FFCP PHASE1:Hg19::chr3:25470062..25470084,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5915 | |EntrezGene=5915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9865 | |HGNC=9865 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-107bp_to_ENST00000489694_5end | |association_with_transcript=-107bp_to_ENST00000489694_5end | ||
|cluster_id=chr3:25470062..25470084,+ | |||
|description=CAGE_peak_4_at_RARB_5end | |description=CAGE_peak_4_at_RARB_5end | ||
|id=chr3:25470062..25470084,+ | |id=chr3:25470062..25470084,+ | ||
|ontology_enrichment_celltype=CL:0000222!6.30e-17!119;CL:0000187!8.94e-16!54;CL:0000183!1.01e-15!59;CL:0000680!4.29e-14!57;CL:0000056!4.29e-14!57;CL:0000355!4.29e-14!57;CL:0000393!2.70e-13!60;CL:0000211!2.70e-13!60;CL:0000359!2.06e-11!32;CL:0000192!4.30e-11!42;CL:0000514!4.30e-11!42;CL:0000220!1.10e-10!246;CL:0002321!2.43e-10!248;CL:0000055!7.49e-07!180 | |ontology_enrichment_celltype=CL:0000222!6.30e-17!119;CL:0000187!8.94e-16!54;CL:0000183!1.01e-15!59;CL:0000680!4.29e-14!57;CL:0000056!4.29e-14!57;CL:0000355!4.29e-14!57;CL:0000393!2.70e-13!60;CL:0000211!2.70e-13!60;CL:0000359!2.06e-11!32;CL:0000192!4.30e-11!42;CL:0000514!4.30e-11!42;CL:0000220!1.10e-10!246;CL:0002321!2.43e-10!248;CL:0000055!7.49e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000071;1.06e-09;18!CL:0000359;1.58e-09;32!CL:0000064;3.92e-07;3!CL:0000067;3.92e-07;3!CL:0005012;3.92e-07;3!CL:0002304;3.92e-07;3!CL:0002543;5.19e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.13e-14,121;CL:0000187,1.37e-10,55;CL:0000071,7.12e-10,18;CL:0002546,7.12e-10,18;CL:0000359,7.30e-10,32;CL:0000680,9.89e-10,58;CL:0000056,9.89e-10,58;CL:0000355,9.89e-10,58;CL:0002321,2.57e-09,250;CL:0000393,5.80e-09,61;CL:0000211,5.80e-09,61;CL:0000192,2.25e-07,43;CL:0000514,2.25e-07,43;CL:0002543,2.37e-07,6;CL:0000064,4.05e-07,3;CL:0000067,4.05e-07,3;CL:0005012,4.05e-07,3;CL:0002304,4.05e-07,3;CL:0000213,5.68e-07,58;CL:0000215,5.68e-07,58;CL:0002139,8.94e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.06e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.00e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.92e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000119!7.53e-23!312;UBERON:0000483!2.44e-21!309;UBERON:0002049!1.45e-17!79;UBERON:0007798!1.45e-17!79;UBERON:0000481!3.88e-17!347;UBERON:0000477!1.08e-16!286;UBERON:0000490!2.21e-16!138;UBERON:0004872!1.08e-15!84;UBERON:0001981!1.59e-14!60;UBERON:0007500!1.59e-14!60;UBERON:0004537!1.59e-14!60;UBERON:0006965!1.59e-14!60;UBERON:0001637!2.05e-14!42;UBERON:0003509!2.05e-14!42;UBERON:0004572!2.05e-14!42;UBERON:0001009!5.09e-14!113;UBERON:0000025!5.54e-14!194;UBERON:0004535!7.54e-14!110;UBERON:0002385!9.00e-14!63;UBERON:0001015!9.00e-14!63;UBERON:0000383!9.00e-14!63;UBERON:0003914!9.50e-14!118;UBERON:0004111!1.68e-13!241;UBERON:0004290!3.19e-13!70;UBERON:0001134!3.81e-13!61;UBERON:0002036!3.81e-13!61;UBERON:0003082!3.81e-13!61;UBERON:0004573!9.07e-13!33;UBERON:0004571!9.07e-13!33;UBERON:0000055!9.24e-13!69;UBERON:0000914!3.91e-12!83;UBERON:0002329!3.91e-12!83;UBERON:0003077!3.91e-12!83;UBERON:0003059!3.91e