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{{f5samples
{{f5samples
|id=FF:10499-107C4
|DRA_sample_Accession=CAGE@SAMD00005715
|name=lung adenocarcinoma cell line:A549
|accession_numbers=CAGE;DRX007922;DRR008794;DRZ000219;DRZ001604;DRZ011569;DRZ012954
|sample_id=10499
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=107C4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305
|rna_position=C4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0104078,FF:0100353,FF:0101120,FF:0100762,FF:0102553,FF:0100018
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0098
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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NECUT2!0.66!3.59!ONECUT2;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.59!HOXA7;;chr1:164528410..164528428,+!p1@PBX1!0.65!30.62!PBX1;;chr1:75602043..75602093,+!p1@LHX8!0.65!3.42!LHX8;;chr1:164528616..164528660,+!p5@PBX1!0.64!7.53!PBX1;;chr3:12329358..12329393,+!p3@PPARG!0.63!9.07!PPARG;;chr17:41623075..41623101,-!p9@ETV4!0.63!3.93!ETV4;;chr5:137804357..137804390,+!p4@EGR1!0.63!3.93!EGR1;;chr20:46130672..46130686,+!p2@NCOA3!0.62!16.60!NCOA3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.91!ETV4;;chr9:20622444..20622468,-!p2@MLLT3!0.62!11.80!MLLT3;;chr2:46524878..46524891,+!p3@EPAS1!0.62!6.16!EPAS1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.08!DMRTA1;;chr6:10412576..10412599,-!p5@TFAP2A!0.61!3.08!TFAP2A;;chr7:101460882..101460923,+!p5@CUX1!0.61!3.08!CUX1;;chr20:22565370..22565388,-!p2@FOXA2!0.61!3.08!FOXA2;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.08!HOXC13;;chr16:1429627..1429662,-!p2@UNKL!0.60!10.27!UNKL;;chr10:97889464..97889494,+!p3@ZNF518A!0.60!6.16!ZNF518A;;chr22:29196492..29196503,-!p3@XBP1!0.60!4.96!XBP1;;chr14:75745523..75745537,+!p1@FOS!0.59!423.95!FOS;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.59!35.24!GLIS2;;chr10:94449675..94449694,+!p2@HHEX!0.59!8.90!HHEX;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.76!HOXC4;;chr8:72755987..72756002,-!p7@MSC!0.59!2.91!MSC;;chr3:69915369..69915381,+!p4@MITF!0.59!2.91!MITF;;chr1:151804244..151804310,-!p1@RORC!0.59!2.91!RORC;;chr1:212873200..212873230,-!p5@BATF3!0.59!2.91!BATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.57!41.57!ZC3H12A;;chr7:1570388..1570418,+!p2@MAFK!0.57!6.67!MAFK;;chr15:96875657..96875760,+!p14@NR2F2!0.57!4.96!NR2F2;;chr7:137686824..137686865,-!p2@CREB3L2!0.56!41.06!CREB3L2;;chr6:126240380..126240430,+!p2@NCOA7!0.56!8.04!NCOA7;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.36!SMAD6;;chr3:12329397..12329433,+!p2@PPARG!0.56!7.01!PPARG;;chr7:27135591..27135658,-!p1@HOXA1!0.56!5.82!HOXA1;;chr4:87857474..87857489,+!p7@AFF1!0.56!5.13!AFF1;;chr2:192015750..192015793,-!p2@STAT4!0.56!3.76!STAT4;;chr11:47279248..47279264,+!p3@NR1H3!0.56!3.08!NR1H3;;chr17:17740287..17740307,-!p1@SREBF1!0.55!85.54!SREBF1;;chr8:86089369..86089408,+!p1@E2F5!0.55!8.21!E2F5;;chr4:87857433..87857472,+!p9@AFF1!0.55!5.13!AFF1;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.59!TEAD1;;chr10:114886551..114886601,+!p11@TCF7L2!0.55!2.57!TCF7L2;;chr13:100623375..100623425,-!p1@ZIC5!0.55!2.57!ZIC5;;chr2:122042770..122042785,-!p1@TFCP2L1!0.55!2.57!TFCP2L1;;chr20:42984330..42984364,+!p2@HNF4A!0.55!2.57!HNF4A;;chr1:61547894..61547968,+!p2@NFIA!0.54!8.55!NFIA;;chr17:41623009..41623053,-!p4@ETV4!0.54!4.45!ETV4;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.53!20.87!ZNF410;;chr15:67357924..67357952,+!p2@SMAD3!0.53!20.19!SMAD3;;chr4:87928142..87928165,+!p5@AFF1!0.53!10.09!AFF1;;chr2:71127699..71127744,+!p1@VAX2!0.53!5.65!VAX2;;chr5:172662230..172662241,-!p3@NKX2-5!0.53!2.40!NKX2-5;;chr6:126221034..126221056,+!p13@NCOA7!0.53!2.40!NCOA7;;chr7:101917482..101917507,+!p6@CUX1!0.53!2.40!CUX1;;chr7:1577076..1577095,+!p5@MAFK!0.53!2.40!MAFK;;chr7:73038867..73038878,-!p2@MLXIPL!0.53!2.40!MLXIPL;;chr12:85674018..85674039,+!p3@ALX1!0.53!2.40!ALX1;;chr14:37131058..37131139,+!p1@PAX9!0.53!2.40!PAX9;;chr8:103667935..103667960,-!p1@KLF10!0.52!132.59!KLF10;;chr7:28448965..28448994,+!p2@CREB5!0.52!10.09!CREB5;;chr2:75937794..75937867,-!p2@GCFC2!0.52!5.99!GCFC2;;chr12:3068466..3068495,+!p3@TEAD4!0.52!5.82!TEAD4;;chr10:114710098..114710130,+!p2@TCF7L2!0.51!21.90!TCF7L2;;chr12:80084862..80084884,-!p7@PAWR!0.51!5.47!PAWR;;chr17:41622834..41622883,-!p6@ETV4!0.51!2.91!ETV4;;chr15:76629097..76629120,+!p2@ISL2!0.51!2.57!ISL2;;chr17:36105074..36105086,-!p2@HNF1B!0.51!2.22!HNF1B;;chr5:134369879..134369898,-!p2@PITX1!0.51!2.22!PITX1;;chr6:126102339..126102351,+!p12@NCOA7!0.51!2.22!NCOA7;;chr1:164600166..164600175,+!p47@PBX1!0.51!2.22!PBX1;;chr1:164600184..164600191,+!p38@PBX1!0.51!2.22!PBX1;;chr11:34663913..34663945,+!p