic activity;0.0205175943183939!GO:0007034;vacuolar transport;0.0208351956237429!GO:0046474;glycerophospholipid biosynthetic process;0.0216648782439954!GO:0004674;protein serine/threonine kinase activity;0.021795971200148!GO:0005667;transcription factor complex;0.0218029085069271!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0229626503530251!GO:0042578;phosphoric ester hydrolase activity;0.0231456283412499!GO:0000118;histone deacetylase complex;0.023275800826042!GO:0031124;mRNA 3'-end processing;0.0234372184810651!GO:0016740;transferase activity;0.0234372184810651!GO:0008022;protein C-terminus binding;0.0235996473374965!GO:0003746;translation elongation factor activity;0.0240591763754891!GO:0005868;cytoplasmic dynein complex;0.0242511129911755!GO:0000062;acyl-CoA binding;0.0242942382887001!GO:0008180;signalosome;0.0242942382887001!GO:0009165;nucleotide biosynthetic process;0.0243904455798721!GO:0001558;regulation of cell growth;0.0246490778070801!GO:0003690;double-stranded DNA binding;0.024894313584604!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0255595445865969!GO:0055083;monovalent inorganic anion homeostasis;0.0255595445865969!GO:0055064;chloride ion homeostasis;0.0255595445865969!GO:0030644;cellular chloride ion homeostasis;0.0255595445865969!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0255595445865969!GO:0019894;kinesin binding;0.0260164048175906!GO:0065007;biological regulation;0.0260346181541944!GO:0048489;synaptic vesicle transport;0.0266278060983626!GO:0015682;ferric iron transport;0.0267204500669961!GO:0015091;ferric iron transmembrane transporter activity;0.0267204500669961!GO:0031643;positive regulation of myelination;0.0267204500669961!GO:0005788;endoplasmic reticulum lumen;0.026823675516271!GO:0042552;myelination;0.026851934915007!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0272790504030276!GO:0045047;protein targeting to ER;0.0272790504030276!GO:0051287;NAD binding;0.0273720220940147!GO:0019887;protein kinase regulator activity;0.0276934229136931!GO:0001887;selenium metabolic process;0.0278293667004634!GO:0030258;lipid modification;0.0278293667004634!GO:0035257;nuclear hormone receptor binding;0.0283200289424192!GO:0051539;4 iron, 4 sulfur cluster binding;0.028425678103815!GO:0019903;protein phosphatase binding;0.0304975806589907!GO:0022402;cell cycle process;0.0310316263959031!GO:0004004;ATP-dependent RNA helicase activity;0.0313182014937023!GO:0017166;vinculin binding;0.0323012300881018!GO:0006665;sphingolipid metabolic process;0.0323253883837665!GO:0050749;apolipoprotein E receptor binding;0.0324482565470249!GO:0033116;ER-Golgi intermediate compartment membrane;0.0329353085653903!GO:0050435;beta-amyloid metabolic process;0.0329814390353744!GO:0019911;structural constituent of myelin sheath;0.0331016491908133!GO:0046870;cadmium ion binding;0.0335044224466682!GO:0031628;opioid receptor binding;0.0335044224466682!GO:0031852;mu-type opioid receptor binding;0.0335044224466682!GO:0000287;magnesium ion binding;0.034265894622745!GO:0006818;hydrogen transport;0.0347146796767528!GO:0030125;clathrin vesicle coat;0.0347146796767528!GO:0030665;clathrin coated vesicle membrane;0.0347146796767528!GO:0006399;tRNA metabolic process;0.0351361260627364!GO:0006644;phospholipid metabolic process;0.0355860650152038!GO:0051252;regulation of RNA metabolic process;0.0357683409469934!GO:0045055;regulated secretory pathway;0.0358177157751683!GO:0008088;axon cargo transport;0.0361683860379293!GO:0016579;protein deubiquitination;0.0373896368177057!GO:0006376;mRNA splice site selection;0.0374779687591296!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0374779687591296!GO:0008312;7S RNA binding;0.037676145804889!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0378265837717186!GO:0033043;regulation of organelle organization and biogenesis;0.0378265837717186!GO:0030139;endocytic vesicle;0.0382776007097626!GO:0031109;microtubule polymerization or depolymerization;0.0386714183434993!GO:0006091;generation of precursor metabolites and energy;0.0388194528374579!GO:0030911;TPR domain binding;0.0388323934925191!GO:0030663;COPI coated vesicle membrane;0.0388323934925191!GO:0030126;COPI vesicle coat;0.0388323934925191!GO:0008250;oligosaccharyl transferase complex;0.0390098141545039!GO:0015629;actin cytoskeleton;0.0396962291005152!GO:0006672;ceramide metabolic process;0.0396962291005152!GO:0019783;small conjugating protein-specific protease activity;0.0396962291005152!GO:0031371;ubiquitin conjugating enzyme complex;0.0401483577741152!GO:0030569;chymotrypsin inhibitor activity;0.0412171334477457!GO:0003711;transcription elongation regulator activity;0.0413379584679392!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0427845891596973!GO:0030641;cellular hydrogen ion homeostasis;0.044283730858329!GO:0016491;oxidoreductase activity;0.0446334068543951!GO:0046519;sphingoid metabolic process;0.0449204765315711!GO:0050839;cell adhesion molecule binding;0.0451507673784585!GO:0000209;protein polyubiquitination;0.04521241961895!GO:0046488;phosphatidylinositol metabolic process;0.0455157879976562!GO:0015992;proton transport;0.0459152754519251!GO:0032011;ARF protein signal transduction;0.0461275897507044!GO:0032012;regulation of ARF protein signal transduction;0.0461275897507044!GO:0004843;ubiquitin-specific protease activity;0.0464131494390191!GO:0016408;C-acyltransferase activity;0.0467768578917215!GO:0006595;polyamine metabolic process;0.0471944733930915!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0481988889666568!GO:0019198;transmembrane receptor protein phosphatase activity;0.0481988889666568!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0482355586054709!GO:0046839;phospholipid dephosphorylation;0.0482355586054709!GO:0030145;manganese ion binding;0.0489979780174542!GO:0006364;rRNA processing;0.0492186531628711!GO:0006383;transcription from RNA polymerase III promoter;0.0492317521008653 | |||
