FFCP PHASE1:Hg19::chr5:87974254..87974270,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:87974254..87974270,- to FFCP PHASE1:Hg19::chr5:87974254..87974270,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=645323 | |EntrezGene=645323 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42810 | |HGNC=42810 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000502301,ENST00000506014,ENST00000513026,NR_024383,uc011cub.1_5end | |||
|cluster_id=chr5:87974254..87974270,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_LINC00461_5end | |||
|id=chr5:87974254..87974270,- | |||
|ontology_enrichment_celltype=CL:0002319!6.37e-17!25;CL:0000128!6.25e-14!7;CL:0000126!6.25e-14!7;CL:0000127!6.25e-14!7;CL:0002453!6.25e-14!7;CL:0000047!1.28e-11!8;CL:0000095!2.33e-08!17;CL:0000123!2.33e-08!17;CL:0000133!4.37e-08!59;CL:0000540!5.32e-08!6;CL:0000031!5.32e-08!6;CL:0000404!5.32e-08!6;CL:0000243!8.81e-08!15;CL:0000125!8.81e-08!15;CL:0000030!8.81e-08!15;CL:0000339!8.81e-08!15;CL:0002605!3.05e-07!3;CL:0002603!5.85e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000128;4.94e-20;7!CL:0000126;4.94e-20;7!CL:0000127;4.94e-20;7!CL:0002319;2.61e-18;25!CL:0000095;1.21e-10;17!CL:0002605;4.91e-10;3!CL:0000243;1.17e-09;15!CL:0000125;1.17e-09;15!CL:0002603;1.45e-09;3!CL:0000047;2.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,5.55e-20,7;CL:0000126,5.55e-20,7;CL:0000127,5.55e-20,7;CL:0002453,5.55e-20,7;CL:0002319,3.03e-18,25;CL:0000095,1.38e-10,17;CL:0000123,1.38e-10,17;CL:0002605,4.99e-10,3;CL:0000047,8.91e-10,8;CL:0002603,1.31e-09,3;CL:0000243,1.31e-09,15;CL:0000125,1.31e-09,15;CL:0000030,1.31e-09,15;CL:0000339,1.31e-09,15;CL:0000133,3.54e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000339;1.17e-09;15!UBERON:0006601;4.03e-09;82!UBERON:0006215;9.15e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.20e-88!82;UBERON:0005743!5.81e-86!86;UBERON:0000073!1.59e-78!94;UBERON:0001016!1.59e-78!94;UBERON:0001049!9.78e-73!57;UBERON:0005068!9.78e-73!57;UBERON:0006241!9.78e-73!57;UBERON:0007135!9.78e-73!57;UBERON:0000955!1.71e-69!69;UBERON:0006238!1.71e-69!69;UBERON:0002616!2.81e-66!59;UBERON:0002346!1.30e-56!90;UBERON:0003075!2.79e-53!86;UBERON:0007284!2.79e-53!86;UBERON:0001893!2.67e-52!34;UBERON:0002020!4.14e-52!34;UBERON:0003528!4.14e-52!34;UBERON:0002791!1.39e-50!33;UBERON:0002780!2.47e-50!41;UBERON:0001890!2.47e-50!41;UBERON:0006240!2.47e-50!41;UBERON:0001869!1.27e-49!32;UBERON:0003080!6.97e-49!42;UBERON:0000924!4.41e-45!173;UBERON:0006601!4.41e-45!173;UBERON:0004121!3.76e-42!169;UBERON:0000956!4.29e-38!25;UBERON:0000203!4.29e-38!25;UBERON:0000033!4.42e-38!123;UBERON:0003056!2.78e-36!61;UBERON