6@EHF!0.51!2.22!EHF;;chr12:121416455..121416479,+!p2@HNF1A!0.51!2.22!HNF1A;;chr12:54394059..54394088,+!p3@HOXC9!0.51!2.22!HOXC9;;chr3:69915385..69915438,+!p3@MITF!0.51!2.22!MITF;;chr2:27357479..27357524,-!p1@PREB!0.50!81.27!PREB;;chr2:192015701..192015743,-!p1@STAT4!0.50!3.25!STAT4;;chr5:137801160..137801176,+!p1@EGR1!0.49!280.07!EGR1;;chr7:1570322..1570360,+!p1@MAFK!0.49!23.44!MAFK;;chr12:80084333..80084380,-!p4@PAWR!0.49!13.17!PAWR;;chr8:72756667..72756736,-!p2@MSC!0.49!3.76!MSC;;chr17:46688334..46688385,-!p1@HOXB7!0.49!3.42!HOXB7;;chr15:80696703..80696754,+!p1@ARNT2!0.49!3.08!ARNT2;;chr12:80084768..80084821,-!p2@PAWR!0.48!18.48!PAWR;;chr12:80084303..80084332,-!p1@PAWR!0.48!15.91!PAWR;;chr15:41913690..41913753,+!p2@MGA!0.48!5.99!MGA;;chr16:1429010..1429038,-!p5@UNKL!0.48!2.05!UNKL;;chr17:46690839..46690884,-!p1@HOXB8!0.48!2.05!HOXB8;;chr17:46806067..46806097,-!p1@HOXB13!0.48!2.05!HOXB13;;chr17:48045917..48045977,+!p1@DLX4!0.48!2.05!DLX4;;chr7:115608357..115608372,-!p3@TFEC!0.48!2.05!TFEC;;chr8:55370487..55370503,+!p1@SOX17!0.48!2.05!SOX17;;chr3:39196117..39196139,-!p4@CSRNP1!0.48!2.05!CSRNP1;;chr9:20621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|sample_dev_stage=
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|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=unknown
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.1
|rna_od260/280=2.08
|sample_cell_type=pneumocyte, type ii, great alveolar cell (septal cell)
|sample_cell_line=A549
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=lung adenocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=57.2335
|rna_concentration=2.28934
|sample_note=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
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|fonse_cell_line_closure=FF:0100353,FF:0101120
|fonse_cell_line_closure=FF:0100353,FF:0101120
Line 66: Line 40:
|fonse_treatment=
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|name=lung adenocarcinoma cell line:A549
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.28934
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.1
|rna_od260/280=2.08
|rna_position=C4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107C4
|rna_weight_ug=57.2335
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=RCB0098
|sample_cell_line=A549
|sample_cell_lot=
|sample_cell_type=pneumocyte, type ii, great alveolar cell (septal cell)
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=lung adenocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.76830277685886e-238!GO:0005737;cytoplasm;1.18594158694201e-209!GO:0043226;organelle;1.277398412414e-190!GO:0043229;intracellular organelle;2.95200140020963e-190!GO:0043231;intracellular membrane-bound organelle;5.7367241865587e-184!GO:0043227;membrane-bound organelle;1.08006184489982e-183!GO:0044444;cytoplasmic part;5.16104411386863e-160!GO:0044422;organelle part;8.82860215376004e-148!GO:0044446;intracellular organelle part;4.54999347425305e-146!GO:0032991;macromolecular complex;1.66100388283634e-95!GO:0030529;ribonucleoprotein complex;2.77279063122334e-88!GO:0044237;cellular metabolic process;8.8444258110765e-85!GO:0044238;primary metabolic process;1.76663751041131e-82!GO:0005739;mitochondrion;2.61330035231453e-78!GO:0003723;RNA binding;1.29823780508544e-76!GO:0043233;organelle lumen;1.23909768934117e-73!GO:0031974;membrane-enclosed lumen;1.23909768934117e-73!GO:0043170;macromolecule metabolic process;4.74583354349753e-69!GO:0044428;nuclear part;3.12400846420043e-66!GO:0005515;protein binding;8.94010719557343e-62!GO:0031090;organelle membrane;1.80449746847089e-61!GO:0005634;nucleus;1.71297160251776e-57!GO:0005840;ribosome;1.05938107627133e-54!GO:0006412;translation;5.74536828589038e-53!GO:0019538;protein metabolic process;1.21465085438864e-51!GO:0006396;RNA processing;1.98207078813026e-51!GO:0009058;biosynthetic process;4.15794398472089e-51!GO:0033036;macromolecule localization;1.0493446508992e-48!GO:0016043;cellular component organization and biogenesis;1.0885771710929e-48!GO:0015031;protein transport;1.29738596652948e-48!GO:0044429;mitochondrial part;2.13197331692443e-48!GO:0044260;cellular macromolecule metabolic process;1.57804466133903e-46!GO:0043234;protein complex;2.73681507921878e-46!GO:0044249;cellular biosynthetic process;3.64121508229814e-46!GO:0003735;structural constituent of ribosome;3.64378057912391e-46!GO:0044267;cellular protein metabolic process;3.76404963719099e-46!GO:0008104;protein localization;2.87762614504833e-45!GO:0045184;establishment of protein localization;2.87762614504833e-45!GO:0005829;cytosol;1.12261630707371e-43!GO:0009059;macromolecule biosynthetic