|sample_id=10165 | |sample_id=10165 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=locus coeruleus | |sample_tissue=locus coeruleus | ||
|top_motifs=SOX2:3.12767895055;REST:2.95798046325;SOX{8,9,10}:2.88234212163;GATA4:2.83186982387;NHLH1,2:2.69502809555;SOX5:2.69115350328;NFIX:2.61739498303;ZFP161:2.56674655754;MYFfamily:2.53012771656;NKX3-2:2.46808518642;RFX2..5_RFXANK_RFXAP:2.45115388476;PRDM1:2.44472267965;RFX1:2.3626473921;RREB1:2.32591711267;MED-1{core}:2.3245481605;ZBTB6:2.27958816641;CUX2:2.23077772418;TGIF1:2.17879446484;PRRX1,2:2.14093358347;ATF2:2.10494138687;HBP1_HMGB_SSRP1_UBTF:2.103538408;FOXP1:2.09234933063;POU6F1:2.04570339704;GTF2I:2.02139184792;PATZ1:2.02037450773;HIC1:1.88909982782;EP300:1.88669474282;MTE{core}:1.87877518461;LMO2:1.87384964282;MTF1:1.82037810762;TFAP2B:1.80836739229;DBP:1.75637817614;OCT4_SOX2{dimer}:1.75297648312;GFI1B:1.73663352202;EGR1..3:1.72951688041;FOXP3:1.71216086546;MAZ:1.66308824702;FOXM1:1.65933586065;PAX6:1.64988288058;MZF1:1.64415006028;KLF4:1.63314165698;NR3C1:1.61225367981;JUN:1.60891099956;RBPJ:1.60325517564;FOXQ1:1.51683834108;FOXD3:1.50703334315;NANOG:1.5016970011;SMAD1..7,9:1.48031186642;SP1:1.47958160127;BPTF:1.47309487429;FOX{D1,D2}:1.47006937442;SOX17:1.45983252766;POU3F1..4:1.45300478739;HOXA9_MEIS1:1.44346248245;GCM1,2:1.44019528597;ARID5B:1.43981198503;XBP1:1.36092744261;AR:1.35304314677;FOXO1,3,4:1.35277071302;NRF1:1.34713308916;PAX5:1.32409874818;AHR_ARNT_ARNT2:1.32400297135;ONECUT1,2:1.26451804051;BREu{core}:1.23906037181;T:1.22057656954;PDX1:1.21782831018;STAT2,4,6:1.20156668336;CDC5L:1.19095659596;ZNF423:1.15055238774;HOX{A6,A7,B6,B7}:1.13644748534;MAFB:1.11786015682;POU5F1:1.09246443616;IKZF2:1.08573426054;HOX{A4,D4}:1.07610954617;LEF1_TCF7_TCF7L1,2:1.06754581961;MYBL2:1.05673039977;ZNF384:1.03840803182;ZBTB16:1.02698727758;SREBF1,2:1.01188824179;STAT1,3:0.992652472899;ZNF143:0.986224274528;EBF1:0.908587737852;FOX{F1,F2,J1}:0.88035050627;TOPORS:0.816262202113;CREB1:0.767301756922;PAX4:0.754486549915;TLX1..3_NFIC{dimer}:0.717948916125;TLX2:0.7178889364;TFDP1:0.683353475912;FOX{I1,J2}:0.630057077152;ZIC1..3:0.619317949189;NKX2-3_NKX2-5:0.61731152576;NKX6-1,2:0.615910597127;HMGA1,2:0.538663162677;TFAP2{A,C}:0.515858773368;VSX1,2:0.501351361998;HAND1,2:0.49477677797;GFI1:0.46114326054;NFIL3:0.432470940749;HSF1,2:0.420959335578;IRF7:0.401719620249;NKX3-1:0.386621067626;