FFCP PHASE1:Hg19::chr3:147110055..147110129,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20393 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=48bp_to_ENST00000472749_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_1_at_ZIC4_5end | |||
|id=chr3:147110055..147110129,- | |||
|ontology_enrichment_celltype=CL:0002620!5.45e-12!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.16e-10;23!CL:0000064;1.94e-07;3!CL:0000067;1.94e-07;3!CL:0005012;1.94e-07;3!CL:0002304;1.94e-07;3!CL:0002564;2.86e-07;3!CL:0002559;3.49e-07;5!CL:0000346;8.67e-07;3!CL:1000428;8.67e-07;3!CL:0002603;8.67e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.81e-10,23;CL:0000064,1.49e-07,3;CL:0000067,1.49e-07,3;CL:0005012,1.49e-07,3;CL:0002304,1.49e-07,3;CL:0002559,2.24e-07,5;CL:0002564,3.39e-07,3;CL:0000346,4.70e-07,3;CL:1000428,4.70e-07,3;CL:0002603,4.70e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.99e-09;82!UBERON:0006215;8.87e-09;3!UBERON:0006241;1.12e-07;3!UBERON:0003057;1.12e-07;3 | |||
|ontology_enrichment_disease=DOID:17!3.07e-07!5;DOID:450!3.07e-07!5;DOID:66!3.07e-07!5;DOID:423!3.07e-07!5;DOID:0080000!3.07e-07!5;DOID:11722!3.07e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;7.51e-12;5!DOID:450;7.51e-12;5!DOID:66;7.51e-12;5!DOID:423;7.51e-12;5!DOID:0080000;7.51e-12;5!DOID:11722;7.51e-12;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.50e-11,5;DOID:450,1.50e-11,5;DOID:66,1.50e-11,5;DOID:423,1.50e-11,5;DOID:0080000,1.50e-11,5;DOID:11722,1.50e-11,5 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.24e-42!94;UBERON:0001016!3.24e-42!94;UBERON:0001017!4.03e-41!82;UBERON:0001049!1.15e-40!57;UBERON:0005068!1.15e-40!57;UBERON:0006241!1.15e-40!57;UBERON:0007135!1.15e-40!57;UBERON:0005743!5.65e-40!86;UBERON:0000955!4.64e-39!69;UBERON:0006238!4.64e-39!69;UBERON:0002616!4.54e-38!59;UBERON:0003075!2.99e-35!86;UBERON:0007284!2.99e-35!86;UBERON:0002346!3.24e-34!90;UBERON:0004121!5.70e-25!169;UBERON:0002780!6.04e-25!41;UBERON:0001890!6.04e-25!41;UBERON:0006240!6.04e-25!41;UBERON:0000924!9.59e-25!173;UBERON:0006601!9.59e-25!173;UBERON:0003080!4.37e-24!42;UBERON:0000033!1.08e-22!123;UBERON:0003056!3.17e-22!61;UBERON:0001893!1.93e-21!34;UBERON:0002020!4.66e-21!34;UBERON:0003528!4.66e-21!34;UBERON:0000153!1.03e-20!129;UBERON:0007811!1.03e-20!129;UBERON:0002791!1.56e-20!33;UBERON:0007023!1.13e-19!115;UBERON:0001869!2.32e-19!32;UBERON:0003076!1.04e-18!15;UBERON:0003057!1.04e-18!15;UBERON:0004732!1.95e-16!13;UBERON:0000475!2.26e-15!365;UBERON:0004733!3.15e-15!12;UBERON:0002028!3.15e-15!12;UBERON:0007277!3.15e-15!12;UBERON:0000956!5.07e-14!25;UBERON:0000203!5.07e-14!25;UBERON:0002619!6.40e-12!22;UBERON:0002680!1.03e-11!9;UBERON:0001895!1.03e-11!9;UBERON:0010092!1.03e-11!9;UBERON:0002097!2.70e-10!40;UBERON:0001950!3.94e-10!20;UBERON:0000119!2.96e-09!312;UBERON:0002308!9.06e-09!9;UBERON:0000125!9.06e-09!9;UBERON:0000483!9.75e-09!309;UBERON:0002037!1.08e-08!6;UBERON:0006215!1.08e-08!6;UBERON:0002199!2.10e-08!45;UBERON:0002416!2.10e-08!