FFCP PHASE1:Hg19::chr3:139258443..139258485,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9919 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=185bp_to_uc010huj.2_5end | |||
|coexpression_cluster_id=C1921 | |||
|description=CAGE_peak_1_at_RBP1_5end | |||
|id=chr3:139258443..139258485,- | |||
|ontology_enrichment_celltype=CL:0002321!3.39e-12!248;CL:0000220!1.08e-11!246;CL:1000449!5.65e-08!16;CL:0000221!1.57e-07!71;CL:0002319!2.68e-07!25;CL:0000393!6.39e-07!60;CL:0000211!6.39e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.32e-08;15!CL:0002319;1.09e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.35e-11,250;CL:1000449,2.80e-08,15;CL:0002319,1.10e-07,25;CL:0000221,1.41e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!8.09e-30!312;UBERON:0000481!9.62e-30!347;UBERON:0000483!9.67e-29!309;UBERON:0000475!2.25e-26!365;UBERON:0000924!1.55e-24!173;UBERON:0006601!1.55e-24!173;UBERON:0005743!3.23e-24!86;UBERON:0004121!4.48e-24!169;UBERON:0004111!5.13e-24!241;UBERON:0000073!4.49e-23!94;UBERON:0001016!4.49e-23!94;UBERON:0000477!8.52e-23!286;UBERON:0000033!2.62e-22!123;UBERON:0001017!8.04e-22!82;UBERON:0002346!1.47e-21!90;UBERON:0000025!2.32e-21!194;UBERON:0003075!2.76e-21!86;UBERON:0007284!2.76e-21!86;UBERON:0000153!2.84e-21!129;UBERON:0007811!2.84e-21!129;UBERON:0000922!3.25e-20!612;UBERON:0000468!4.54e-19!659;UBERON:0002050!2.40e-17!605;UBERON:0005423!2.40e-17!605;UBERON:0000955!3.41e-17!69;UBERON:0006238!3.41e-17!69;UBERON:0000923!6.37e-17!604;UBERON:0005291!6.37e-17!604;UBERON:0006598!6.37e-17!604;UBERON:0002532!6.37e-17!604;UBERON:0000467!1.58e-15!625;UBERON:0000480!2.86e-15!626;UBERON:0002616!3.31e-15!59;UBERON:0003056!5.59e-15!61;UBERON:0001049!1.66e-14!57;UBERON:0005068!1.66e-14!57;UBERON:0006241!1.66e-14!57;UBERON:0007135!1.66e-14!57;UBERON:0000064!2.79e-14!219;UBERON:0005256!9.61e-13!143;UBERON:0000466!1.35e-12!126;UBERON:0000062!3.25e-12!511;UBERON:0001048!6.93e-11!168;UBERON:0007023!3.05e-10!115;UBERON:0000464!9.69e-10!104;UBERON:0002553!1.56e-09!70;UBERON:0002780!1.94e-09!41;UBERON:0001890!1.94e-09!41;UBERON:0006240!1.94e-09!41;UBERON:0003886!2.43e-09!63;UBERON:0003080!2.45e-09!42;UBERON:0003104!2.65e-09!238;UBERON:0009142!2.65e-09!238;UBERON:0005177!3.72e-09!107;UBERON:0002100!5.34e-09!216;UBERON:0003914!5.84e-09!118;UBERON:0003103!9.79e-09!69;UBERON:0003064!1.79e-08!37;UBERON:0001032!2.00e-08!24;UBERON:0004456!2.00e-08!24;UBERON:0000080!2.50e-08!18;UBERON:0002120!2.50e-08!18;UBERON:0004875!2.50e-08!18;UBERON:0005721!2.50e-08!18;UBERON:0005754!2.50e-08!18;UBERON:0007297!2.50e-08!18;UBERON:0006555!2.63e-08!17;UBERON:0005103!2.63e-08!17;UBERON:0000083!2.63e-08!17;UBERON:0009201!2.63e-08!17;UBERON:0004819!2.63e-08!17;UBERON:0006553!2.63e-08!17;UBERON:0003074!2.63e-08!17;UBERON:0003060!2.63e-08!17;UBERON:0000020!3.81e-08!23;UBERON:0004211!5.65e-08!16;UBERON:0001285!5.65e-08!16;UBERON:0007684!5.65e-08!16;UBERON:0003220!5.65e-08!16;UBERON:0004208!5.65e-08!16;UBERON:0002104!7.19e-08!21;UBERON:0003887!8.54e-08!21;UBERON:0002020!9.51e-08!34;UBERON:0003528!9.51e-08!34;UBERON:0001893!1.11e-07!34;UBERON:0000970!1.36e-07!20;UBERON:0002791!1.55e-07!33;UBERON:0001869!3.12e-07!32;UBERON:0004876!3.70e-07!20;UBERON:0005172!4.03e-07!55;UBERON:0005173!4.03e-07!55;UBERON:0000019!4.21e-07!19;UBERON:0000047!4.21e-07!19;UBERON:0004088!4.21e-07!19;UBERON:0003072!4.21e-07!19;UBERON:0003071!4.21e-07!19;UBERON:0004128!4.21e-07!19;UBERON:0007625!5.90e-07!11;UBERON:0001456!7.38e-07!21;UBERON:0003076!8.05e-07!15;UBERON:0003057!8.05e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001032;4.38e-09;24!UBERON:0004456;4.38e-09;24!UBERON:0001017;6.18e-09;75!UBERON:0000020;8.58e-09;23!UBERON:0000955;1.03e-08;68!UBERON:0000073;1.20e-08;53!UBERON:0002616;1.20e-08;53!UBERON:0002104;1.58e-08;21!UBERON:0006555;2.32e-08;15!UBERON:0004819;2.32e-08;15!UBERON:0001285;2.32e-08;15!UBERON:0007684;2.32e-08;15!UBERON:0000970;3.09e-08;20!UBERON:0001016;7.29e-08;83!UBERON:0000019;1.04e-07;19!UBERON:0000047;1.04e-07;19!UBERON:0004088;1.04e-07;19!UBERON:0010230;1.04e-07;19!UBERON:0002780;1.18e-07;41!UBERON:0001890;1.18e-07;41!UBERON:0000922;1.73e-07;49!UBERON:0007625;1.74e-07;11!UBERON:0001456;2.15e-07;21!UBERON:0000353;2.87e-07;15!UBERON:0003528;2.97e-07;34!UBERON:0002020;2.97e-07;34!UBERON:0002791;3.93e-07;32!UBERON:0001893;3.97e-07;34!UBERON:0001869;4.15e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.72e-27,309;UBERON:0000483,2.05e-26,306;UBERON:0011216,8.62e-26,223;UBERON:0004121,2.78e-24,171;UBERON:0000924,2.78e-24,171;UBERON:0006601,2.78e-24,171;UBERON:0004111,6.49e-24,240;UBERON:0001017,1.76e-23,81;UBERON:0003075,2.60e-23,82;UBERON:0007284,2.60e-23,82;UBERON:0002346,6.40e-23,86;UBERON:0001016,1.28e-22,89;UBERON:0000922,7.47e-22,592;UBERON:0000025,1.46e-21,192;UBERON:0010371,2.35e-20,104;UBERON:0005423,1.55e-18,581;UBERON:0000955,1.64e-18,68;UBERON:0006238,1.64e-18,68;UBERON:0010314,7.32e-18,132;UBERON:0003056,1.48e-16,61;UBERON:0002050,1.86e-16,564;UBERON:0001049,1.53e-15,56;UBERON:0005068,1.53e-15,56;UBERON:0006241,1.53e-15,56;UBERON:0007135,1.53e-15,56;UBERON:0000923,2.83e-15,560;UBERON:0010316,2.83e-15,560;UBERON:0005291,2.83e-15,560;UBERON:0006598,2.83e-15,560;UBERON:0010317,2.83e-15,560;UBERON:0002532,2.83e-15,560;UBERON:0000073,1.19e-14,53;UBERON:0002616,1.19e-14,53;UBERON:0001048,2.60e-11,160;UBERON:0007023,4.90e-11,114;UBERON:0003104,3.23e-10,160;UBERON:0009142,3.23e-10,160;UBERON:0002780,5.50e-10,41;UBERON:0001890,5.50e-10,41;UBERON:0003080,5.50e-10,41;UBERON:0006240,5.50e-10,41;UBERON:0003103,3.65e-09,68;UBERON:0000020,3.94e-09,24;UBERON:0001032,3.94e-09,24;UBERON:0004456,3.94e-09,24;UBERON:0005177,1.03e-08,101;UBERON:0006555,1.24e-08,16;UBERON:0004819,1.24e-08,16;UBERON:0000970,1.52e-08,21;UBERON:0002104,1.52e-08,21;UBERON:0003914,2.01e-08,117;UBERON:0004211,2.80e-08,15;UBERON:0009773,2.80e-08,15;UBERON:0001231,2.80e-08,15;UBERON:0001285,2.80e-08,15;UBERON:0007684,2.80e-08,15;UBERON:0004208,2.80e-08,15;UBERON:0003528,3.53e-08,34;UBERON:0002020,3.53e-08,34;UBERON:0005256,3.71e-08,122;UBERON:0001893,4.16e-08,34;UBERON:0000019,5.12e-08,20;UBERON:0000047,5.12e-08,20;UBERON:0010312,5.12e-08,20;UBERON:0004088,5.12e-08,20;UBERON:0010230,5.12e-08,20;UBERON:0003072,5.12e-08,20;UBERON:0004128,5.12e-08,20;UBERON:0003071,5.12e-08,20;UBERON:0001456,9.64e-08,22;UBERON:0001869,1.26e-07,32;UBERON:0002791,1.32e-07,32;UBERON:0007625,1.76e-07,11;UBERON:0000353,3.36e-07,15;UBERON:0003076,3.46e-07,15;UBERON:0003057,3.46e-07,15;UBERON:0005172,4.53e-07,54;UBERON:0005173,4.53e-07,54;UBERON:0000033,7.99e-07,56 | |||
