Personal tools

Coexpression cluster:C2722: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 8: Line 8:
|tf_chipseq_enrich=BHLHE40#8553;4:44.8718135469774:2.46312701995675e-07:1.28623261418632e-05!GATA2#2624;4:12.744931733554:3.78864877853583e-05:0.000723104330741053!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0244734272452996!TRIM28#10155;4:18.5905250452625:8.36730015875654e-06:0.000230694947539698!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00508575644504163!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.00068219420604376
|tf_chipseq_enrich=BHLHE40#8553;4:44.8718135469774:2.46312701995675e-07:1.28623261418632e-05!GATA2#2624;4:12.744931733554:3.78864877853583e-05:0.000723104330741053!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0244734272452996!TRIM28#10155;4:18.5905250452625:8.36730015875654e-06:0.000230694947539698!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00508575644504163!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.00068219420604376
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,1.11624e-05,0.164339,0.193153,0.0816702,0.183412,0.128744,1.08043e-06,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,6.47665e-05,0.00783157,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.00836498,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.000576784,0.158244,0.19996,0.00262518,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.00426281,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.00410045,0.0892037,0.116917,3.00498e-05,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.005218,0.0562614,0.0118782,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.00121525,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.000278572,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,3.7285e-05,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,3.95556e-05,0.262198,9.09875e-05,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.00126344,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.0476129,9.88091e-07,0.0447121,0.291455,0.124982,0.152417,0.192028,0.000978216,0.149398,0.0530169,0.000872371,0.00145408,0.00173649,0.0293007,0.179282,0.00166778,0.0715212,0.105131,0.118265,0.182591,0.0300065,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.0114296,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.01681,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.0244227,0.132273,0.0830988,0.134907,0.184613,0.0252658,0.202467,0.208718,0.0972471,0.000856548,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.137848,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,5.22606e-06,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.129196,0.15291,0.206234,0.238926,0.239646,0.128521,0.00864814,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.000220217,0.12083,0.000691559,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.0314217,0.810881,0.869559,0.0479295,0.668426,0.901171,0.888682,0.018014,0.0455198,0.000807236,0.0457383,0.464128,0.389374,0.22808,0.414547,0.489273,0.413223,0.084046,0.720642,0.000954956,0.0115831,0.500422,0.49089,0.687176,0.0348478,1.0694e-05,0.122191,0.234628,0.520726,2.14441e-05,0.41477,0.279946,0.524104,0.467825,0.563725,0.751064,0.0806606,0.624969,0.0249003,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.708425,0.00114691,0.395864,0.0295357,0.368633,0.547291,0.682118,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.714007,0.0301914,0.225357,0.899283,0.840703,0.0696107,0.302142,0.0313032,0.432689,0.272581,0.000940291,0.145459,0.606382,0.617741,0.626346,0.0565705,0.356561,0.573659,0.211506,0.0883859,0.00016016,0.238465,0.00156752,0.853221,0.6873,0.508325,0.187096,0.651927,0.28972,0.54723,0.280307,0.393583,0.076625,0.0596868,0.00500916,0.293026,0.753513,0.0326188,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,8.99154e-05,0.888839,0.525923,0.000449587,0.421082,0.00338934,0.00163829,0.307342,0.517933,0.584705,0.517001,0.620475,0.926442,0.0023737,0.0189509,6.81833e-05,0.477589,0.46699,0.546448,0.198922,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.000398304,0.651295,0.370995,0.360161,0.429696,0.00160583,0.0015881,0.706685,0.606408,0.259338,0.00116279,0.333725,0.447838,0.289666,0.500627,0.513045,0.00341265,0.565545,0.845507,0.00387002,0.629795,0.754776,0.000146586,0.341771,0.424526,