process;2.21345539078789e-43!GO:0031981;nuclear lumen;3.06506077128956e-42!GO:0031967;organelle envelope;2.31048488695246e-41!GO:0031975;envelope;3.52664769023148e-41!GO:0033279;ribosomal subunit;1.45862776405259e-39!GO:0016071;mRNA metabolic process;2.28952243893986e-38!GO:0008380;RNA splicing;1.39098265580704e-35!GO:0046907;intracellular transport;3.62710363363837e-35!GO:0043283;biopolymer metabolic process;4.68275434034197e-34!GO:0006397;mRNA processing;5.08502165184301e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.44884946125262e-32!GO:0006996;organelle organization and biogenesis;4.82294820007375e-31!GO:0043228;non-membrane-bound organelle;6.75545120352889e-31!GO:0043232;intracellular non-membrane-bound organelle;6.75545120352889e-31!GO:0065003;macromolecular complex assembly;1.1630472431562e-30!GO:0005740;mitochondrial envelope;4.78694261923753e-30!GO:0006886;intracellular protein transport;3.58115575835394e-29!GO:0010467;gene expression;7.49771193789791e-29!GO:0012505;endomembrane system;3.21255006315402e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.55855367452283e-28!GO:0031966;mitochondrial membrane;9.15898741579519e-28!GO:0019866;organelle inner membrane;9.87484272147745e-28!GO:0000166;nucleotide binding;4.69665225639242e-27!GO:0022607;cellular component assembly;1.67661218379047e-26!GO:0005743;mitochondrial inner membrane;1.99432806114073e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.97561399817844e-26!GO:0051641;cellular localization;3.10207235344559e-25!GO:0051649;establishment of cellular localization;3.44225583553506e-25!GO:0005681;spliceosome;4.7474104881847e-25!GO:0005654;nucleoplasm;1.87808047412623e-24!GO:0005783;endoplasmic reticulum;6.50544879438612e-24!GO:0016874;ligase activity;2.7026059320134e-23!GO:0006457;protein folding;1.22024610361045e-22!GO:0044445;cytosolic part;1.86287292051531e-22!GO:0006119;oxidative phosphorylation;2.01328104674876e-22!GO:0031980;mitochondrial lumen;2.17447692761424e-22!GO:0005759;mitochondrial matrix;2.17447692761424e-22!GO:0006259;DNA metabolic process;2.47852203578273e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.45733590769996e-21!GO:0016462;pyrophosphatase activity;3.56246504627319e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.08284905750746e-21!GO:0015935;small ribosomal subunit;7.0049635248462e-21!GO:0051186;cofactor metabolic process;3.77691409922553e-20!GO:0044455;mitochondrial membrane part;5.63762991495929e-20!GO:0044432;endoplasmic reticulum part;6.2726091818997e-20!GO:0017111;nucleoside-triphosphatase activity;8.47042326783249e-20!GO:0015934;large ribosomal subunit;9.77607104612735e-20!GO:0044451;nucleoplasm part;1.18352357824171e-19!GO:0022618;protein-RNA complex assembly;1.71271513789196e-19!GO:0005730;nucleolus;1.72912035420289e-19!GO:0044265;cellular macromolecule catabolic process;7.86281104498836e-19!GO:0044248;cellular catabolic process;1.59264231862225e-18!GO:0006512;ubiquitin cycle;1.69077112018737e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.27055140707719e-18!GO:0017076;purine nucleotide binding;2.49674438179555e-18!GO:0006511;ubiquitin-dependent protein catabolic process;3.17191295743125e-18!GO:0032553;ribonucleotide binding;3.48493545830848e-18!GO:0032555;purine ribonucleotide binding;3.48493545830848e-18!GO:0019941;modification-dependent protein catabolic process;4.52402749135558e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.52402749135558e-18!GO:0044257;cellular protein catabolic process;5.35777451135744e-18!GO:0005794;Golgi apparatus;1.20030959422003e-17!GO:0007049;cell cycle;1.85191224599274e-17!GO:0043285;biopolymer catabolic process;3.15102409835207e-17!GO:0016192;vesicle-mediated transport;8.1985935315144e-17!GO:0006732;coenzyme metabolic process;8.67626036159287e-17!GO:0048770;pigment granule;2.53725583355447e-16!GO:0042470;melanosome;2.53725583355447e-16!GO:0008135;translation factor activity, nucleic acid binding;3.18563501253291e-16!GO:0005746;mitochondrial respiratory chain;3.55648110811414e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.71455659481543e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.94357442320449e-16!GO:0008134;transcription factor binding;6.01613929374977e-16!GO:0009057;macromolecule catabolic process;6.65475429120349e-16!GO:0005789;endoplasmic reticulum membrane;1.18730168581362e-15!GO:0005761;mitochondrial ribosome;1.74782857360407e-15!GO:0000313;organellar ribosome;1.74782857360407e-15!GO:0043412;biopolymer modification;3.17691138583175e-15!GO:0051082;unfolded protein binding;5.74950561720889e-15!GO:0030163;protein catabolic