|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0.872338524100369,7.59899634504932,0,0,11.7952289520724,33.4944560626765,5.24259293112413,7.91300934685361,8.41611200128317,6.2965501388304,3.36162573225888,3.01347264011988,5.84248072309899,2.43966399395253,161.165465022515,123.216417511529,348.248195562156,139.969397707087,47.4954255002908,33.5198847718124,0,0,0,0,0,0.77408061658038,14.7107395916628,7.8313538882345,8.13458822366933,0.0774672005803016,0,0,0,0,0,0.895661896959697,2.91504299417082,1.03030227053675,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8187552945358,123.408958185469,25.4446498068625,0,0,0,0,0.486634870302636,262.617722081781,332.372366796383,304.259697640989,10.936752804059,9.4716774956061,6.3033355273353,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0.275118041940067,0,1.55050055501597,0,4.01664735317604,4.83395180530976,7.60272105718513,6.10155143870424,0.367663080345869,0,2.05389375053383,2.02076435363553,1.35133776579987,0,0,1.09921046358244,0,0,16.5715739814163,0.496971951695318,5.82500353657067,1.05927344650575,8.3182620017156,15.6054088167277,10.0921968025615,14.9448594021587,7.4000264525148,3.11211035399766,2.15537075311501,2.61539044981534,47.9803045634433,49.5511295052799,7.49828581868149,0,0,0,0.469737994575059,0.647491777472526,0.280901613404497,0,3.19369225010597,0.413303124703062,0,0.494533858557114,0,2.87447256726495,1.34668891163253,1.62654075833553,0,7.90159717585508,0,0.45071417671979,4.99101605904093,0.538168907066586,1.2813443329114,0.211931901159562,0,0.103052529238439,0.257640540045629,0.37223371266318,0,0,0,0.184099797284599,0.80823028409406,0,1.0075209822764,0.67824236924195,23.5778240859222,12.0008293059967,15.2006435556172,16.588424033625,18.024048491722,33.2314676606823,45.7145252617784,18.4194221139209,12.0442528495024,0,1.92972281457866,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,70.1247681893416,14.0241773803446,62.5592497223728,133.777927360843,0,5.89696330006576,80.347427308671,0,1.22988438543114,114.092593848519,8.23127140564692,5.62008766288098,1.20634766893957,16.5733316833768,6.51616610620649,0,216.49701303791,264.089462533225,175.408589188318,25.2641283581879,20.3713625533709,44.519471622896,0.790204397959275,0,0.246217006087397,0,0.297262324577456,9.3733833986777,9.07103492273841,12.6179836545724,0.179117045405697,1.45316969256981,3.83382679165211,0,0,0,0,0,0.063497894292169,0,0,3.4214489204541,0.102827492703324,0,0,10.5403219284639,257.216440611635,7.4805051537369,5.55868377758444,0,0.845302752556,22.0728636765443,9.36066932202295,0.771622122786426,1.41849132023278,0.266422179016099,66.1988110637223,53.7195389337529,13.1718453884923,0,66.1029024661135,7.91951872933429,1.20575750823834,5.22920075160176,3.99891964728228,0,1.50677127429638,0,0,0,4.27910715122155,0.144781306667579,2.67119219315498,0.537182889719687,0,0,0,0,9.65559572045361,23.4251736943719,44.0774623283286,90.291267015214,47.2074676223341,0,0,0,7.36148950314839,20.0068208423871,7.32415563989286,1.66376689224646,0.178428988797162,0,0.234282829985426,2.70851489754947,6.82222512167955,1.03473071292505,3.32112799267718,15.3026409889614,0.0868836144680828,29.5659747768738,54.9029478097369,0,0,0,1.21251028578504,4.99306318531491,6.04780586659361,0,0,0.561320188866147,0.256278298511402,0,0.64341568457443,0,0.308419387605311,1.24293207719189,0.164254312027618,9.8658341544888,0.116210378459959,0.846016147141356,14.6369723321398,7.09023614806402,14.3518060205758,5.28064387219479,17.1772983596846,58.6559496779635,45.9011409142312,60.3949322266179,74.531004573163,54.9923986531882,30.7080136991421,3.06168669497728,15.3300300432519,47.8104483339897,116.777914581401,368.741983783317,4.07802036872061,9.14183609821597,60.222309020266,0,0,136.687916687035,110.212920955101,58.5681110395745,10.5101831880677,0,0.082509499920588,8