0.657528,0.356381,0.184395,0.55524,0.624689,0.00174769,0.000544535,0.462531,0.296994,0.244339,0.00713433,0.0786167,0.261511,0.729876,0.433821,0.64428,0.436806,0.0115435,0.499072,0.396083,0.734628,0.397546,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.540322,0.247151,0.000587132,0.365815,0.0576261,0.382413,3.81315e-05,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.0131382,0.354433,0.48311,0.0614918,0.219485,0.149782,0.00983379,0.118103,0.113892,0.000100669,0.140201,5.08195e-07,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.000381023,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.00273651,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0024515,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.0367692,0.064656,0.226143,0.460406,0.0438521,0.112715,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.0106672,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0027083,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.0197215,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.000993709,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.107849,0.758305,0.0430331,0.365775,0.155708,0.248017,0.028736,0.652972,0.0760151,0.0629459,0.00483066,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0779623,0.0471607,0.163865,0.0278061,0.960445,0.499775,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.00186221,0.144185,0.0925862,0.289561,0.00154813,0.049937,0.172796,0.0595495,6.36345e-05,0.149346,1.07545e-05,0.22302,0.137423,0.284016,0.0754883,0.00576932,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.00758581,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,5.34167e-05,0.291976,0.320355,0.364334,0.15547,0.000243487,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,5.83574e-06,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.00461817,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.459091,0.0466753,0.502211,0.00555197,0.282366,0.0434876,0.000444661,0.170061,0.189126,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.747471,0.0074346,0.818701,0.14198,0.0131065,0.603763,0.541914,0.0778742,0.938109,0.514482,0.0470729,0.622694,0.722684,0.478691,0.0744652,0.608176,0.290133,0.824761,0.0111989,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.0108102,0.328518,0.545608,0.0065017,0.324103,0.483764,0.829658,0.784052,0.209437,0.843495,0.748403,0.598945,0.882403,0.464001,0.336867,0.579004,0.870272,0.839946,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.116739,0.212239,0.294954,0.156999,0.0742603,0.00547498,0.39549,0.234254,0.357409,0.86719,0.721266,0.000785185,0.252827,0.404625,0.759068,0.00251166,0.715362,0.479581,0.62689,0.884725,0.642173,0.044968,0.512545,0.00627383,0.563206,0.829402,0.684899,0.263302,0.192292,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.217863,3.73667e-10,0.417131,0.0255104,0.627953,0.503881,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.131322,0.187223,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.0650585,0.478745,0.611661,0.000676019,0.475047,0.557967,0.608127,0.000387312,0.612712,0.2536,0.246827,0.202347,0.70712,0.387134,0.00990479,0.0105234,0.668972,0.00187124,0.148933,0.346636,0.457747,0.00100333,0.137708,0.579645,0.447581,1.94873e-06,0.254628,0.713293,0.139532,0.416962,0.632833,7.18861e-07,0.387805,0.00382285,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.000852417,0.0239343,0.246234,0.02408,0.281295,0.0394002,0.118257,0.125087,0.215123,0.00727088,0.469461,0.325254,0.0392149,0.546295,0.231754,0.249415,0.0445044,0.285648,0.10809,0.391071,0.279553,0.25563,0.240967,0.0137102,0.036192,0.0432189,0.122439,0.16188,0.23235,0.00521493,0.0713545,0.112422,0.170886,0.267687,0.0560879,0.284866,0.0887542,0.267811,0.000875654,2.4045e-05,0.0191872,0.293546,0.210125,0.0478543,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.00888732,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.00446773,0.205513,0.282389,0.251421,0.162089,0.0617695,0.387837,0.029604,0.207281,0.327401,0.195748,0.27845,3.50438e-05,0.000182735,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.0460134,0.313858,0.223773,0.25788,0.181895,0.035332,0.30702,5.0346e-09,0.170837,0.327002,0.28543,0.00220735,0.228479,0.00844447,0.259989,0.390754,0.0725176,0.279739,6.51849e-06,0.259901,0.139723,0.0708274,0.0710478,0.196248,5.25768e-06,0.0539258,0.0709978,0.0944985,0.000809519,0.0406836,0.000197374,0.0498554,0.244395,0.106889,0.00865251,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.0109087,0.433518,0.184359,0.334474,0.325785,0.257476,0.0472356,0.376537,0.00739196,0.229571,0.0105454,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.0331484,0.35674,0.35852,0.318525,0.00192326,0.287217,0.122782,0.410951,0.00513495,0.266974,0.125746,7.79807e-06,0.0926658,0.222091,0.205977,0.34423,0.0936726,0.0671916,0.132374,0.285122,0.0280766,0.00166967,0.0424072,0.321965,0.00385437,0.000388714