process;7.36440691604756e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.30220515288342e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.37467037507721e-15!GO:0003954;NADH dehydrogenase activity;9.37467037507721e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.37467037507721e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.49284409128196e-14!GO:0048193;Golgi vesicle transport;1.69257640696303e-14!GO:0003676;nucleic acid binding;1.71991095014537e-14!GO:0032559;adenyl ribonucleotide binding;2.18600527263704e-14!GO:0030554;adenyl nucleotide binding;2.26247370231886e-14!GO:0005524;ATP binding;2.93064924969144e-14!GO:0006974;response to DNA damage stimulus;5.31113390368688e-14!GO:0009055;electron carrier activity;7.04660004385011e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.00737311143642e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.07267323192196e-13!GO:0000375;RNA splicing, via transesterification reactions;1.07267323192196e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.07267323192196e-13!GO:0042254;ribosome biogenesis and assembly;1.68510836212617e-13!GO:0022402;cell cycle process;2.11551089181599e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.54619039998052e-13!GO:0042773;ATP synthesis coupled electron transport;3.54619039998052e-13!GO:0006464;protein modification process;4.30651055737995e-13!GO:0006605;protein targeting;5.95646241677981e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.99426603364355e-13!GO:0003743;translation initiation factor activity;6.25434559502766e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.13586581894115e-13!GO:0045271;respiratory chain complex I;8.13586581894115e-13!GO:0005747;mitochondrial respiratory chain complex I;8.13586581894115e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.8408624963546e-12!GO:0042623;ATPase activity, coupled;2.88336047520942e-12!GO:0006413;translational initiation;3.17875200662154e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.42829433283131e-12!GO:0016491;oxidoreductase activity;3.53636615797376e-12!GO:0016887;ATPase activity;4.02630674960041e-12!GO:0005635;nuclear envelope;4.43439255416881e-12!GO:0051188;cofactor biosynthetic process;1.18920549716833e-11!GO:0006399;tRNA metabolic process;1.27525055483236e-11!GO:0005768;endosome;1.3175403688722e-11!GO:0031965;nuclear membrane;1.539109445232e-11!GO:0008639;small protein conjugating enzyme activity;2.26652102371388e-11!GO:0009056;catabolic process;2.48565328601396e-11!GO:0000278;mitotic cell cycle;2.49081304505321e-11!GO:0005793;ER-Golgi intermediate compartment;2.70591390850354e-11!GO:0016604;nuclear body;4.3875288589719e-11!GO:0006281;DNA repair;4.9252677528851e-11!GO:0004842;ubiquitin-protein ligase activity;5.0276360914064e-11!GO:0006446;regulation of translational initiation;7.03287545945744e-11!GO:0019787;small conjugating protein ligase activity;7.62169679773145e-11!GO:0016881;acid-amino acid ligase activity;1.25374165439356e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.76631701075341e-10!GO:0003712;transcription cofactor activity;2.1735701521374e-10!GO:0043687;post-translational protein modification;2.38464247680709e-10!GO:0044453;nuclear membrane part;2.8609938991016e-10!GO:0006461;protein complex assembly;4.1316267832939e-10!GO:0012501;programmed cell death;5.07788415451229e-10!GO:0009108;coenzyme biosynthetic process;5.09739371103462e-10!GO:0009719;response to endogenous stimulus;5.87311164783082e-10!GO:0006915;apoptosis;9.15165793213926e-10!GO:0009259;ribonucleotide metabolic process;1.68886658281589e-09!GO:0016070;RNA metabolic process;1.8751510650994e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.2250514544929e-09!GO:0008565;protein transporter activity;2.34318656863893e-09!GO:0006163;purine nucleotide metabolic process;2.59813920146098e-09!GO:0044431;Golgi apparatus part;2.70323174796614e-09!GO:0016607;nuclear speck;2.82864731459451e-09!GO:0045333;cellular respiration;2.82864731459451e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.8588767397827e-09!GO:0009060;aerobic respiration;2.88181536051889e-09!GO:0051276;chromosome organization and biogenesis;3.56025989963455e-09!GO:0007005;mitochondrion organization and biogenesis;3.7477402990201e-09!GO:0000087;M phase of mitotic cell cycle;4.28235562040124e-09!GO:0006364;rRNA processing;5.20488683789136e-09!GO:0004386;helicase activity;6.31977748178172e-09!GO:0007067;mitosis;6.36764731761926e-09!GO:0008219;cell death;6.69729512190782e-09!GO:0016265;death;6.69729512190782e-09!GO:0008026;ATP-dependent helicase activity;7.11664999090483e-09!GO:0051301;cell division;7.11664999090483e-09!GO:0016072;rRNA metabolic process;8.19887530696654e-09!GO:0065002;intracellular protein transport across a