:0000153!1.64e-35!129;UBERON:0007811!1.64e-35!129;UBERON:0002619!1.62e-32!22;UBERON:0001950!4.62e-29!20;UBERON:0007023!9.92e-27!115;UBERON:0003076!2.44e-24!15;UBERON:0003057!2.44e-24!15;UBERON:0004733!5.76e-20!12;UBERON:0002028!5.76e-20!12;UBERON:0007277!5.76e-20!12;UBERON:0004732!3.49e-18!13;UBERON:0002680!5.08e-16!9;UBERON:0001895!5.08e-16!9;UBERON:0010092!5.08e-16!9;UBERON:0002420!2.57e-15!9;UBERON:0007245!2.57e-15!9;UBERON:0010009!2.57e-15!9;UBERON:0010011!2.57e-15!9;UBERON:0000454!2.57e-15!9;UBERON:0002308!3.35e-15!9;UBERON:0000125!3.35e-15!9;UBERON:0000025!9.48e-14!194;UBERON:0009663!2.61e-12!7;UBERON:0002037!8.57e-12!6;UBERON:0006215!8.57e-12!6;UBERON:0001871!4.51e-11!7;UBERON:0002021!5.42e-10!5;UBERON:0000064!6.84e-10!219;UBERON:0001872!7.03e-10!5;UBERON:0000349!7.72e-10!5;UBERON:0002298!1.70e-09!8;UBERON:0000369!2.00e-08!4;UBERON:0002435!2.00e-08!4;UBERON:0000204!2.00e-08!4;UBERON:0010082!2.00e-08!4;UBERON:0004111!2.14e-08!241;UBERON:0000483!5.34e-08!309;UBERON:0000200!7.39e-08!6;UBERON:0000119!8.84e-08!312;UBERON:0000477!3.65e-07!286;UBERON:0000922!6.64e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.37e-58;32!UBERON:0001893;5.53e-57;34!UBERON:0003528;1.89e-56;34!UBERON:0002020;1.89e-56;34!UBERON:0002791;1.44e-54;32!UBERON:0000956;5.35e-52;25!UBERON:0000203;5.35e-52;25!UBERON:0002780;3.36e-44;41!UBERON:0001890;3.36e-44;41!UBERON:0002619;9.38e-44;22!UBERON:0001950;9.38e-39;20!UBERON:0000073;1.98e-38;53!UBERON:0002616;1.98e-38;53!UBERON:0001017;1.51e-33;75!UBERON:0000955;1.81e-30;68!UBERON:0001016;4.82e-27;83!UBERON:0002680;1.83e-18;9!UBERON:0001895;1.83e-18;9!UBERON:0002037;1.28e-16;6!UBERON:0002021;3.87e-14;5!UBERON:0000125;5.11e-14;9!UBERON:0002308;5.11e-14;9!UBERON:0001872;5.18e-14;5!UBERON:0004733;1.70e-13;12!UBERON:0002028;1.70e-13;12!UBERON:0004732;2.38e-12;13!UBERON:0000369;7.96e-12;4!UBERON:0002435;7.96e-12;4!UBERON:0000204;7.96e-12;4!UBERON:0000200;5.28e-11;6!UBERON:0002420;1.02e-10;9!UBERON:0007245;1.02e-10;9!UBERON:0010009;1.02e-10;9!UBERON:0010011;1.02e-10;9!UBERON:0000454;1.02e-10;9!UBERON:0011216;1.33e-10;132!UBERON:0001871;5.98e-10;6!UBERON:0009663;6.84e-10;7!UBERON:0000349;2.04e-09;5!UBERON:0005383;3.09e-09;3!UBERON:0005382;3.09e-09;3!UBERON:0007023;3.07e-08;114!UBERON:0000922;8.52e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.20e-83,81;UBERON:0001049,2.11e-76,56;UBERON:0005068,2.11e-76,56;UBERON:0006241,2.11e-76,56;UBERON:0007135,2.11e-76,56;UBERON:0001016,3.81e-74,89;UBERON:0000073,3.53e-73,53;UBERON:0002616,3.53e-73,53;UBERON:0000955,6.26e-70,68;UBERON:0006238,6.26e-70,68;UBERON:0001893,5.06e-65,34;UBERON:0001869,5.88e-65,32;UBERON:0003528,9.23