-12!83;UBERON:0007282!3.91e-12!83;UBERON:0009618!3.91e-12!83;UBERON:0007285!3.91e-12!83;UBERON:0005256!4.45e-11!143;UBERON:0000486!7.61e-11!82;UBERON:0000475!1.02e-10!365;UBERON:0002100!1.19e-09!216;UBERON:0003104!4.19e-09!238;UBERON:0009142!4.19e-09!238;UBERON:0007625!8.82e-09!11;UBERON:0000922!5.44e-08!612;UBERON:0002050!7.87e-08!605;UBERON:0005423!7.87e-08!605;UBERON:0000923!1.39e-07!604;UBERON:0005291!1.39e-07!604;UBERON:0006598!1.39e-07!604;UBERON:0002532!1.39e-07!604;UBERON:0000467!5.83e-07!625;UBERON:0000947!6.45e-07!21;UBERON:0010191!6.45e-07!21;UBERON:0000480!7.40e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.93e-17;11!UBERON:0000970;1.23e-13;20!UBERON:0004573;4.24e-13;33!UBERON:0004571;4.24e-13;33!UBERON:0002104;8.16e-13;21!UBERON:0000019;1.66e-12;19!UBERON:0000047;1.66e-12;19!UBERON:0004088;1.66e-12;19!UBERON:0010230;1.66e-12;19!UBERON:0000020;2.17e-11;23!UBERON:0000490;5.08e-11;33!UBERON:0001456;5.28e-11;21!UBERON:0000487;8.57e-11;22!UBERON:0001032;9.09e-11;24!UBERON:0004456;9.09e-11;24!UBERON:0006914;1.33e-10;25!UBERON:0001637;2.65e-10;42!UBERON:0003509;2.65e-10;42!UBERON:0004572;2.65e-10;42!UBERON:0004638;1.06e-09;18!UBERON:0001986;1.06e-09;18!UBERON:0004852;1.06e-09;18!UBERON:0000488;4.55e-09;4!UBERON:0002049;6.84e-09;75!UBERON:0007798;6.84e-09;75!UBERON:0010371;1.23e-08;31!UBERON:0002203;1.91e-08;6!UBERON:0001768;1.91e-08;6!UBERON:0002200;1.91e-08;6!UBERON:0001801;3.97e-08;14!UBERON:0001778;3.92e-07;3!UBERON:0001775;3.92e-07;3!UBERON:0007500;5.38e-07;56!UBERON:0001981;5.38e-07;56!UBERON:0004537;5.38e-07;56!UBERON:0000119;8.17e-07;139 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.58e-17,11;UBERON:0000490,1.88e-15,148;UBERON:0002049,1.94e-15,78;UBERON:0007798,1.94e-15,78;UBERON:0007500,4.74e-14,59;UBERON:0001981,4.74e-14,59;UBERON:0004537,4.74e-14,59;UBERON:0006965,4.74e-14,59;UBERON:0004573,5.47e-14,33;UBERON:0004571,5.47e-14,33;UBERON:0000970,5.63e-13,21;UBERON:0002104,5.63e-13,21;UBERON:0001637,1.05e-12,42;UBERON:0003509,1.05e-12,42;UBERON:0004572,1.05e-12,42;UBERON:0000119,3.49e-12,309;UBERON:0000019,8.22e-12,20;UBERON:0000047,8.22e-12,20;UBERON:0010312,8.22e-12,20;UBERON:0004088,8.22e-12,20;UBERON:0010230,8.22e-12,20;UBERON:0003072,8.22e-12,20;UBERON:0004128,8.22e-12,20;UBERON:0003071,8.22e-12,20;UBERON:0004872,2.16e-11,83;UBERON:0000055,3.22e-11,68;UBERON:0000487,4.63e-11,22;UBERON:0000020,6.62e-11,24;UBERON:0001032,6.62e-11,24;UBERON:0004456,6.62e-11,24;UBERON:0004535,6.68e-11,109;UBERON:0006914,6.93e-11,25;UBERON:0000483,1.31e-10,306;UBERON:0002329,1.67e-10,71;UBERON:0003059,1.67e-10,71;UBERON:0007282,1.67e-10,71;UBERON:0004290,1.67e-10,71;UBERON:0009618,1.67e-10,71;UBERON:0005085,1.79e-10,31;UBERON:0001456,1.92e-10,22;UBERON:0001009,2.32e-10,112;UBERON:0003077,2.93e-10,72;UBERON:0007285,2.93e-10,72;UBERON:0007524,5.06e-10,73;UBERON:0004638,7.12e-10,18;UBERON:0001986,7.12e-10,18;UBERON:0004852,7.12e-10,18;UBERON:0007503,9.25e-10,78;UBERON:0001134,1.07e-09,62;UBERON:0002036,1.07e-09,62;UBERON:0003082,1.07e-09,62;UBERON:0000486,1.34e-09,83;UBERON:0002385,3.34e-09,64;UBERON:0001015,3.34e-09,64;UBERON:0000383,3.34e-09,64;UBERON:0000488,4.71e-09,4;UBERON:0002203,2.67e-08,6;UBERON:0001768,2.67e-08,6;UBERON:0002200,2.67e-08,6;UBERON:0001801,4.33e-08,14;UBERON:0003914,6.16e-08,117;UBERON:0003104,9.96e-08,160;UBERON:0009142,9.96e-08,160;UBERON:0001778,4.05e-07,3;UBERON:0001775,4.05e-07,3 | |||