SPZ1:0.338842637561;MYOD1:0.336028938955;GTF2A1,2:0.320005801133;GZF1:0.304095141941;NFY{A,B,C}:0.298215158234;NFATC1..3:0.291387247083;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.25301816558;TEF:0.245639546332;ATF5_CREB3:0.182738894438;CRX:0.182394796553;ZNF238:0.173785752714;PAX2:0.159571335921;IRF1,2:0.114451515688;EVI1:0.105937070372;FOXN1:0.0956920096103;HMX1:0.0525828052426;NFE2L2:0.0490024696684;XCPE1{core}:0.0487309615195;ADNP_IRX_SIX_ZHX:0.0400867355913;PITX1..3:0.0365666979419;PBX1:0.0353304358812;ZEB1:0.0287535328193;ESRRA:0.0199407644623;UFEwm:0.00179614924854;AIRE:-0.00488434776942;LHX3,4:-0.00864460378903;ALX1:-0.0173811723424;POU1F1:-0.0195368437216;YY1:-0.0612179607577;FOXA2:-0.119475592491;RORA:-0.147886903053;MEF2{A,B,C,D}:-0.1637731293;NR5A1,2:-0.190425356455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.284964910641;FOXL1:-0.294851943008;CDX1,2,4:-0.314485375433;ATF4:-0.357194375595;TFCP2:-0.365094196411;SPI1:-0.385377000506;IKZF1:-0.416740438789;PAX3,7:-0.422874981487;SPIB:-0.463373962618;NR1H4:-0.482045685947;ATF6:-0.495506821559;ETS1,2:-0.508311328281;DMAP1_NCOR{1,2}_SMARC:-0.528783752157;HNF4A_NR2F1,2:-0.567943547464;NFE2:-0.574450618301;CEBPA,B_DDIT3:-0.589652360125;PAX1,9:-0.598078302611;GATA6:-0.613649828009;NANOG{mouse}:-0.618964407007;ALX4:-0.638026037234;TP53:-0.692751356774;SNAI1..3:-0.693065994993;NFE2L1:-0.715349838649;NKX2-2,8:-0.718700636208;HIF1A:-0.735086365999;PAX8:-0.75918068543;bHLH_family:-0.795003035041;TFAP4:-0.813781613612;TBP:-0.856738469239;ELF1,2,4:-0.874966045879;HNF1A:-0.898912485728;ELK1,4_GABP{A,B1}:-0.917396124148;TEAD1:-0.960530295454;RXR{A,B,G}:-0.985469715838;NKX2-1,4:-1.01209288277;BACH2:-1.01716049805;ESR1:-1.06037314467;FOSL2:-1.06957371327;E2F1..5:-1.15222539412;FOS_FOS{B,L1}_JUN{B,D}:-1.15248960539;TBX4,5:-1.16712381058;NFKB1_REL_RELA:-1.17105968577;NR6A1:-1.25505202295;POU2F1..3:-1.27274773671;RUNX1..3:-1.30294730495;HLF:-1.34244230311;SRF:-1.41122532801;MYB:-1.46263554261;RXRA_VDR{dimer}:-1.52917671604;ZNF148:-1.53538917478;TAL1_TCF{3,4,12}:-1.55465124672;PPARG:-1.6976224106;GLI1..3:-1.7659948113;HES1:-2.08988893167;STAT5{A,B}:-2.1134799316;HOX{A5,B5}:-2.37891462727;EN1,2:-2.40198187022 | |top_motifs=SOX2:3.12767895055;REST:2.95798046325;SOX{8,9,10}:2.88234212163;GATA4:2.83186982387;NHLH1,2:2.69502809555;SOX5:2.69115350328;NFIX:2.61739498303;ZFP161:2.56674655754;MYFfamily:2.53012771656;NKX3-2:2.46808518642;RFX2..5_RFXANK_RFXAP:2.45115388476;PRDM1:2.44472267965;RFX1:2.3626473921;RREB1:2.32591711267;MED-1{core}:2.3245481605;ZBTB6:2.27958816641;CUX2:2.23077772418;TGIF1:2.17879446484;PRRX1,2:2.14093358347;ATF2:2.10494138687;HBP1_HMGB_SSRP1_UBTF:2.103538408;FOXP1:2.09234933063;POU6F1:2.04570339704;GTF2I:2.02139184792;PATZ1:2.02037450773;HIC1:1.88909