membrane;9.55799055467979e-09!GO:0006091;generation of precursor metabolites and energy;9.64666444713699e-09!GO:0005643;nuclear pore;1.11924592628003e-08!GO:0006164;purine nucleotide biosynthetic process;1.22783475536975e-08!GO:0006366;transcription from RNA polymerase II promoter;1.2586175506285e-08!GO:0009150;purine ribonucleotide metabolic process;1.41058351673393e-08!GO:0006913;nucleocytoplasmic transport;1.46034190546186e-08!GO:0015986;ATP synthesis coupled proton transport;1.54079350130852e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.54079350130852e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.94720571175654e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.94720571175654e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.94720571175654e-08!GO:0015630;microtubule cytoskeleton;2.03827991528048e-08!GO:0043038;amino acid activation;2.22601727856955e-08!GO:0006418;tRNA aminoacylation for protein translation;2.22601727856955e-08!GO:0043039;tRNA aminoacylation;2.22601727856955e-08!GO:0009260;ribonucleotide biosynthetic process;2.40495013966021e-08!GO:0051169;nuclear transport;2.67162242365669e-08!GO:0030120;vesicle coat;2.7662989877449e-08!GO:0030662;coated vesicle membrane;2.7662989877449e-08!GO:0019829;cation-transporting ATPase activity;3.30817711258495e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.41865734237774e-08!GO:0009117;nucleotide metabolic process;3.49196992618964e-08!GO:0032446;protein modification by small protein conjugation;3.55966526928045e-08!GO:0009141;nucleoside triphosphate metabolic process;4.54843280906912e-08!GO:0006260;DNA replication;4.67944889234516e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.7034497832555e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.90020431670205e-08!GO:0016740;transferase activity;4.90262321313972e-08!GO:0016567;protein ubiquitination;5.09068685348723e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.52915595283697e-08!GO:0051246;regulation of protein metabolic process;6.67212403915017e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.68205728927702e-08!GO:0051726;regulation of cell cycle;7.21872072739436e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.43583678315959e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.43583678315959e-08!GO:0000139;Golgi membrane;7.66924102245583e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.70141454284192e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.70141454284192e-08!GO:0048475;coated membrane;7.9620593969052e-08!GO:0030117;membrane coat;7.9620593969052e-08!GO:0050657;nucleic acid transport;7.9620593969052e-08!GO:0051236;establishment of RNA localization;7.9620593969052e-08!GO:0050658;RNA transport;7.9620593969052e-08!GO:0006403;RNA localization;8.37132064606652e-08!GO:0000074;regulation of progression through cell cycle;8.52440780514792e-08!GO:0006082;organic acid metabolic process;9.80665195787726e-08!GO:0031982;vesicle;1.04210218044474e-07!GO:0005770;late endosome;1.04210218044474e-07!GO:0019752;carboxylic acid metabolic process;1.06565199934655e-07!GO:0046930;pore complex;1.34283910477292e-07!GO:0051187;cofactor catabolic process;1.36248715159962e-07!GO:0006323;DNA packaging;1.37999984912626e-07!GO:0031410;cytoplasmic vesicle;1.386510766555e-07!GO:0044440;endosomal part;1.48123863375197e-07!GO:0010008;endosome membrane;1.48123863375197e-07!GO:0031988;membrane-bound vesicle;1.57061649432139e-07!GO:0046034;ATP metabolic process;1.57061649432139e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.61490645919491e-07!GO:0022403;cell cycle phase;1.61490645919491e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.71976100031296e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.71976100031296e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.71976100031296e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.95762827123478e-07!GO:0005694;chromosome;2.2359113329815e-07!GO:0016787;hydrolase activity;2.29078666517317e-07!GO:0043566;structure-specific DNA binding;2.4416080772898e-07!GO:0006099;tricarboxylic acid cycle;2.65034146602417e-07!GO:0046356;acetyl-CoA catabolic process;2.65034146602417e-07!GO:0006754;ATP biosynthetic process;2.66953803881202e-07!GO:0006753;nucleoside phosphate metabolic process;2.66953803881202e-07!GO:0000245;spliceosome assembly;4.46603253584822e-07!GO:0009109;coenzyme catabolic process;6.08651318503236e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.19774678534634e-07!GO:0006084;acetyl-CoA metabolic process;6.75232530585934e-07!GO:0016779;nucleotidyltransferase activity;9.68693779448937e-07!GO:0003924;GTPase activity;1.34171534714639e-06!GO:0043623;cellular protein