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,1.11624e-05,0.164339,0.193153,0.0816702,0.183412,0.128744,1.08043e-06,0.141416,0.0323255,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,6.47665e-05,0.00783157,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.00836498,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.000576784,0.158244,0.19996,0.00262518,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.00426281,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.00410045,0.0892037,0.116917,3.00498e-05,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.005218,0.0562614,0.0118782,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.00121525,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.000278572,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,3.7285e-05,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,3.95556e-05,0.262198,9.09875e-05,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.00126344,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.0476129,9.88091e-07,0.0447121,0.291455,0.124982,0.152417,0.192028,0.000978216,0.149398,0.0530169,0.000872371,0.00145408,0.00173649,0.0293007,0.179282,0.00166778,0.0715212,0.105131,0.118265,0.182591,0.0300065,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.0120302,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.0114296,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.01681,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.0244227,0.132273,0.0830988,0.134907,0.184613,0.0252658,0.202467,0.208718,0.0972471,0.000856548,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.137848,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,5.22606e-06,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.129196,0.15291,0.206234,0.238926,0.239646,0.128521,0.00864814,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.000220217,0.12083,0.000691559,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.0314217,0.810881,0.869559,0.0479295,0.668426,0.901171,0.888682,0.018014,0.0455198,0.000807236,0.0457383,0.464128,0.389374,0.22808,0.414547,0.489273,0.413223,0.084046,0.720642,0.000954956,0.0115831,0.500422,0.49089,0.687176,0.0348478,1.0694e-05,0.122191,0.234628,0.520726,2.14441e-05,0.41477,0.279946,0.524104,0.467825,0.563725,0.751064,0.0806606,0.624969,0.0249003,0.511459,0.586668,0.322903,0.350886,0.380582,0.583749,0.398372,0.286293,0.606558,0.708425,0.00114691,0.395864,0.0295357,0.368633,0.547291,0.682118,0.512763,0.369971,0.578349,0.537928,0.464342,0.683088,0.714007,0.0301914,0.225357,0.899283,0.840703,0.0696107,0.302142,0.0313032,0.432689,0.272581,0.000940291,0.145459,0.606382,0.617741,0.626346,0.0565705,0.356561,0.573659,0.211506,0.0883859,0.00016016,0.238465,0.00156752,0.853221,0.6873,0.508325,0.187096,0.651927,0.28972,0.54723,0.280307,0.393583,0.076625,0.0596868,0.00500916,0.293026,0.753513,0.0326188,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,8.99154e-05,0.888839,0.525923,0.000449587,0.421082,0.00338934,0.00163829,0.307342,0.517933,0.584705,0.517001,0.620475,0.926442,0.0023737,0.0189509,6.81833e-05,0.477589,0.46699,0.546448,0.198922,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.000398304,0.651295,0.370995,0.360161,0.429696,0.00160583,0.0015881,0.706685,0.606408,0.259338,0.00116279,0.333725,0.447838,0.289666,0.500627,0.513045,0.00341265,0.565545,0.845507,0.00387002,0.629795,0.754776,0.000146586,0.341771,0.424526,0.657528,0.356381,0.184395,0.55524,0.624689,0.00174769,0.000544535,0.462531,0.296994,0.244339,0.00713433,0.0786167,0.261511,0.729876,0.433821,0.64428,0.436806,0.0115435,0.499072,0.396083,0.734628,0.397546,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.00833305,0.540322,0.247151,0.000587132,0.365815,0.0576261,0.382413,3.81315e-05,