FFCP PHASE1:Hg19::chrX:69643047..69643060,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54857|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25974|TSSclassifier=S|UniProt=Q9HCC8|association_with_transcript=56bp_to_ENST00000374382,uc004dyh.2,uc010nkx.1,uc010nky.1,uc011mpk.1,uc011mpl.1,uc011mpm.1_5end|coexpression_cluster_id=C4878|description=CAGE_peak_2_at_GDPD2_5end|id=chrX:69643047..69643060,+|ontology_enrichment_celltype=CL:0000047!4.43e-18!8;CL:0002319!9.62e-15!25;CL:0000540!6.50e-14!6;CL:0000031!6.50e-14!6;CL:0000404!6.50e-14!6;CL:0000128!1.97e-13!7;CL:0000126!1.97e-13!7;CL:0000127!1.97e-13!7;CL:0002453!1.97e-13!7;CL:0002322!2.06e-12!5;CL:0000221!1.48e-08!71;CL:0000133!3.65e-08!59;CL:0002605!2.51e-07!3|ontology_enrichment_celltype_v019=CL:0002322;8.53e-22;5!CL:0000540;5.67e-12;6!CL:0000404;5.67e-12;6!CL:0000047;1.35e-09;2!CL:0002319;4.95e-09;25!CL:0002321;4.62e-07;15|ontology_enrichment_celltype_v019_2=CL:0002322,1.13e-21,5;CL:0000047,3.56e-19,8;CL:0000540,4.80e-12,6;CL:0000031,4.80e-12,6;CL:0000404,4.80e-12,6;CL:0002319,5.63e-09,25|ontology_enrichment_development_v019=CL:0000031;5.67e-12;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.93e-91!82;UBERON:0005743!6.65e-89!86;UBERON:0001049!4.93e-87!57;UBERON:0005068!4.93e-87!57;UBERON:0006241!4.93e-87!57;UBERON:0007135!4.93e-87!57;UBERON:0000073!5.36e-79!94;UBERON:0001016!5.36e-79!94;UBERON:0002616!5.40e-73!59;UBERON:0003075!3.52e-68!86;UBERON:0007284!3.52e-68!86;UBERON:0000955!6.23e-68!69;UBERON:0006238!6.23e-68!69;UBERON:0002346!1.83e-64!90;UBERON:0002780!3.03e-63!41;UBERON:0001890!3.03e-63!41;UBERON:0006240!3.03e-63!41;UBERON:0003080!1.66e-61!42;UBERON:0002020!4.48e-54!34;UBERON:0003528!4.48e-54!34;UBERON:0001893!9.17e-54!34;UBERON:0002791!4.62e-52!33;UBERON:0003056!9.86e-52!61;UBERON:0001869!8.65e-50!32;UBERON:0004121!1.73e-47!169;UBERON:0000924!5.55e-46!173;UBERON:0006601!5.55e-46!173;UBERON:0000033!1.02e-45!123;UBERON:0000153!1.45e-44!129;UBERON:0007811!1.45e-44!129;UBERON:0000956!3.43e-36!25;UBERON:0000203!3.43e-36!25;UBERON:0007023!1.67e-31!115;UBERON:0002619!1.36e-30!22;UBERON:0001950!1.16e-26!20;UBERON:0003076!2.04e-25!15;UBERON:0003057!2.04e-25!15;UBERON:0004733!9.82e-20!12;UBERON:0002028!9.82e-20!12;UBERON:0007277!9.82e-20!12;UBERON:0002420!1.39e-19!9;UBERON:0007245!1.39e-19!9;UBERON:0010009!1.39e-19!9;UBERON:0010011!1.39e-19!9;UBERON:0000454!1.39e-19!9;UBERON:0002308!1.93e-19!9;UBERON:0000125!1.93e-19!9;UBERON:0004732!5.17e-18!13;UBERON:0000025!1.34e-16!194;UBERON:0000064!2.36e-15!219;UBERON:0009663!2.53e-15!7;UBERON:0002680!1.02e-13!9;UBERON:0001895!1.02e-13!9;UBERON:0010092!1.02e-13!9;UBERON:0002298!1.85e-13!8;UBERON:0001871!2.04e-13!7;UBERON:0004111!4.28e-12!241;UBERON:0000349!5.38e-12!5;UBERON:0000477!2.58e-11!286;UBERON:0001894!1.25e-10!7;UBERON:0006222!1.25e-10!7;UBERON:0000475!1.81e-10!365;UBERON:0000483!1.88e-10!309;UBERON:0000119!3.26e-10!312;UBERON:0000369!1.65e-09!4;UBERON:0002435!1.65e-09!4;UBERON:0000204!1.65e-09!4;UBERON:0010082!1.65e-09!4;UBERON:0000922!6.77e-09!612;UBERON:0000200!8.33e-09!6;UBERON:0002037!5.04e-08!6;UBERON:0006215!5.04e-08!6;UBERON:0001896!7.34e-08!3;UBERON:0005290!7.34e-08!3;UBERON:0010096!7.34e-08!3;UBERON:0000988!1.24e-07!3;UBERON:0005383!1.51e-07!3;UBERON:0005382!1.51e-07!3;UBERON:0006331!1.55e-07!3;UBERON:0001872!1.88e-07!5;UBERON:0002240!2.20e-07!3;UBERON:0000468!2.61e-07!659;UBERON:0002771!3.33e-07!3;UBERON:0002021!3.76e-07!5;UBERON:0000062!4.48e-07!511|ontology_enrichment_uberon_v019=UBERON:0003