982782;EP300:1.88669474282;MTE{core}:1.87877518461;LMO2:1.87384964282;MTF1:1.82037810762;TFAP2B:1.80836739229;DBP:1.75637817614;OCT4_SOX2{dimer}:1.75297648312;GFI1B:1.73663352202;EGR1..3:1.72951688041;FOXP3:1.71216086546;MAZ:1.66308824702;FOXM1:1.65933586065;PAX6:1.64988288058;MZF1:1.64415006028;KLF4:1.63314165698;NR3C1:1.61225367981;JUN:1.60891099956;RBPJ:1.60325517564;FOXQ1:1.51683834108;FOXD3:1.50703334315;NANOG:1.5016970011;SMAD1..7,9:1.48031186642;SP1:1.47958160127;BPTF:1.47309487429;FOX{D1,D2}:1.47006937442;SOX17:1.45983252766;POU3F1..4:1.45300478739;HOXA9_MEIS1:1.44346248245;GCM1,2:1.44019528597;ARID5B:1.43981198503;XBP1:1.36092744261;AR:1.35304314677;FOXO1,3,4:1.35277071302;NRF1:1.34713308916;PAX5:1.32409874818;AHR_ARNT_ARNT2:1.32400297135;ONECUT1,2:1.26451804051;BREu{core}:1.23906037181;T:1.22057656954;PDX1:1.21782831018;STAT2,4,6:1.20156668336;CDC5L:1.19095659596;ZNF423:1.15055238774;HOX{A6,A7,B6,B7}:1.13644748534;MAFB:1.11786015682;POU5F1:1.09246443616;IKZF2:1.08573426054;HOX{A4,D4}:1.07610954617;LEF1_TCF7_TCF7L1,2:1.06754581961;MYBL2:1.05673039977;ZNF384:1.03840803182;ZBTB16:1.02698727758;SREBF1,2:1.01188824179;STAT1,3:0.992652472899;ZNF143:0.986224274528;EBF1:0.908587737852;FOX{F1,F2,J1}:0.88035050627;TOPORS:0.816262202113;CREB1:0.767301756922;PAX4:0.754486549915;TLX1..3_NFIC{dimer}:0.717948916125;TLX2:0.7178889364;TFDP1:0.683353475912;FOX{I1,J2}:0.630057077152;ZIC1..3:0.619317949189;NKX2-3_NKX2-5:0.61731152576;NKX6-1,2:0.615910597127;HMGA1,2:0.538663162677;TFAP2{A,C}:0.515858773368;VSX1,2:0.501351361998;HAND1,2:0.49477677797;GFI1:0.46114326054;NFIL3:0.432470940749;HSF1,2:0.420959335578;IRF7:0.401719620249;NKX3-1:0.386621067626;SPZ1:0.338842637561;MYOD1:0.336028938955;GTF2A1,2:0.320005801133;GZF1:0.304095141941;NFY{A,B,C}:0.298215158234;NFATC1..3:0.291387247083;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.25301816558;TEF:0.245639546332;ATF5_CREB3:0.182738894438;CRX:0.182394796553;ZNF238:0.173785752714;PAX2:0.159571335921;IRF1,2:0.114451515688;EVI1:0.105937070372;FOXN1:0.0956920096103;HMX1:0.0525828052426;NFE2L2:0.0490024696684;XCPE1{core}:0.0487309615195;ADNP_IRX_SIX_ZHX:0.0400867355913;PITX1..3:0.0365666979419;PBX1:0.0353304358812;ZEB1:0.0287535328193;ESRRA:0.0199407644623;UFEwm:0.00179614924854;AIRE:-0.00488434776942;LHX3,4:-0.00864460378903;ALX1:-0.0173811723424;POU1F1:-0.0195368437216;YY1:-0.0612179607577;FOXA2:-0.119475592491;RORA:-0.147886903053;MEF2{A,B,C,D}:-0.1637731293;NR5A1,2:-0.190425356455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.284964910641;FOXL1:-0.294851943008;CDX1,2,4:-0.314485375433;ATF4:-0.357194375595;TFCP2:-0.365094196411;SPI1:-0.385377000506;IKZF1:-0.416740438789;PAX3,7:-0.422874981487;SPIB:-0.463373962618;NR1H4:-0.482045685947;ATF6:-0.495506821559;ETS1,2:-0.508311328