e-65,34;UBERON:0002020,9.23e-65,34;UBERON:0002780,2.02e-60,41;UBERON:0001890,2.02e-60,41;UBERON:0003080,2.02e-60,41;UBERON:0006240,2.02e-60,41;UBERON:0002791,2.70e-60,32;UBERON:0000956,4.16e-52,25;UBERON:0000203,4.16e-52,25;UBERON:0003075,9.47e-52,82;UBERON:0007284,9.47e-52,82;UBERON:0002346,1.44e-51,86;UBERON:0002619,7.25e-44,22;UBERON:0003056,6.80e-41,61;UBERON:0010371,1.42e-40,104;UBERON:0001950,9.22e-39,20;UBERON:0004121,6.21e-38,171;UBERON:0000924,6.21e-38,171;UBERON:0006601,6.21e-38,171;UBERON:0010314,1.24e-29,132;UBERON:0011216,3.58e-27,223;UBERON:0007023,5.00e-20,114;UBERON:0002680,1.39e-18,9;UBERON:0001895,1.39e-18,9;UBERON:0010092,1.39e-18,9;UBERON:0002037,8.53e-17,6;UBERON:0006215,8.53e-17,6;UBERON:0003076,1.53e-16,15;UBERON:0003057,1.53e-16,15;UBERON:0000025,8.87e-15,192;UBERON:0002021,4.10e-14,5;UBERON:0000125,4.96e-14,9;UBERON:0002308,4.96e-14,9;UBERON:0001872,6.04e-14,5;UBERON:0004733,1.39e-13,12;UBERON:0002028,1.39e-13,12;UBERON:0007277,1.39e-13,12;UBERON:0004732,1.98e-12,13;UBERON:0000369,8.80e-12,4;UBERON:0002435,8.80e-12,4;UBERON:0000204,8.80e-12,4;UBERON:0010082,8.80e-12,4;UBERON:0000200,3.83e-11,6;UBERON:0002420,9.68e-11,9;UBERON:0007245,9.68e-11,9;UBERON:0010009,9.68e-11,9;UBERON:0010011,9.68e-11,9;UBERON:0000454,9.68e-11,9;UBERON:0001871,5.48e-10,6;UBERON:0009663,6.28e-10,7;UBERON:0004111,8.27e-10,240;UBERON:0000349,1.79e-09,5;UBERON:0005383,3.18e-09,3;UBERON:0005382,3.18e-09,3;UBERON:0000483,6.62e-08,306;UBERON:0000119,9.94e-08,309;UBERON:0001954,7.80e-07,2;UBERON:0003022,7.80e-07,2;UBERON:0002421,7.80e-07,2;UBERON:0002600,7.80e-07,2 | |||
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|short_description=p3@LINC00461 | |||
}} | }} |
Latest revision as of 03:11, 19 September 2015
Short description: | p3@LINC00461 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00461_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_ENST00000502301, ENST00000506014, ENST00000513026, NR_024383, uc011cub.1_5end |
EntrezGene: | LINC00461 |
HGNC: | 42810 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 5.55e-20 | 7 |
macroglial cell | 5.55e-20 | 7 |
astrocyte | 5.55e-20 | 7 |
oligodendrocyte precursor cell | 5.55e-20 | 7 |
neural cell | 3.03e-18 | 25 |
neuron associated cell | 1.38e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 1.38e-10 | 17 |
astrocyte of the cerebral cortex | 4.99e-10 | 3 |
neuronal stem cell | 8.91e-10 | 8 |
astrocyte of the cerebellum | 1.31e-09 | 3 |
glial cell (sensu Vertebrata) | 1.31e-09 | 15 |
glial cell | 1.31e-09 | 15 |
glioblast | 1.31e-09 | 15 |
glioblast (sensu Vertebrata) | 1.31e-09 | 15 |
neurectodermal cell | 3.54e-07 | 59 |