FFCP PHASE1:Hg19::chr2:45169193..45169219,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |||
|TSSclassifier=weak | |||
|UniProt=O95343 | |||
|association_with_transcript=156bp_to_NM_005413,uc002run.1_5end | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_3_at_SIX3_5end | |||
|id=chr2:45169193..45169219,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.44e-10!5;CL:0000306!1.12e-09!4;CL:0002222!1.12e-09!4;CL:0002224!1.12e-09!4;CL:0000075!6.59e-09!27;CL:0002586!7.25e-08!3;CL:0000064!8.26e-08!3;CL:0005012!8.26e-08!3;CL:0000067!8.26e-08!3;CL:0002304!8.26e-08!3;CL:0000147!7.13e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.29e-16;5!CL:0000306;2.58e-15;4!CL:0002222;2.58e-15;4!CL:0002224;2.58e-15;4!CL:0002586;2.78e-12;3!CL:0000064;3.66e-12;3!CL:0000067;3.66e-12;3!CL:0005012;3.66e-12;3!CL:0002304;3.66e-12;3!CL:0000147;7.39e-12;14!CL:0000075;1.43e-11;27!CL:0002321;3.82e-10;15!CL:0000149;2.65e-09;4!CL:0002549;4.94e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.82e-16,5;CL:0000306,2.41e-15,4;CL:0002222,2.41e-15,4;CL:0002224,2.41e-15,4;CL:0002586,2.84e-12,3;CL:0000064,3.54e-12,3;CL:0000067,3.54e-12,3;CL:0005012,3.54e-12,3;CL:0002304,3.54e-12,3;CL:0000147,8.91e-12,14;CL:0000075,1.57e-11,27;CL:0000149,2.69e-09,4;CL:0002549,5.03e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.30e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!3.20e-40!61;UBERON:0002346!1.26e-34!90;UBERON:0003075!3.17e-33!86;UBERON:0007284!3.17e-33!86;UBERON:0000073!2.16e-30!94;UBERON:0001016!2.16e-30!94;UBERON:0005743!5.41e-28!86;UBERON:0002780!2.23e-24!41;UBERON:0001890!2.23e-24!41;UBERON:0006240!2.23e-24!41;UBERON:0000033!4.39e-24!123;UBERON:0007625!5.60e-24!11;UBERON:0003080!1.25e-23!42;UBERON:0000924!9.01e-23!173;UBERON:0006601!9.01e-23!173;UBERON:0001017!9.88e-23!82;UBERON:0002616!2.19e-22!59;UBERON:0000153!2.43e-22!129;UBERON:0007811!2.43e-22!129;UBERON:0000955!4.22e-22!69;UBERON:0006238!4.22e-22!69;UBERON:0004121!1.65e-21!169;UBERON:0000970!1.18e-19!20;UBERON:0002791!3.12e-19!33;UBERON:0002104!1.63e-18!21;UBERON:0001893!1.64e-18!34;UBERON:0002020!2.39e-18!34;UBERON:0003528!2.39e-18!34;UBERON:0001049!2.91e-18!57;UBERON:0005068!2.91e-18!57;UBERON:0006241!2.91e-18!57;UBERON:0007135!2.91e-18!57;UBERON:0000019!7.52e-18!19;UBERON:0000047!7.52e-18!19;UBERON:0004088!7.52e-18!19;UBERON:0003072!7.52e-18!19;UBERON:0003071!7.52e-18!19;UBERON:0004128!7.52e-18!19;UBERON:0000020!1.55e-16!23;UBERON:0001869!3.79e-16!32;UBERON:0001456!8.80e-16!21;UBERON:0001032!1.14e-15!24;UBERON:0004456!1.14e-15!24;UBERON:0009663!3.23e-14!7;UBERON:0002420!4.49e-14!9;UBERON:0007245!4.49e-14!9;UBERON:0010009!4.49e-14!9;UBERON:0010011!4.49e-14!9;UBERON:0000454!4.49e-14!9;UBERON:0002308!1.51e-13!9;UBERON:0000125!1.51e-13!9;UBERON:0000966!8.32e-12!5;UBERON:0005388!8.32e-12!5;UBERON:0001802!8.32e-12!5;UBERON:0005085!2.11e-10!29;UBERON:0000488!8.30e-10!4;UBERON:0010077!1.12e-09!4;UBERON:0005389!1.12e-09!4;UBERON:0000484!1.12e-09!4;UBERON:0002546!1.12e-09!4;UBERON:0000965!1.12e-09!4;UBERON:0001803!1.12e-09!4;UBERON:0003073!1.12e-09!4;UBERON:0005426!1.12e-09!4;UBERON:0000369!2.10e-09!4;UBERON:0002435!2.10e-09!4;UBERON:0000204!2.10e-09!4;UBERON:0010082!2.10e-09!4;UBERON:0001801!2.32e-09!14;UBERON:0002200!5.22e-09!11;UBERON:0006876!5.22e-09!11;UBERON:0000956!7.58e-09!25;UBERON:0000203!7.58e-09!25;UBERON:0007023!3.07e-08!115;UBERON:0001781!7.25e-08!3;UBERON:0001782!7.25e-08!3;UBERON:0005424!7.25e-08!3;UBERON:0001778!8.26e-08!3;UBERON:0001775!8.26e-08!3;UBERON:0001894!1.32e-07!7;UBERON:0006222!1.32e-07!7;UBERON:0005383!1.50e-07!3;UBERON:0005382!1.50e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.12e-39;11!UBERON:0000970;7.45e-34;20!UBERON:0002104;4.54e-32;21!UBERON:0000019;9.94e-31;19!UBERON:0000047;9.94e-31;19!UBERON:0004088;9.94e-31;19!UBERON:0010230;9.94e-31;19!UBERON:0000020;5.76e-29;23!UBERON:0001032;1.31e-27;24!UBERON:0004456;1.31e-27;24!UBERON:0001456;1.72e-27;21!UBERON:0000966;5.59e-19;5!UBERON:0005388;5.59e-19;5!UBERON:0001802;5.59e-19;5!UBERON:0002420;1.77e-18;9!UBERON:0007245;1.77e-18;9!UBERON:0010009;1.77e-18;9!UBERON:0010011;1.77e-18;9!UBERON:0000454;1.77e-18;9!UBERON:0009663;6.89e-18;7!UBERON:0001801;5.43e-16;14!UBERON:0000488;1.53e-15;4!UBERON:0010077;2.58e-15;4!UBERON:0005389;2.58e-15;4!UBERON:0000484;2.58e-15;4!UBERON:0000965;2.58e-15;4!UBERON:0001803;2.58e-15;4!UBERON:0000369;5.76e-15;4!UBERON:0002435;5.76e-15;4!UBERON:0000204;5.76e-15;4!UBERON:0000125;9.27e-14;9!UBERON:0002308;9.27e-14;9!UBERON:0001894;2.73e-12;7!UBERON:0001781;2.78e-12;3!UBERON:0001782;2.78e-12;3!UBERON:0002780;2.99e-12;41!UBERON:0001890;2.99e-12;41!UBERON:0001778;3.66e-12;3!UBERON:0001775;3.66e-12;3!UBERON:0010371;5.42e-12;31!UBERON:0005383;8.72e-12;3!UBERON:0005382;8.72e-12;3!UBERON:0006876;1.40e-11;11!UBERON:0002203;2.33e-10;6!UBERON:0001768;2.33e-10;6!UBERON:0002200;2.33e-10;6!UBERON:0000073;2.02e-08;53!UBERON:0002616;2.02e-08;53!UBERON:0000007;2.30e-08;2!UBERON:0001873;2.30e-08;2!UBERON:0002791;2.44e-08;32!UBERON:0000955;4.15e-08;68!UBERON:0005629;4.94e-08;2!UBERON:0005358;4.94e-08;2!UBERON:0001886;4.94e-08;2!UBERON:0004086;4.94e-08;2!UBERON:0005282;4.94e-08;2!UBERON:0005281;4.94e-08;2!UBERON:0001869;5.07e-08;32!UBERON:0001444;9.06e-08;48!UBERON:0001875;9.74e-08;2!UBERON:0006514;9.74e-08;2!UBERON:0000033;1.42e-07;50!UBERON:0003528;1.56e-07;34!UBERON:0002020;1.56e-07;34!UBERON:0001897;2.06e-07;2!UBERON:0010225;2.06e-07;2!UBERON:0000922;2.22e-07;49!UBERON:0001016;4.02e-07;83!UBERON:0001893;4.09e-07;34!UBERON:0001017;8.31e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.01e-39,11;UBERON:0003056,1.70e-38,61;UBERON:0000970,4.36e-32,21;UBERON:0002104,4.36e-32,21;UBERON:0000019,4.74e-29,20;UBERON:0000047,4.74e-29,20;UBERON:0010