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.0131382,0.354433,0.48311,0.0614918,0.219485,0.149782,0.00983379,0.118103,0.113892,0.000100669,0.140201,5.08195e-07,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.0301295,0.145546,0.000381023,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.00273651,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.00419343,0.03989,0.171436,0.05892,0.0024515,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.0367692,0.064656,0.226143,0.460406,0.0438521,0.112715,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.0106672,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0027083,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.0197215,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.000993709,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.107849,0.758305,0.0430331,0.365775,0.155708,0.248017,0.028736,0.652972,0.0760151,0.0629459,0.00483066,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0779623,0.0471607,0.163865,0.0278061,0.960445,0.499775,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.00186221,0.144185,0.0925862,0.289561,0.00154813,0.049937,0.172796,0.0595495,6.36345e-05,0.149346,1.07545e-05,0.22302,0.137423,0.284016,0.0754883,0.00576932,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.00758581,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,5.34167e-05,0.291976,0.320355,0.364334,0.15547,0.000243487,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,5.83574e-06,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.00461817,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.0368787,0.459091,0.0466753,0.502211,0.00555197,0.282366,0.0434876,0.000444661,0.170061,0.189126,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.747471,0.0074346,0.818701,0.14198,0.0131065,0.603763,0.541914,0.0778742,0.938109,0.514482,0.0470729,0.622694,0.722684,0.478691,0.0744652,0.608176,0.290133,0.824761,0.0111989,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.0108102,0.328518,0.545608,0.0065017,0.324103,0.483764,0.829658,0.784052,0.209437,0.843495,0.748403,0.598945,0.882403,0.464001,0.336867,0.579004,0.870272,0.839946,0.586133,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.116739,0.212239,0.294954,0.156999,0.0742603,0.00547498,0.39549,0.234254,0.357409,0.86719,0.721266,0.000785185,0.252827,0.404625,0.759068,0.00251166,0.715362,0.479581,0.62689,0.884725,0.642173,0.044968,0.512545,0.00627383,0.563206,0.829402,0.684899,0.263302,0.192292,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.217863,3.73667e-10,0.417131,0.0255104,0.627953,0.503881,0.124057,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.131322,0.187223,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.0650585,0.478745,0.611661,0.000676019,0.475047,0.557967,0.608127,0.000387312,0.612712,0.2536,0.246827,0.202347,0.70712,0.387134,0.00990479,0.0105234,0.668972,0.00187124,0.148933,0.346636,0.457747,0.00100333,0.137708,0.579645,0.447581,1.94873e-06,0.254628,0.713293,0.139532,0.416962,0.632833,7.18861e-07,0.387805,0.00382285,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.000852417,0.0239343,0.246234,0.02408,0.281295,0.0394002,0.118257,0.125087,0.215123,0.00727088,0.469461,0.325254,0.0392149,0.546295,0.231754,0.249415,0.0445044,0.285648,0.10809,0.391071,0.279553,0.25563,0.240967,0.0137102,0.036192,0.0432189,0.122439,0.16188,0.23235,0.00521493,0.0713545,0.112422,0.170886,0.267687,0.0560879,0.284866,0.0887542,0.267811,0.000875654,2.4045e-05,0.0191872,0.293546,0.210125,0.0478543,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.00888732,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.00446773,0.205513,0.282389,0.251421,0.162089,0.0617695,0.387837,0.029604,0.207281,0.327401,0.195748,0.27845,3.50438e-05,0.000182735,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.0460134,0.313858,0.223773,0.25788,0.181895,0.035332,0.30702,5.0346e-09,0.170837,0.327002,0.28543,0.00220735,0.228479,0.00844447,0.259989,0.390754,0.0725176,0.279739,6.51849e-06,0.259901,0.139723,0.0708274,0.0710478,0.196248,5.25768e-06,0.0539258,0.0709978,0.0944985,0.000809519,0.0406836,0.000197374,0.0498554,0.244395,0.106889,0.00865251,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.0109087,0.433518,0.184359,0.334474,0.325785,0.257476,0.0472356,0.376537,0.00739196,0.229571,0.0105454,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.251128,0.0331484,0.35674,0.35852,0.318525,0.00192326,0.287217,0.122782,0.410951,0.00513495,0.266974,0.125746,7.79807e-06,0.0926658,0.222091,0.205977,0.34423,0.0936726,0.0671916,0.132374,0.285122,0.0280766,0.00166967,0.0424072,0.321965,0.00385437,0.000388714