.03971753194641,9.75090369054782,0,50.6554563850719,4.31336127921004,4.75861391651002,5.92697261683481,3.43744783578476,9.28106841051063,4.09087811597284,98.2023353183513,3.8015530533025,4.99694175149276,0.893288987462089,3.13589120652205,33.9337250987019,6.2962469366128,5.5762981612848,0,1.06461206063404,5.21959795245044,2.40921484835096,3.57812216854978,11.5369094501497,8.5422444674056,5.90953601163857,1.535386747868,8.55877976067841,5.40945521474092,4.70969184119538,8.63387796399911,14.0013885165388,8.36468056654374,0.202182481573316,0,0.842516912477962,10.2403085208814,1.94970791705028,9.50851320810799,9.82799362137497,24.604545159946,30.5121914874656,9.37321084028411,0.66343897524122,0.438450885253763,1.15755106853338,5.9030527684197,0.405820753925408,8.0554109505935,2.53526042279017,3.29846110069318,3.7334635584986,0,7.09522128141196,0.211107635297664,0.329294892959902,1.51789269506286,16.0969971312692,14.0484284579248,5.3624182042863,23.956016669491,10.5441056869993,3.44404298136984,0,4.43430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,10.8201909732334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.606802608747567,0.557216921387392,5.68272293612826,0.47748896947538,4.75143489332222,0.307160702099232,2.98244294329889,3.23539657744179,0.667852230137435,0,11.4007720389116,11.556383318562,4.14425873296722,0,95.3144120920083,0.123084805461069,0,4.13394415277704,0,0,9.37112353550869,0,0,26.1719841445709,8.72020122721402,37.9266216202269,0.260427761085233,0,2.17499872630438,11.151757931979,0.254253650292766,0,6.89486746482929,0,3.12524990879926,6.20018970069687,6.99459344027366,9.15490417902499,7.85112745511695,18.6194999940735,18.8671441552416,0,0,4.00141344219745,3.76008784295104,0,0,0.434589487688032,25.8390939382855,16.2127740321296,7.99552164027952,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.848118428603645,0,0,4.24596309616028,11.6095727537389,0,0,0,16.6480798462272,17.6567082405734,17.5698334294004,0,4.10895699757388,0,5.12959723704208,33.8774004936259,26.9344030234831,3.79119477770928,0,0,7.97584647248622,0.330991955875499,1.88359751044335,7.16834578637753,7.39984819677461,0,0.347119476670262,30.4756355958714,2.87295381715328,16.2495801465088,37.3209690463408,0,0,0,2.61870344518732,0,40.2245718589348,0,0.19871461170299,8.35702506617599,3.71547627196126,12.0238230377301,52.9363426953594,30.9704894852302,0,0,92.4897038475989,0,1.11827282008889,6.36373893465348,2.58217991539867,2.09205692624666,0,29.7619107598564,20.4142898161328,8.48813349130357,0,1.28929632425987,0.262887354279314,8.09918963689537,11.2288607765725,2.15361907373044,2.39614800598789,6.00916467391199,3.79391477651183,9.87597045554876,0.360299883542404,0,3.15132729228895,4.45045635258299,4.04421263125109,11.4175878557109,0,7.15706720828373,7.21878052391351,31.1861108022137,14.3041014061123,18.6948152113133,0,0,5.22446187259012,0,4.01909107225911,33.5184818182638,0,0,9.40384466865282,7.14695326373367,1.98627591109629,0,0,0,0.979762080328227,0,0,0.170388021785422,13.2575147078547,15.6810890035548,60.9531688996218,16.0310865888323,10.3141429359298,0.342173675768659,1.40963004463334,2.34932307648928,20.4365596629566,6.62782488555513,6.45015828355536,0,0,30.0020391151985,1.08803560673895,0.7520696820681,0.919036730290385,0.655745261419609,198.987539949047,2.65820453990096,5.36915565568638,4.88244629755349,73.3963770483291,30.8382763272449,17.9458604500598,6.77908311187531,26.6208268959287,0.909894