complex assembly;1.59598658534864e-06!GO:0005525;GTP binding;1.65281181615523e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.77892695949309e-06!GO:0000279;M phase;1.80809629729378e-06!GO:0006752;group transfer coenzyme metabolic process;1.81464264987248e-06!GO:0017038;protein import;1.8413699344732e-06!GO:0045259;proton-transporting ATP synthase complex;2.30686026156027e-06!GO:0016568;chromatin modification;2.87468268445833e-06!GO:0044427;chromosomal part;3.07738135093198e-06!GO:0051028;mRNA transport;3.15711468234236e-06!GO:0000151;ubiquitin ligase complex;3.21138005472539e-06!GO:0016853;isomerase activity;3.21138005472539e-06!GO:0006613;cotranslational protein targeting to membrane;3.37671667815793e-06!GO:0043067;regulation of programmed cell death;3.44749205288334e-06!GO:0005798;Golgi-associated vesicle;3.53908552539521e-06!GO:0006793;phosphorus metabolic process;3.64825993861579e-06!GO:0006796;phosphate metabolic process;3.64825993861579e-06!GO:0048523;negative regulation of cellular process;4.06271793146751e-06!GO:0005773;vacuole;4.0799085858936e-06!GO:0042981;regulation of apoptosis;4.73785716901587e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.98010099222202e-06!GO:0065004;protein-DNA complex assembly;5.52293736848456e-06!GO:0051427;hormone receptor binding;8.19176220972419e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.27703531587454e-06!GO:0003714;transcription corepressor activity;1.01025578051367e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.10360739485871e-05!GO:0015399;primary active transmembrane transporter activity;1.10360739485871e-05!GO:0045454;cell redox homeostasis;1.11417369599465e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.18896939016754e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.24331437275713e-05!GO:0005667;transcription factor complex;1.3103743163373e-05!GO:0008654;phospholipid biosynthetic process;1.44051453688224e-05!GO:0043069;negative regulation of programmed cell death;1.46986449806143e-05!GO:0005813;centrosome;1.49295306118192e-05!GO:0003713;transcription coactivator activity;1.54411659842802e-05!GO:0035257;nuclear hormone receptor binding;1.78336429694296e-05!GO:0050662;coenzyme binding;1.81591443005282e-05!GO:0005762;mitochondrial large ribosomal subunit;1.81591443005282e-05!GO:0000315;organellar large ribosomal subunit;1.81591443005282e-05!GO:0043021;ribonucleoprotein binding;1.8645404035014e-05!GO:0005788;endoplasmic reticulum lumen;2.14389991556476e-05!GO:0000323;lytic vacuole;2.25470263494258e-05!GO:0005764;lysosome;2.25470263494258e-05!GO:0005815;microtubule organizing center;2.30774903776071e-05!GO:0016563;transcription activator activity;2.54528769711953e-05!GO:0006333;chromatin assembly or disassembly;2.55434230387431e-05!GO:0032561;guanyl ribonucleotide binding;2.89776751026557e-05!GO:0019001;guanyl nucleotide binding;2.89776751026557e-05!GO:0008610;lipid biosynthetic process;3.0260688239305e-05!GO:0000314;organellar small ribosomal subunit;3.02894890307863e-05!GO:0005763;mitochondrial small ribosomal subunit;3.02894890307863e-05!GO:0048519;negative regulation of biological process;3.21396777010846e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.29715721717817e-05!GO:0043066;negative regulation of apoptosis;3.55055028665062e-05!GO:0003724;RNA helicase activity;4.25523845321922e-05!GO:0006916;anti-apoptosis;4.37558613680492e-05!GO:0004298;threonine endopeptidase activity;4.72527190515633e-05!GO:0048471;perinuclear region of cytoplasm;5.384509485893e-05!GO:0045045;secretory pathway;6.28206005922865e-05!GO:0003690;double-stranded DNA binding;6.53807790520998e-05!GO:0003697;single-stranded DNA binding;6.75511820828326e-05!GO:0016859;cis-trans isomerase activity;6.75511820828326e-05!GO:0016310;phosphorylation;6.75511820828326e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.07338907105447e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.59778785490332e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.13625686982024e-05!GO:0016564;transcription repressor activity;8.6076805395421e-05!GO:0003899;DNA-directed RNA polymerase activity;0.000109349797156027!GO:0008033;tRNA processing;0.000127921251107029!GO:0048037;cofactor binding;0.000127921251107029!