45;UBERON:0002298!9.49e-08!8;UBERON:0005174!3.49e-07!5;UBERON:0001137!3.49e-07!5;UBERON:0009663!4.95e-07!7;UBERON:0002420!8.47e-07!9;UBERON:0007245!8.47e-07!9;UBERON:0010009!8.47e-07!9;UBERON:0010011!8.47e-07!9;UBERON:0000454!8.47e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;6.27e-24;13!UBERON:0004733;6.65e-22;12!UBERON:0002028;6.65e-22;12!UBERON:0000073;9.13e-21;53!UBERON:0002616;9.13e-21;53!UBERON:0001017;9.36e-19;75!UBERON:0002680;1.10e-15;9!UBERON:0001895;1.10e-15;9!UBERON:0001016;8.69e-15;83!UBERON:0000955;1.07e-14;68!UBERON:0002780;1.58e-14;41!UBERON:0001890;1.58e-14;41!UBERON:0002037;8.00e-14;6!UBERON:0001893;6.25e-12;34!UBERON:0000125;1.52e-11;9!UBERON:0002308;1.52e-11;9!UBERON:0009663;1.94e-11;7!UBERON:0011135;5.07e-11;5!UBERON:0002216;5.07e-11;5!UBERON:0011134;5.07e-11;5!UBERON:0002209;5.07e-11;5!UBERON:0002213;5.07e-11;5!UBERON:0007844;5.07e-11;5!UBERON:0011138;5.07e-11;5!UBERON:0001130;5.07e-11;5!UBERON:0001066;5.07e-11;5!UBERON:0001468;5.07e-11;5!UBERON:0002791;1.73e-10;32!UBERON:0001869;3.80e-10;32!UBERON:0003528;4.98e-10;34!UBERON:0002020;4.98e-10;34!UBERON:0002298;6.15e-10;6!UBERON:0004905;1.37e-09;8!UBERON:0000982;1.37e-09;8!UBERON:0004770;1.37e-09;8!UBERON:0000488;3.75e-09;4!UBERON:0002784;4.37e-09;4!UBERON:0002420;1.04e-08;9!UBERON:0007245;1.04e-08;9!UBERON:0010009;1.04e-08;9!UBERON:0010011;1.04e-08;9!UBERON:0000454;1.04e-08;9!UBERON:0011216;2.88e-08;132!UBERON:0002097;4.03e-08;41!UBERON:0001896;5.53e-08;3!UBERON:0005290;5.53e-08;3!UBERON:0001894;6.19e-08;7!UBERON:0002240;1.12e-07;3!UBERON:0005174;1.12e-07;3!UBERON:0001137;1.12e-07;3!UBERON:0001778;1.94e-07;3!UBERON:0001775;1.94e-07;3!UBERON:0002242;2.86e-07;3!UBERON:0002073;3.49e-07;5!UBERON:0002418;4.14e-07;3!UBERON:0004755;4.14e-07;3!UBERON:0007023;5.34e-07;114!UBERON:0000412;8.67e-07;3!UBERON:0001992;8.67e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.04e-44,89;UBERON:0001049,3.62e-42,56;UBERON:0005068,3.62e-42,56;UBERON:0006241,3.62e-42,56;UBERON:0007135,3.62e-42,56;UBERON:0001017,7.47e-41,81;UBERON:0003075,3.92e-39,82;UBERON:0007284,3.92e-39,82;UBERON:0002346,1.27e-38,86;UBERON:0000955,2.64e-38,68;UBERON:0006238,2.64e-38,68;UBERON:0000073,6.88e-37,53;UBERON:0002616,6.88e-37,53;UBERON:0010371,3.65e-35,104;UBERON:0004121,6.19e-30,171;UBERON:0000924,6.19e-30,171;UBERON:0006601,6.19e-30,171;UBERON:0003076,3.35e-28,15;UBERON:0003057,3.35e-28,15;UBERON:0010314,1.98e-27,132;UBERON:0004732,3.30e-24,13;UBERON:0003056,3.28e-22,61;UBERON:0004733,4.26e-22,12;UBERON:0002028,4.26e-22,12;UBERON:0007277,4.26e-22,12;UBERON:0002780,1.08e-19,41;UBERON:0001890,1.08e-19,41;UBERON:0003080,1.08e-19,41;UBERON:0006240,1.08e-19,41;UBERON:0007023,3.51e-17,114;UBERON:0002680,5.73e-16,9;UBERON:0001895,5.73e-16,9;UBERON:0010092,5.73e-16,9;UBERON:0011216,1.06e-14,223;UBERON:0002037,4.27e-14,6;UBERON:0006215,4.27e-14,6;UBERON:0001893,7.63e-14,34;UBERON:0003528,5.76e-12,34;UBERON:0002020,5.76e-12,34;UBERON:0000125,1.10e-11,9;UBERON:0002308,1.10e-11,9;UBERON:0009663,1.47