705249887,0,28.9376958228751,0.468334905806882,47.9688604701831,0.597019211547496,6.07654605602784,0.554805861502613,0.189403005275089,1.25783950876288,1.77962244319307,3.66144109435078,3.17584939902802,6.52836242447678,2.95710299979268,10.3542898656407,4.04822800947244,56.6709792598347,19.4911917685202,10.1019851532038,32.3481938323275,4.80824348791099,3.04644169735036,6.50993173127459,7.45579502730494,33.8343254683839,7.4245401580559,46.5772189777381,2.00013882331577,1.03018711554838,0.673498977531838,3.78554694685953,10.9793303332163,0.643324774124777,0.782982875895635,1.13352962756136,1.62065732026684,2.69210374957114,0,2.47041157728778,8.55207793356958,0,0,0,0,0,0.911579868532147,3.594719339945,0,0,0,2.94848863961771,67.8333228160265,0,0,0,0.172214979660816,0.567515953566836,0,13.1486737256278,17.4181632809232,14.8357470712236,0,43.7199318359392,2.51182167841632,0.169732529954025,0.850299680406731,29.9924549506785,5.02780426175919,4.45206090914786,0,4.80342448971282,4.58478726797889,0.918736432059601,12.0108650930379,7.08482881627925,2.71377560397157,8.40977093387096,31.7610337239365,9.6820153449905,6.62050147090589,12.8492478233239,0,0.353909170043221,75.3891539924101,42.6289708094748,0,0,0,116.500798612999,2.42046082444224,88.3110832693394,0,0,87.5308030404908,7.76682223111538,4.68646859168308,3.10030194751776,7.92697627423835,61.2611786100406,1.64477330057155,1.98484471355718,33.2396651839683,54.299031746828,14.999651404592,8.07080933325178,14.5671745016792,16.3916777772934,22.1755925406597,0.115233987555779,0.857440047187092,6.66103383172951,9.40550661948742,0.354581522651905,0,16.2480702200564,9.42693539496011,0,58.4421581126077,0,0,156.462155202701,15.4853339498072,0,33.0330717374901,16.8359386593353,2.07216164163037,1.0243108625637,2.76503864725637,2.58136415292167,0,0,6.77419280305486,16.9539082722597,0.93061915699296,1.91107787795487,0.671132590786754,0,1.09726132484042,1.29485767437579,0.923965261706223,19.7168453327494,11.1713528403602,0,121.956825173919,1.30812099855325,449.073622186905,71.9010979515106,0,5.17066859323229,35.1880892411371,1.41095188908457,13.2380093747109,0.471353094203252,10.600657224207,7.12911360785006,37.1937040273392,0,6.01497075071063,20.6265241515447,0,31.6040471332014,0,0,19.719082482656,4.12856355064087,7.31031874072402,9.46629373159108,11.5585533324555,29.6718469431457,39.677013038655,0,0,0,0.378499274505237,2.84090487105608,2.02717601618299,42.5293420024064,27.7906101476183,17.4600309116205,8.52405633594075,11.1394686380812,19.0254532410887,9.95003327350535,7.24030971033267,2.98527574661373,16.9025746339256,1.42095601639213,1.48979314310059,1.00918676322552,1.52753179867596,5.05292972395548,1.52401723527873,14.7160319466671,1.88585748440845,2.00822175099494,10.6451314094724,163.946182982503,0,15.4457825829552,46.1701538827857,25.81050366438,31.1715682666309,38.2482407616794,11.9836219353392,7.648404156459,0.641136984606466 | |||
|short_description=p1@RBP1 | |||
}} |
Revision as of 21:38, 21 January 2014
Short description: | p1@RBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBP1_5end |
Coexpression cluster: | C1921_small_Renal_Ciliary_Astrocyte_Lens_Meningeal_maxillary |
Association with transcript: | 185bp_to_uc010huj.2_5end |
EntrezGene: | RBP1 |
HGNC: | 9919 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.35e-11 | 250 |
epithelial cell of nephron | 2.80e-08 | 15 |
neural cell | 1.10e-07 | 25 |
ectodermal cell | 1.41e-07 | 72 |