|phase1_expression=0.181678379270557,0,0,0,0,1.74467704820074,0,0,0,1.72013755551056,0.697801167972428,0,0,1.60896258848061,0.662794751455832,1.34465029290355,1.20538905604795,0.730310090387373,0,0.61560529038394,0.408001382488506,0,0.85870796139317,0.821246550437305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.383587685530591,0,0,0,0.795285947051099,0,4.34860158954712,5.76496433402666,5.00658278450818,0.327447688744282,0,0,0,0,0,0,0,0,0.198762407366705,2.58070378531837,0.347140501607594,1.13061588384802,2.09749718104953,3.02629846134074,0.417989933073621,0.516833518338658,0.71153252537342,0.66944122552934,0,1.52054421143703,0,0,4.0507097394088,2.41109266367015,1.57170560838319,1.46394924628319,0,2.84779697870439,1.64881569537367,0,0,0,0,1.01304409331664,0.926864265692532,0,0.709336764396714,0.560677600142307,2.1349799145941,0.49333509683432,0,0.269421344139376,0.490385709340376,0.908144565869588,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0.751190294532984,0.680593098960126,0.179389635688862,0.427114777637135,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,3.12899064659632,1.92972281457866,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,9.95093299731448,0,0,0,0,0,0,7.21656710126366,2.89826012437692,7.51415643109259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571481048629521,0.763976851116555,0,3.4214489204541,0.514137463516618,0,0.857479297891735,1.00917975910825,8.28324130783232,3.15354629030085,0.258543431515556,0,1.690605505112,0.531876233169741,0,0.257207374262142,0,0.532844358032199,0.285955987316295,0,0,0,0,0,6.63166629531089,0,2.0994328148232,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,5.15304265220388,1.00034104211935,0.542530047399471,0.415941723061614,0.535286966391485,0.157702415033935,0.585707074963566,0,0,0,0.664225598535437,0.184369168541703,0,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,0.120859449591622,0.40101294060657,0,1.03333003348146,0.546273504020151,2.88473712910733,0,0.0770153371044148,0,0,0.527758144464379,1.13733384070897,0.680374821106063,0.863663664408557,0,0,0.501689773854853,0,0,0,0,0,5.38545262744417,2.29610251989794,1.95227036798582,1.54561517471583,0.366277859273374,0.247528499761764,0,0,0,0.48335359146061,2.15668063960502,2.14905144616581,0.827019434907183,1.82614416276065,2.90033387828457,0.340906509664404,0.712256285173899,0,0,0,0,0.464845549297286,0.62962469366128,2.0911118104818,3.69640296211307,1.06461206063404,0.869932992075073,1.11194531462352,2.14687330112987,1.48863347743867,0.632758849437452,0.190630193923825,0,0.42793898803392,1.59101623962968,2.35484592059769,0.359744915166629,0,0.235624804691373,1.01091240786658,1.58510321173008,1.26377536871694,0,6.09283724078211,0,0.9554993798559,0.424216295861138,0,0.551365343546124,4.64407282668854,2.19225442