281;DMAP1_NCOR{1,2}_SMARC:-0.528783752157;HNF4A_NR2F1,2:-0.567943547464;NFE2:-0.574450618301;CEBPA,B_DDIT3:-0.589652360125;PAX1,9:-0.598078302611;GATA6:-0.613649828009;NANOG{mouse}:-0.618964407007;ALX4:-0.638026037234;TP53:-0.692751356774;SNAI1..3:-0.693065994993;NFE2L1:-0.715349838649;NKX2-2,8:-0.718700636208;HIF1A:-0.735086365999;PAX8:-0.75918068543;bHLH_family:-0.795003035041;TFAP4:-0.813781613612;TBP:-0.856738469239;ELF1,2,4:-0.874966045879;HNF1A:-0.898912485728;ELK1,4_GABP{A,B1}:-0.917396124148;TEAD1:-0.960530295454;RXR{A,B,G}:-0.985469715838;NKX2-1,4:-1.01209288277;BACH2:-1.01716049805;ESR1:-1.06037314467;FOSL2:-1.06957371327;E2F1..5:-1.15222539412;FOS_FOS{B,L1}_JUN{B,D}:-1.15248960539;TBX4,5:-1.16712381058;NFKB1_REL_RELA:-1.17105968577;NR6A1:-1.25505202295;POU2F1..3:-1.27274773671;RUNX1..3:-1.30294730495;HLF:-1.34244230311;SRF:-1.41122532801;MYB:-1.46263554261;RXRA_VDR{dimer}:-1.52917671604;ZNF148:-1.53538917478;TAL1_TCF{3,4,12}:-1.55465124672;PPARG:-1.6976224106;GLI1..3:-1.7659948113;HES1:-2.08988893167;STAT5{A,B}:-2.1134799316;HOX{A5,B5}:-2.37891462727;EN1,2:-2.40198187022 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10165-103B3;search_select_hide=table117:FF:10165-103B3 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | locus coeruleus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12322 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12322
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12322
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0688 |
| 10 | 10 | 0.0453 |
| 100 | 100 | 0.404 |
| 101 | 101 | 0.621 |
| 102 | 102 | 0.831 |
| 103 | 103 | 0.0309 |
| 104 | 104 | 0.0894 |
| 105 | 105 | 0.103 |
| 106 | 106 | 0.0188 |
| 107 | 107 | 0.0774 |
| 108 | 108 | 0.999 |
| 109 | 109 | 0.00239 |
| 11 | 11 | 0.012 |
| 110 | 110 | 0.0507 |
| 111 | 111 | 0.16 |
| 112 | 112 | 0.489 |
| 113 | 113 | 0.537 |
| 114 | 114 | 0.128 |
| 115 | 115 | 0.985 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.0144 |
| 118 | 118 | 0.217 |
| 119 | 119 | 0.275 |
| 12 | 12 | 0.537 |
| 120 | 120 | 0.191 |
| 121 | 121 | 0.481 |
| 122 | 122 | 0.977 |
| 123 | 123 | 0.429 |
| 124 | 124 | 0.205 |
| 125 | 125 | 0.481 |
| 126 | 126 | 0.034 |
| 127 | 127 | 0.461 |
| 128 | 128 | 0.129 |
| 129 | 129 | 0.408 |
| 13 | 13 | 0.0024 |
| 130 | 130 | 0.123 |
| 131 | 131 | 0.0198 |
| 132 | 132 | 0.499 |
| 133 | 133 | 0.0363 |
| 134 | 134 | 0.448 |
| 135 | 135 | 0.145 |
| 136 | 136 | 0.00363 |
| 137 | 137 | 0.582 |
| 138 | 138 | 0.933 |
| 139 | 139 | 0.226 |
| 14 | 14 | 0.986 |
| 140 | 140 | 0.51 |
| 141 | 141 | 0.617 |
| 142 | 142 | 0.88 |
| 143 | 143 | 0.0185 |
| 144 | 144 | 0.88 |
| 145 | 145 | 0.284 |
| 146 | 146 | 0.531 |
| 147 | 147 | 0.714 |
| 148 | 148 | 0.318 |
| 149 | 149 | 0.105 |
| 15 | 15 | 0.0684 |