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000128086225746849!GO:0005769;early endosome;0.00013258352820929!GO:0030133;transport vesicle;0.00013362376927088!GO:0000785;chromatin;0.000135673105469197!GO:0051789;response to protein stimulus;0.000142312254301298!GO:0006986;response to unfolded protein;0.000142312254301298!GO:0031252;leading edge;0.000163320575758113!GO:0009165;nucleotide biosynthetic process;0.000169873185591853!GO:0043492;ATPase activity, coupled to movement of substances;0.000183673869327184!GO:0031324;negative regulation of cellular metabolic process;0.000187303178147825!GO:0019843;rRNA binding;0.000194408712769069!GO:0005819;spindle;0.000194998268996427!GO:0006118;electron transport;0.000204522586629137!GO:0007010;cytoskeleton organization and biogenesis;0.000206358190019133!GO:0030867;rough endoplasmic reticulum membrane;0.000207321428520962!GO:0043681;protein import into mitochondrion;0.00020893527336627!GO:0004576;oligosaccharyl transferase activity;0.000225996137943116!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00022966165057771!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000245238969581667!GO:0045786;negative regulation of progression through cell cycle;0.000246612108267382!GO:0006520;amino acid metabolic process;0.000247475676600333!GO:0009892;negative regulation of metabolic process;0.00026435428999706!GO:0005905;coated pit;0.00028013701548637!GO:0006672;ceramide metabolic process;0.000282988069769863!GO:0051287;NAD binding;0.000315630641781649!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000318827067261661!GO:0035258;steroid hormone receptor binding;0.000326911640790008!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000329975293671017!GO:0051170;nuclear import;0.000331050258638464!GO:0008250;oligosaccharyl transferase complex;0.000344868234380715!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000348338585540748!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000361622398561275!GO:0030658;transport vesicle membrane;0.000370513264709184!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000373627501767687!GO:0005048;signal sequence binding;0.000373627501767687!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000374771821465413!GO:0006626;protein targeting to mitochondrion;0.000386758780325844!GO:0046483;heterocycle metabolic process;0.000386795365653038!GO:0006612;protein targeting to membrane;0.000406964660321201!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.000453950123693604!GO:0051168;nuclear export;0.000467482601198429!GO:0044262;cellular carbohydrate metabolic process;0.000469758433590762!GO:0019899;enzyme binding;0.000474300468980053!GO:0016363;nuclear matrix;0.000502638920383807!GO:0044255;cellular lipid metabolic process;0.000511675278614708!GO:0007006;mitochondrial membrane organization and biogenesis;0.000545606101170915!GO:0016044;membrane organization and biogenesis;0.000546162409104233!GO:0030659;cytoplasmic vesicle membrane;0.000557255531421258!GO:0006839;mitochondrial transport;0.000587694649452829!GO:0006414;translational elongation;0.000622040897221869!GO:0046467;membrane lipid biosynthetic process;0.000646704602503786!GO:0005885;Arp2/3 protein complex;0.000658784616209795!GO:0031072;heat shock protein binding;0.000727391999708648!GO:0030176;integral to endoplasmic reticulum membrane;0.000733858893255758!GO:0005874;microtubule;0.000759900250527444!GO:0030880;RNA polymerase complex;0.000764792570789199!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000764792570789199!GO:0046519;sphingoid metabolic process;0.000773521399644898!GO:0044433;cytoplasmic vesicle part;0.000777908813499787!GO:0006606;protein import into nucleus;0.000850051642476201!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000851359119185353!GO:0051052;regulation of DNA metabolic process;0.000857688927928656!GO:0008361;regulation of cell size;0.000857688927928656!GO:0046474;glycerophospholipid biosynthetic process;0.00087029783663926!GO:0007051;spindle organization and biogenesis;0.000876722510628457!GO:0018196;peptidyl-asparagine modification;0.000892698910453958!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000892698910453958!GO:0046489;phosphoinositide biosynthetic process;0.000897833014885996!GO:0012506;vesicle membrane;0.00094076021634228!GO:0046983;protein dimerization activity;0.000941997635479443!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000972575953599285!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000972575953599285!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000972575953599285!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000972575953599285!GO:0006261;DNA-dependent DNA replication;0.00097509016812885!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000978821707362194!GO:0022890;inorganic cation transmembrane transporter activity;0.000987532754678829!GO:0030660;Golgi-associated vesicle membrane;0.00102489212973095!GO:0007264;small GTPase mediated signal transduction;0.00104386986463631!GO:0006891;intra-Golgi vesicle-mediated transport;0.00107144920797821!GO:0006818;hydrogen transport;0.00111652618008029!GO:0022406;membrane docking;0.00113160751530125!GO:0048278;vesicle docking;0.00113160751530125!