312,4.74e-29,20;UBERON:0004088,4.74e-29,20;UBERON:0010230,4.74e-29,20;UBERON:0003072,4.74e-29,20;UBERON:0004128,4.74e-29,20;UBERON:0003071,4.74e-29,20;UBERON:0000020,1.27e-27,24;UBERON:0001032,1.27e-27,24;UBERON:0004456,1.27e-27,24;UBERON:0002346,2.87e-27,86;UBERON:0003075,7.20e-27,82;UBERON:0007284,7.20e-27,82;UBERON:0001456,4.11e-26,22;UBERON:0010371,1.05e-19,104;UBERON:0002420,1.69e-18,9;UBERON:0007245,1.69e-18,9;UBERON:0010009,1.69e-18,9;UBERON:0010011,1.69e-18,9;UBERON:0000454,1.69e-18,9;UBERON:0010314,6.38e-18,132;UBERON:0009663,7.23e-18,7;UBERON:0005085,1.37e-17,31;UBERON:0004121,1.42e-17,171;UBERON:0000924,1.42e-17,171;UBERON:0006601,1.42e-17,171;UBERON:0001801,5.08e-16,14;UBERON:0000966,9.69e-16,6;UBERON:0005388,9.69e-16,6;UBERON:0001802,9.69e-16,6;UBERON:0000488,1.45e-15,4;UBERON:0010077,2.41e-15,4;UBERON:0005389,2.41e-15,4;UBERON:0000484,2.41e-15,4;UBERON:0002546,2.41e-15,4;UBERON:0000965,2.41e-15,4;UBERON:0001803,2.41e-15,4;UBERON:0003073,2.41e-15,4;UBERON:0005426,2.41e-15,4;UBERON:0002780,5.12e-15,41;UBERON:0001890,5.12e-15,41;UBERON:0003080,5.12e-15,41;UBERON:0006240,5.12e-15,41;UBERON:0000369,7.02e-15,4;UBERON:0002435,7.02e-15,4;UBERON:0000204,7.02e-15,4;UBERON:0010082,7.02e-15,4;UBERON:0001016,5.04e-14,89;UBERON:0000125,9.61e-14,9;UBERON:0002308,9.61e-14,9;UBERON:0000955,3.95e-13,68;UBERON:0006238,3.95e-13,68;UBERON:0001017,4.70e-13,81;UBERON:0001894,2.49e-12,7;UBERON:0006222,2.49e-12,7;UBERON:0001782,2.84e-12,3;UBERON:0005424,2.84e-12,3;UBERON:0001778,3.54e-12,3;UBERON:0001775,3.54e-12,3;UBERON:0005383,9.73e-12,3;UBERON:0005382,9.73e-12,3;UBERON:0006876,1.37e-11,11;UBERON:0000073,6.69e-11,53;UBERON:0002616,6.69e-11,53;UBERON:0002203,2.25e-10,6;UBERON:0001768,2.25e-10,6;UBERON:0002200,2.25e-10,6;UBERON:0001049,3.79e-10,56;UBERON:0005068,3.79e-10,56;UBERON:0006241,3.79e-10,56;UBERON:0007135,3.79e-10,56;UBERON:0001444,5.49e-10,49;UBERON:0000033,1.02e-09,56;UBERON:0001781,2.69e-09,4;UBERON:0002791,1.46e-08,32;UBERON:0001869,1.46e-08,32;UBERON:0000153,1.82e-08,62;UBERON:0007811,1.82e-08,62;UBERON:0000007,2.06e-08,2;UBERON:0001873,2.56e-08,2;UBERON:0010122,2.56e-08,2;UBERON:0005629,5.03e-08,2;UBERON:0005358,5.03e-08,2;UBERON:0001886,5.03e-08,2;UBERON:0004086,5.03e-08,2;UBERON:0005282,5.03e-08,2;UBERON:0005281,5.03e-08,2;UBERON:0003528,5.79e-08,34;UBERON:0002020,5.79e-08,34;UBERON:0001893,5.79e-08,34;UBERON:0001875,8.49e-08,2;UBERON:0006514,8.49e-08,2;UBERON:0000076,1.16e-07,8;UBERON:0001897,1.92e-07,2;UBERON:0010225,1.92e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0036519099174,0.821246550437305,0.376627918784408,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.6543949104082,12.8603050528287,15.4589222819902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,2.27036141467397,4.60940739583999,0,0,0,0,0,0,0,0,0,0.619954687054593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