e-11,7;UBERON:0001869,2.91e-11,32;UBERON:0002791,2.96e-11,32;UBERON:0011135,7.11e-11,5;UBERON:0002216,7.11e-11,5;UBERON:0011134,7.11e-11,5;UBERON:0002209,7.11e-11,5;UBERON:0002213,7.11e-11,5;UBERON:0005856,7.11e-11,5;UBERON:0005866,7.11e-11,5;UBERON:0005863,7.11e-11,5;UBERON:0007844,7.11e-11,5;UBERON:0011138,7.11e-11,5;UBERON:0001130,7.11e-11,5;UBERON:0001066,7.11e-11,5;UBERON:0001468,7.11e-11,5;UBERON:0002298,6.91e-10,6;UBERON:0004905,1.61e-09,8;UBERON:0000982,1.61e-09,8;UBERON:0004770,1.61e-09,8;UBERON:0002784,2.67e-09,4;UBERON:0000488,4.61e-09,4;UBERON:0002097,8.18e-09,41;UBERON:0002420,8.39e-09,9;UBERON:0007245,8.39e-09,9;UBERON:0010009,8.39e-09,9;UBERON:0010011,8.39e-09,9;UBERON:0000454,8.39e-09,9;UBERON:0001894,4.04e-08,7;UBERON:0006222,4.04e-08,7;UBERON:0001896,7.21e-08,3;UBERON:0005290,7.21e-08,3;UBERON:0010096,7.21e-08,3;UBERON:0002240,8.66e-08,3;UBERON:0005174,8.66e-08,3;UBERON:0001137,8.66e-08,3;UBERON:0001778,1.49e-07,3;UBERON:0001775,1.49e-07,3;UBERON:0002199,1.80e-07,46;UBERON:0002416,1.80e-07,46;UBERON:0002073,2.24e-07,5;UBERON:0005086,2.24e-07,5;UBERON:0002242,3.39e-07,3;UBERON:0003068,3.39e-07,3;UBERON:0002328,3.39e-07,3;UBERON:0004880,3.39e-07,3;UBERON:0000412,4.70e-07,3;UBERON:0001992,4.70e-07,3;UBERON:0000483,6.95e-07,306;UBERON:0002418,7.37e-07,3;UBERON:0004755,7.37e-07,3 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,2.22779435328084,1.32558950291166,0,0,0,0,1.72369481307503,1.63200552995402,1.25381888591235,1.43117993565528,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,2.45790524626576,2.4390233720882,1.58102614247627,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,1.05950199351452,0,0,0,0,0.298897361103602,0.587172493218824,1.13311061057692,0.842704840213491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07633781413317,3.20336083227851,2.11931901159562,2.40072876867522,3.19462840639161,0.772921620136887,3.53622027030021,0,0.292311015483596,2.52433774244115,3.95814564161887,0,1.06502877754984,2.82105875037393,0,0,0,0,0,0,0,0.310983165046111,0.252320850875628,0,1.56449532329816,1.92972281457866,1.38134921352481,3.25057549622385,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,2.55046890945169,0.469634776943287,0,0,0,1.58040879591855,3.43394464837949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0.7333828582095,0,3.57656445851882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39624855491583,2.29723871668228,0,1.01346914667305,0.821905290201534,1.61154866915906,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,1.59498939234882,3.00102312635806,1.08506009479894,0,0,0,0,0,0,0,0,0,0.434418072340414,2.34961388955289,1.02943027143257,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0.821271560138091,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.742585499285292,0,0,0,0.193341436584244,0.308097234229289,0.460511024178389,0.137836572484531,0,0,0.511359764496605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,1.58189712359363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,1.20598527610407,1.99613798001194,0.260427761085233,0,0,0,0,0,0,0,0,0,5.18564686089254,13.7323562685375,23.3322238454884,23.9393571352373,3.29078095730959,0,0,0,0,0.23056390438806,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.79649743633823,0,3.74823113160543,0,0,0,0,0,0,1.20054501294127,0,0,0,0,0,0,0,0,0,0,0,0,3.26773461696071,0,0,0,0,1.059073520298,1.12990370390266,0,0.19871461170299,1.32952671507345,0.977756913674015,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0.101998217636322,1.73370353940911,1.80126086612937,2.19048606227189,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,3.26888174667781,0,0,0,0,0,0.607495566580247,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,2.04465626142506,0.339936274560377,0.146552233678082,0,1.55139547633861,0.66116300871345,0,0,0,0,0,0.496166021811951,0,0,0,0,1.0027595760908,0,0,0,0.886068179966986,0,1.251909307065,1.14681839138014,5.65738162837947,5.15400144413483,0.276697269872462,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0.428883182749851,0.260994291965212,0,1.85217979459067,0,0,0,0,0,0,0,0,0,0.911579868532147,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0,0,0,2.372145850727,0.157265941855896,0,0,1.06287460050841,0,0,0,0,0.80057074828547,0,0,2.76185667914776,1.41696576325585,1.59633859057151,0.41023272848151,0.252071696221718,0.691572524642179,1.45328081068666,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14813893851271,1.56215619722769,1.44680757550829,1.01465296310251,0,0,0.496211178389294,0,0,1.07140367175657,5.71682327772001,0,0,0,0,0,13.9337952602505,0.789273282754189,0.118193840883968,0,0,2.67096502857203,0,0,0,0,2.00134323694638,0,0.464965701472501,0.347716544605159,0,0,0,0,0,3.0766320189947,3.32332278560715,0,0.22910686854405,0,0,0,0,0,0,0.410651227424988,1.1598144313382,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,1.57046773691956,4.75274240523338,2.5359343655004,0.169927114687817,0.0939839179798536,0,0,0,0,0,0,0,1.14671666521161,0.157771562193185,0.407948941145488,0,0,0.743990036333503,0,0,0.126166424835079,0,0.253397002022874,0,0.26721740526556,0,0,0,0,1.65833887891756,1.86179392551411,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@ZIC4 | |||
}} |
Revision as of 21:50, 21 January 2014
Short description: | p1@ZIC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZIC4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 48bp_to_ENST00000472749_5end |
EntrezGene: | ZIC4 |
HGNC: | 20393 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.81e-10 | 23 |
ciliated cell | 1.49e-07 | 3 |
ciliated epithelial cell | 1.49e-07 | 3 |
multi-ciliated epithelial cell | 1.49e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.49e-07 | 3 |
hair follicle cell | 2.24e-07 | 5 |
nucleus pulposus cell of intervertebral disc | 3.39e-07 | 3 |
hair follicle dermal papilla cell | 4.70e-07 | 3 |
stem cell of epidermis | 4.70e-07 | 3 |
astrocyte of the cerebellum | 4.70e-07 | 3 |
Ontology term | p-value | n |
---|