Personal tools

Coexpression cluster:C1289

From FANTOM5_SSTAR

Jump to: navigation, search


Full id: C1289_mesenchymal_Smooth_Cardiac_Mesothelial_Sertoli_leiomyoma_Preadipocyte



Phase1 CAGE Peaks

  Short description
Hg19::chr9:6215137..6215161,+ p@chr9:6215137..6215161
+
Hg19::chr9:6215799..6215815,+ p1@IL33
Hg19::chr9:6256728..6256739,+ p@chr9:6256728..6256739
+
Hg19::chr9:6256995..6256999,+ p@chr9:6256995..6256999
+
Hg19::chr9:6257148..6257157,+ p@chr9:6257148..6257157
+
Hg19::chr9:6257179..6257191,+ p@chr9:6257179..6257191
+
Hg19::chr9:6257212..6257223,+ p@chr9:6257212..6257223
+


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


No GOStat results

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data
disease_data


Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm1.34e-3183
heart9.02e-2224
primitive heart tube9.02e-2224
primary heart field9.02e-2224
anterior lateral plate mesoderm9.02e-2224
heart tube9.02e-2224
heart primordium9.02e-2224
cardiac mesoderm9.02e-2224
cardiogenic plate9.02e-2224
heart rudiment9.02e-2224
artery1.52e-2042
arterial blood vessel1.52e-2042
arterial system1.52e-2042
epithelial tube open at both ends3.28e-2059
blood vessel3.28e-2059
blood vasculature3.28e-2059
vascular cord3.28e-2059
muscle tissue5.95e-1964
musculature5.95e-1964
musculature of body5.95e-1964
systemic artery6.11e-1933
systemic arterial system6.11e-1933
primary circulatory organ1.53e-1827
skeletal muscle tissue1.74e-1862
striated muscle tissue1.74e-1862
myotome1.74e-1862
cardiovascular system3.85e-18109
epithelial tube2.66e-17117
circulatory system3.11e-17112
vessel5.42e-1668
paraxial mesoderm2.27e-1572
presumptive paraxial mesoderm2.27e-1572
dense mesenchyme tissue5.30e-1573
somite1.07e-1471
presomitic mesoderm1.07e-1471
presumptive segmental plate1.07e-1471
dermomyotome1.07e-1471
trunk paraxial mesoderm1.07e-1471
anatomical conduit1.57e-14240
vasculature2.34e-1478
vascular system2.34e-1478
anatomical cluster4.05e-14373
mesoderm1.03e-13315
mesoderm-derived structure1.03e-13315
presumptive mesoderm1.03e-13315
tube5.86e-13192
multilaminar epithelium8.57e-1383
reproductive structure9.46e-1359
reproductive system9.46e-1359
epithelial vesicle2.12e-1278
epithelium2.96e-12306
trunk mesenchyme3.95e-12122
multi-tissue structure5.93e-12342
cell layer6.63e-12309
smooth muscle tissue7.36e-1115
embryonic structure1.25e-10564
female gonad1.64e-1013
germ layer1.88e-10560
germ layer / neural crest1.88e-10560
embryonic tissue1.88e-10560
presumptive structure1.88e-10560
germ layer / neural crest derived structure1.88e-10560
epiblast (generic)1.88e-10560
unilaminar epithelium3.06e-10148
mesenchyme4.71e-10160
entire embryonic mesenchyme4.71e-10160
embryo7.78e-10592
developing anatomical structure1.07e-09581
compound organ1.13e-0868
right ovary1.15e-085
reproductive organ1.95e-0848
thoracic segment blood vessel3.20e-085
subclavian artery3.20e-085
gonad5.47e-0821
indifferent external genitalia5.47e-0821
indifferent gonad5.47e-0821
gonad primordium5.47e-0821
anatomical system7.49e-08624
blood vessel smooth muscle7.99e-0810
arterial system smooth muscle7.99e-0810
artery smooth muscle tissue7.99e-0810
aorta smooth muscle tissue7.99e-0810
anatomical group8.77e-08625
adult organism9.08e-08114
heart blood vessel9.49e-085

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.00215847
MA0004.10.502801
MA0006.10.341337
MA0007.10.483857
MA0009.10.973289
MA0014.10.0156227
MA0017.10.380797
MA0019.10.652951
MA0024.10.867125
MA0025.12.50576
MA0027.12.59001
MA0028.10.35747
MA0029.10.886702
MA0030.10.875089
MA0031.10.809638
MA0038.10.60704
MA0040.10.892629
MA0041.10.521615
MA0042.10.48922
MA0043.10.973609
MA0046.10.962263
MA0048.10.120314
MA0050.10.490116
MA0051.10.602745
MA0052.10.896548
MA0055.10.158296
MA0056.10
MA0057.10.115382
MA0058.10.406232
MA0059.10.404929
MA0060.10.224688
MA0061.10.198335
MA0063.10
MA0066.10.607474
MA0067.11.29359
MA0068.10.162298
MA0069.10.958358
MA0070.10.947018
MA0071.11.39306
MA0072.10.942461
MA0073.10.000265001
MA0074.10.60198
MA0076.10.422297
MA0077.10.934645
MA0078.10.703614
MA0081.10.405093
MA0083.10.980893
MA0084.11.48179
MA0087.10.939982
MA0088.10.0723293
MA0089.10
MA0090.10.436918
MA0091.10.505453
MA0092.10.467172
MA0093.10.344385
MA0095.10
MA0098.10
MA0100.10.621149
MA0101.10.347695
MA0103.10.332048
MA0105.10.104569
MA0106.10.648997
MA0107.10.274127
MA0108.20.806528
MA0109.10
MA0111.10.45062
MA0113.10.665691
MA0114.10.269076
MA0115.11.21667
MA0116.10.277571
MA0117.11.01134
MA0119.10.388712
MA0122.11.03753
MA0124.11.17486
MA0125.11.0901
MA0130.10
MA0131.10.722072
MA0132.10
MA0133.10
MA0135.11.00402
MA0136.10.614215
MA0139.10.186511
MA0140.10.564957
MA0141.11.83545
MA0142.10.777365
MA0143.10.66587
MA0144.10.708913
MA0145.10.0807715
MA0146.10.0127148
MA0147.10.768766
MA0148.10.528066
MA0149.10.555119
MA0062.20.193221
MA0035.20.564239
MA0039.20.00276064
MA0138.20.704862
MA0002.20.213296
MA0137.20.36398
MA0104.20.636673
MA0047.20.636643
MA0112.20.0758925
MA0065.20.282161
MA0150.11.92997
MA0151.10
MA0152.10.571637
MA0153.11.07307
MA0154.10.335384
MA0155.10.071478
MA0156.10.36627
MA0157.10.749547
MA0158.10
MA0159.10.281681
MA0160.11.34201
MA0161.10
MA0162.10.0249953
MA0163.10.0167306
MA0164.10.678332
MA0080.21.63199
MA0018.20.650405
MA0099.21.40221
MA0079.29.15802e-07
MA0102.21.51913
MA0258.10.245543
MA0259.10.289405
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data


This analysis result is provided for C0 - C305 clusters.