528;2.07e-36;34!UBERON:0002020;2.07e-36;34!UBERON:0002791;5.47e-33;32!UBERON:0001893;2.76e-32;34!UBERON:0001869;3.79e-32;32!UBERON:0000073;1.02e-30;53!UBERON:0002616;1.02e-30;53!UBERON:0002780;1.21e-30;41!UBERON:0001890;1.21e-30;41!UBERON:0000956;2.80e-24;25!UBERON:0000203;2.80e-24;25!UBERON:0002420;1.33e-21;9!UBERON:0007245;1.33e-21;9!UBERON:0010009;1.33e-21;9!UBERON:0010011;1.33e-21;9!UBERON:0000454;1.33e-21;9!UBERON:0000125;1.80e-21;9!UBERON:0002308;1.80e-21;9!UBERON:0002619;1.21e-19;22!UBERON:0001017;2.33e-18;75!UBERON:0000955;1.03e-17;68!UBERON:0001950;1.03e-17;20!UBERON:0002298;4.10e-17;6!UBERON:0001016;1.39e-15;83!UBERON:0001871;9.29e-15;6!UBERON:0009663;2.01e-14;7!UBERON:0000349;6.32e-14;5!UBERON:0001896;5.52e-13;3!UBERON:0005290;5.52e-13;3!UBERON:0000369;7.37e-10;4!UBERON:0002435;7.37e-10;4!UBERON:0000204;7.37e-10;4!UBERON:0001876;1.68e-09;2!UBERON:0001897;1.68e-09;2!UBERON:0010225;1.68e-09;2!UBERON:0002148;2.51e-09;2!UBERON:0006331;2.51e-09;2!UBERON:0009662;2.51e-09;2!UBERON:0001875;5.12e-09;2!UBERON:0006514;5.12e-09;2!UBERON:0004733;1.98e-08;12!UBERON:0002028;1.98e-08;12!UBERON:0004732;9.26e-08;13!UBERON:0002106;3.52e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.57e-54,81;UBERON:0001016,4.25e-48,89;UBERON:0001049,5.31e-47,56;UBERON:0005068,5.31e-47,56;UBERON:0006241,5.31e-47,56;UBERON:0007135,5.31e-47,56;UBERON:0000073,6.27e-46,53;UBERON:0002616,6.27e-46,53;UBERON:0003528,1.41e-42,34;UBERON:0002020,1.41e-42,34;UBERO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0,0,0.248298857183432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@GDPD2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=54857 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25974 | |||
|TSSclassifier=S | |||
|UniProt=Q9HCC8 | |||
|association_with_transcript=56bp_to_ENST00000374382,uc004dyh.2,uc010nkx.1,uc010nky.1,uc011mpk.1,uc011mpl.1,uc011mpm.1_5end | |||
|coexpression_cluster_id=C4878 | |||
|description=CAGE_peak_2_at_GDPD2_5end | |||
|id=chrX:69643047..69643060,+ | |||
|ontology_enrichment_celltype=CL:0000047!4.43e-18!8;CL:0002319!9.62e-15!25;CL:0000540!6.50e-14!6;CL:0000031!6.50e-14!6;CL:0000404!6.50e-14!6;CL:0000128!1.97e-13!7;CL:0000126!1.97e-13!7;CL:0000127!1.97e-13!7;CL:0002453!1.97e-13!7;CL:0002322!2.06e-12!5;CL:0000221!1.48e-08!71;CL:0000133!3.65e-08!59;CL:0002605!2.51e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.53e-22;5!CL:0000540;5.67e-12;6!CL:0000404;5.67e-12;6!CL:0000047;1.35e-09;2!CL:0002319;4.95e-09;25!CL:0002321;4.62e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.13e-21,5;CL:0000047,3.56e-19,8;CL:0000540,4.80e-12,6;CL:0000031,4.80e-12,6;CL:0000404,4.80e-12,6;CL:0002319,5.63e-09,25 | |||
|ontology_enrichment_development_v019=CL:0000031;5.67e-12;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p2@GDPD2 | |||
}} |
Revision as of 12:24, 14 September 2013
Short description: | p2@GDPD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GDPD2_5end |
Coexpression cluster: | C4878_spleen_H9_HES3GFP_iPS_hippocampus_spinal_Neural |
Association with transcript: | 56bp_to_ENST00000374382, uc004dyh.2, uc010nkx.1, uc010nky.1, uc011mpk.1, uc011mpl.1, uc011mpm.1_5end |
EntrezGene: | GDPD2 |
HGNC: | 25974 |
UniProt: | Q9HCC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.13e-21 | 5 |
neuronal stem cell | 3.56e-19 | 8 |
neuron | 4.80e-12 | 6 |
neuroblast | 4.80e-12 | 6 |
electrically signaling cell | 4.80e-12 | 6 |
neural cell | 5.63e-09 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.