|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,1.75588,0.534346,0.739643,1.92131,0.395818,0.392841,0.151681,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,1.18793,0.938585,0.223552,0.581762,0.975621,0.731221,0.528529,0.632849,4.87831,1.53358,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,0.49475,0.0842336,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,1.63146,0.53106,0.0946706,1.49501,0.822818,0.694903,0.515703,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,2.45549,1.62905,0.650393,0.402607,0.248021,1.32819,0.336329,0.321165,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,0.109222,0.6318,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,2.27689,0.456994,0.934671,1.15558,2.16273,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,3.52745,0.717043,1.46636,0.489254,0.12452,0.681522,0.988625,1.97727,1.31973,0.932085,2.92401,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,1.15964,1.24863,0.68598,1.37788,0.852645,1.52813,0.774456,3.96568,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,1.58937,0.437774,0.234974,0.175846,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.0401987
}}
}}

Revision as of 15:40, 26 November 2012


Full id: C2722_skeletal_Mast_leiomyoma_bladder_Smooth_uterus_placenta



Phase1 CAGE Peaks

Hg19::chr3:141150883..141150961,+p6@ZBTB38
Hg19::chr3:141150971..141150978,+p60@ZBTB38
Hg19::chr3:141151009..141151033,+p10@ZBTB38
Hg19::chr3:141151044..141151053,+p51@ZBTB38


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
adult organism5.10e-57114
neural tube1.93e-2956
neural rod1.93e-2956
future spinal cord1.93e-2956
neural keel1.93e-2956
regional part of nervous system4.18e-2853
regional part of brain4.18e-2853
regional part of forebrain3.12e-2541
forebrain3.12e-2541
anterior neural tube3.12e-2541
future forebrain3.12e-2541
nervous system5.53e-2489
brain4.33e-2368
future brain4.33e-2368
central nervous system2.39e-2281
organ system subdivision5.24e-21223
neural plate6.67e-2082
presumptive neural plate6.67e-2082
telencephalon8.42e-2034
neurectoderm9.97e-2086
brain grey matter1.48e-1934
gray matter1.48e-1934
regional part of telencephalon7.85e-1832
cerebral hemisphere8.46e-1832
pre-chordal neural plate1.32e-1661
ecto-epithelium3.47e-15104
regional part of cerebral cortex7.56e-1522
neocortex1.42e-1420
ectoderm-derived structure1.50e-13171
ectoderm1.50e-13171
presumptive ectoderm1.50e-13171
structure with developmental contribution from neural crest2.46e-13132
cerebral cortex1.45e-1225
pallium1.45e-1225
organ2.40e-12503
anatomical cluster5.11e-12373
multi-tissue structure4.60e-11342
anatomical conduit1.99e-09240
basal ganglion2.06e-099
nuclear complex of neuraxis2.06e-099
aggregate regional part of brain2.06e-099
collection of basal ganglia2.06e-099
cerebral subcortex2.06e-099
developing anatomical structure2.48e-09581
embryonic structure3.56e-09564
gyrus3.57e-096
embryo4.06e-09592
germ layer6.58e-09560
germ layer / neural crest6.58e-09560
embryonic tissue6.58e-09560
presumptive structure6.58e-09560
germ layer / neural crest derived structure6.58e-09560
epiblast (generic)6.58e-09560
neural nucleus7.01e-099
nucleus of brain7.01e-099
reproductive structure4.14e-0859
reproductive system4.14e-0859
brainstem9.24e-086
tube1.87e-07192
multi-cellular organism1.87e-07656
anatomical system2.01e-07624
anatomical group2.30e-07625
telencephalic nucleus4.40e-077
diencephalon5.38e-077
future diencephalon5.38e-077


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BHLHE40#8553444.87181354697742.46312701995675e-071.28623261418632e-05
GATA2#2624412.7449317335543.78864877853583e-050.000723104330741053
TBP#690843.706770687096390.005296377814784350.0244734272452996
TRIM28#10155418.59052504526258.36730015875654e-060.000230694947539698
USF1#739146.361499277207960.0006105011399140830.00508575644504163
USF2#7392412.99219738506963.50833029870167e-050.00068219420604376



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C2722&oldid=2559059"