626881,0,0.655894752046633,0.405820753925408,0.6196469961995,0,0.430234056612155,0,0.7133421029625,2.12856638442359,1.47775344708365,0,0.379473173765715,1.04980416073495,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,1.45632626099416,0,5.39858678932185,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.20453736500431,0,0,0.359473404589307,4.65455054156584,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0.885741385813839,0.964771509003264,0,0,0,0,0,0,0.461701551022782,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,13.4160956640096,0,0.353830258013357,0,0,0,0,0,1.60515529459758,0,0,0.19566461893209,0,0.789168805698781,0,0.30607276163049,0.442306057399416,0,1.34794648816421,0.664653872707185,0.661983911750998,0,0,0.284609546029793,0,0,0,0,0.34945333648406,0,0,0,0,0.581934098930517,0,1.58186518546373,0.959293472527256,2.18586072873289,0.443175571691151,0,0.561111741760736,0.213452994739353,0,0,0.572682980829578,0,0,1.24252535565433,0,0,0,2.75395187618069,0,0,0,0,0,0,0.558564802544508,0,0,0.199679000498991,0,0.669514372325618,0.53746777989381,0,0,0,0,0,0.590564889088493,0.169346664131569,0,0,0,0,0,0,0,0.242998226632099,0,1.41850273138557,2.09818352539992,0.105600336519406,0.717149357331379,0,0.714695326373367,0,0,0.542999601753713,0.864221491201268,0.653174720218818,0,0,0.681552087141687,3.05942647104339,0.146552233678082,0,0,0,1.02652102730598,0,0.640724475406168,1.25763444079733,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.221858103073705,0.0620964029413835,2.07522952404346,0.37494122388632,6.06596470166591,0,1.41159491818903,0,0,0.149254802886874,0,0,0.189403005275089,0.251567901752575,0,0,0.453692771289717,1.24349760466224,0.147855149989634,3.34523211043775,0,2.018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| ||
|short_description=p4@RARB | |short_description=p4@RARB | ||
}} | }} |
Latest revision as of 20:32, 17 September 2015
Short description: | p4@RARB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RARB_5end |
Coexpression cluster: | NA |
Association with transcript: | -107bp_to_ENST00000489694_5end |
EntrezGene: | RARB |
HGNC: | 9865 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.13e-14 | 121 |
muscle cell | 1.37e-10 | 55 |
blood vessel endothelial cell | 7.12e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.12e-10 | 18 |
vascular associated smooth muscle cell | 7.30e-10 | 32 |
muscle precursor cell | 9.89e-10 | 58 |
myoblast | 9.89e-10 | 58 |
multi-potent skeletal muscle stem cell | 9.89e-10 | 58 |
embryonic cell | 2.57e-09 | 250 |
electrically responsive cell | 5.80e-09 | 61 |
electrically active cell | 5.80e-09 | 61 |
smooth muscle cell | 2.25e-07 | 43 |
smooth muscle myoblast | 2.25e-07 | 43 |
vein endothelial cell | 2.37e-07 | 6 |
ciliated cell | 4.05e-07 | 3 |
ciliated epithelial cell | 4.05e-07 | 3 |
multi-ciliated epithelial cell | 4.05e-07 | 3 |
non-pigmented ciliary epithelial cell | 4.05e-07 | 3 |
lining cell | 5.68e-07 | 58 |
barrier cell | 5.68e-07 | 58 |
endothelial cell of vascular tree | 8.94e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.92e-07 | 14 |