| 150 | 150 | 0.122 |
| 151 | 151 | 0.694 |
| 152 | 152 | 0.0888 |
| 153 | 153 | 0.833 |
| 154 | 154 | 0.434 |
| 155 | 155 | 0.884 |
| 156 | 156 | 0.286 |
| 157 | 157 | 0.366 |
| 158 | 158 | 0.37 |
| 159 | 159 | 0.0106 |
| 16 | 16 | 0.0397 |
| 160 | 160 | 0.2 |
| 161 | 161 | 0.213 |
| 162 | 162 | 0.936 |
| 163 | 163 | 0.632 |
| 164 | 164 | 0.0172 |
| 165 | 165 | 0.214 |
| 166 | 166 | 0.877 |
| 167 | 167 | 0.985 |
| 168 | 168 | 0.494 |
| 169 | 169 | 0.0137 |
| 17 | 17 | 0.091 |
| 18 | 18 | 0.0774 |
| 19 | 19 | 0.281 |
| 2 | 2 | 0.804 |
| 20 | 20 | 0.233 |
| 21 | 21 | 0.0583 |
| 22 | 22 | 0.256 |
| 23 | 23 | 0.356 |
| 24 | 24 | 0.0374 |
| 25 | 25 | 0.54 |
| 26 | 26 | 6.14321e-4 |
| 27 | 27 | 0.514 |
| 28 | 28 | 0.826 |
| 29 | 29 | 0.00751 |
| 3 | 3 | 0.0611 |
| 30 | 30 | 0.926 |
| 31 | 31 | 0.93 |
| 32 | 32 | 0.015 |
| 33 | 33 | 0.0584 |
| 34 | 34 | 0.687 |
| 35 | 35 | 0.531 |
| 36 | 36 | 0.246 |
| 37 | 37 | 0.05 |
| 38 | 38 | 0.367 |
| 39 | 39 | 0.293 |
| 4 | 4 | 0.827 |
| 40 | 40 | 0.0589 |
| 41 | 41 | 0.212 |
| 42 | 42 | 0.242 |
| 43 | 43 | 0.137 |
| 44 | 44 | 0.153 |
| 45 | 45 | 0.644 |
| 46 | 46 | 0.0398 |
| 47 | 47 | 0.072 |
| 48 | 48 | 0.0478 |
| 49 | 49 | 0.278 |
| 5 | 5 | 0.723 |
| 50 | 50 | 0.418 |
| 51 | 51 | 0.303 |
| 52 | 52 | 0.546 |
| 53 | 53 | 0.721 |
| 54 | 54 | 0.437 |
| 55 | 55 | 0.493 |
| 56 | 56 | 0.467 |
| 57 | 57 | 0.353 |
| 58 | 58 | 0.318 |
| 59 | 59 | 0.0609 |
| 6 | 6 | 0.677 |
| 60 | 60 | 0.0734 |
| 61 | 61 | 0.0893 |
| 62 | 62 | 0.141 |
| 63 | 63 | 0.201 |
| 64 | 64 | 0.15 |
| 65 | 65 | 0.244 |
| 66 | 66 | 0.123 |
| 67 | 67 | 0.391 |
| 68 | 68 | 0.184 |
| 69 | 69 | 0.339 |
| 7 | 7 | 0.0686 |
| 70 | 70 | 0.0349 |
| 71 | 71 | 0.00679 |
| 72 | 72 | 0.289 |
| 73 | 73 | 0.0464 |
| 74 | 74 | 0.873 |
| 75 | 75 | 0.0315 |
| 76 | 76 | 0.379 |
| 77 | 77 | 0.163 |
| 78 | 78 | 0.00108 |
| 79 | 79 | 0.289 |
| 8 | 8 | 0.061 |
| 80 | 80 | 0.267 |
| 81 | 81 | 0.494 |
| 82 | 82 | 0.665 |
| 83 | 83 | 0.0385 |
| 84 | 84 | 0.603 |
| 85 | 85 | 0.451 |
| 86 | 86 | 0.177 |
| 87 | 87 | 4.04906e-4 |
| 88 | 88 | 0.742 |
| 89 | 89 | 0.178 |
| 9 | 9 | 0.367 |
| 90 | 90 | 0.0917 |
| 91 | 91 | 0.701 |
| 92 | 92 | 0.459 |
| 93 | 93 | 0.663 |
| 94 | 94 | 0.139 |
| 95 | 95 | 0.0184 |
| 96 | 96 | 0.923 |
| 97 | 97 | 0.654 |
| 98 | 98 | 0.2 |
| 99 | 99 | 0.51 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12322
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0011487 human locus coeruleus- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0002148 (locus ceruleus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0006331 (brainstem nucleus)
0009662 (hindbrain nucleus)
0000125 (neural nucleus)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011487 (human locus coeruleus- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