,1.98794652482228,2.32387885739037,4.45742536566093,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.7499583252248,0,0,0,0,0,0,20.2063878835383,57.0377592477378,7.27933904262094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01019518401218,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.0031097590784,34.4415377984691,17.8958117065367,0,0.27470839445503,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0,1.94176834799221,0,0,0,0,0,0,2.95405774462077,0,0,0,0,0,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0.520874984799877,7.08593108651071,7.11518987889907,0,0.110579259931225,0,0.438770794307945,0,0,0.615602068030377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,1.72989514525104,2.8193926366473,0.808813595768125,0,4.2167600230561,0,0,0.242780379534093,0,0,0.30607276163049,1.89559738885464,0,0,2.65861549082874,1.323967823502,0.627865836814451,1.19472429772959,0,0.832048038078832,0,0,0,0,0,0,0,0,0,0,15.3666903730762,0,0,0.379864775735272,0,0,0,0,1.87317542300338,3.77970767347522,0.343189995723929,0,0,0,0,0,0,0,1.80126086612937,3.42263447229983,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,1.77064427945048,0,0,0,0,0,0.182248669974074,0,0,0,1.47840471127169,0,0,0,0,0,0,0,0,3.59190574687462,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0.59996218756479,0.960225567247268,0,0,0,0.699397538597222,0.622077260032973,2.42999305476938,0,0.157265941855896,3.49470842214445,1.18812770967818,0,0.619678821295011,0.558644917973244,0,0,0,0,0,3.3399197050159,0,0,0,0,0.0691572524642179,1.45328081068666,0,0,0,0,0,0,0,1.5913297769302,0,0,0,0,0,0,0,0,0,0.19024743058172,1.64092442705466,0,0,0,0.127762427639595,0,0,7.89055285507621,7.96817669729542,0,0.115233987555779,0,0,0,0,0,0,9.74116657479212,0,0,0,0,32.0929683353187,3.47629945811999,0,8.34519707052381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.47032417576815,0,12.0934568419972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65833887891756,1.55149493792843,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0,0,0,0.449126010532934,0,0,0,0,0,0.961705476909699 | |||
|short_description=p3@SIX3 | |||
}} |
Revision as of 02:55, 21 January 2014
Short description: | p3@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 156bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.82e-16 | 5 |
crystallin accumulating cell | 2.41e-15 | 4 |
vertebrate lens cell | 2.41e-15 | 4 |
lens epithelial cell | 2.41e-15 | 4 |
retinal pigment epithelial cell | 2.84e-12 | 3 |
ciliated cell | 3.54e-12 | 3 |
ciliated epithelial cell | 3.54e-12 | 3 |
multi-ciliated epithelial cell | 3.54e-12 | 3 |
non-pigmented ciliary epithelial cell | 3.54e-12 | 3 |
pigment cell | 8.91e-12 | 14 |
columnar/cuboidal epithelial cell | 1.57e-11 | 27 |
visual pigment cell | 2.69e-09 | 4 |
fibroblast of choroid plexus | 5.03e-08 | 2 |