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0011659534589387!GO:0048500;signal recognition particle;0.0011991605754996!GO:0044452;nucleolar part;0.0012605744859071!GO:0031902;late endosome membrane;0.00134699624977881!GO:0031968;organelle outer membrane;0.00136068757300902!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00140537112563968!GO:0019867;outer membrane;0.00142502192538086!GO:0006767;water-soluble vitamin metabolic process;0.00149056395497928!GO:0015992;proton transport;0.00151873968982154!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00156181371389954!GO:0000428;DNA-directed RNA polymerase complex;0.00156181371389954!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00156840501146322!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00156840501146322!GO:0016049;cell growth;0.00157034618332196!GO:0065009;regulation of a molecular function;0.00157744822897505!GO:0007017;microtubule-based process;0.00162523653884509!GO:0016126;sterol biosynthetic process;0.00168338734131458!GO:0006402;mRNA catabolic process;0.00174613015876755!GO:0000049;tRNA binding;0.00176627082833138!GO:0003729;mRNA binding;0.00186003283887024!GO:0006904;vesicle docking during exocytosis;0.00189545587787842!GO:0008092;cytoskeletal protein binding;0.00192607014661601!GO:0005791;rough endoplasmic reticulum;0.00195007008924407!GO:0006334;nucleosome assembly;0.00195342703462032!GO:0006383;transcription from RNA polymerase III promoter;0.00204128007349002!GO:0008186;RNA-dependent ATPase activity;0.00208804269464631!GO:0006733;oxidoreduction coenzyme metabolic process;0.00215419208821276!GO:0006650;glycerophospholipid metabolic process;0.00221316325278061!GO:0030118;clathrin coat;0.00223063730667131!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00245716375195453!GO:0006629;lipid metabolic process;0.00246452641704602!GO:0032940;secretion by cell;0.00253037183503428!GO:0005684;U2-dependent spliceosome;0.00260629138911476!GO:0000096;sulfur amino acid metabolic process;0.00267563502895043!GO:0030663;COPI coated vesicle membrane;0.00272158808843035!GO:0030126;COPI vesicle coat;0.00272158808843035!GO:0003684;damaged DNA binding;0.0028338566335487!GO:0006749;glutathione metabolic process;0.00284354010313672!GO:0042802;identical protein binding;0.00286888004904895!GO:0001558;regulation of cell growth;0.0029869169579928!GO:0030134;ER to Golgi transport vesicle;0.00299990653934564!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00305640552215022!GO:0045047;protein targeting to ER;0.00305640552215022!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00305932924551766!GO:0048522;positive regulation of cellular process;0.00309245913471243!GO:0030521;androgen receptor signaling pathway;0.00318265041312763!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00323496420816667!GO:0006769;nicotinamide metabolic process;0.00324599868146944!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324850011111639!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324850011111639!GO:0008312;7S RNA binding;0.00332239875856543!GO:0030127;COPII vesicle coat;0.00333942940135569!GO:0012507;ER to Golgi transport vesicle membrane;0.00333942940135569!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0034455894380643!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00376198176834105!GO:0031497;chromatin assembly;0.00398462418743748!GO:0051540;metal cluster binding;0.00398462418743748!GO:0051536;iron-sulfur cluster binding;0.00398462418743748!GO:0016741;transferase activity, transferring one-carbon groups;0.00401013223468675!GO:0006519;amino acid and derivative metabolic process;0.004036943892847!GO:0006352;transcription initiation;0.00403991929788814!GO:0008022;protein C-terminus binding;0.00413002229140455!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00429036847550395!GO:0005741;mitochondrial outer membrane;0.00438329973643932!GO:0031970;organelle envelope lumen;0.00455346031102155!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00465225904639378!GO:0048487;beta-tubulin binding;0.00465817826853491!GO:0030433;ER-associated protein catabolic process;0.00465817826853491!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00465817826853491!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00467539737224261!GO:0015002;heme-copper terminal oxidase activity;0.00467539737224261!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00467539737224261!GO:0004129;cytochrome-c oxidase activity;0.00467539737224261!GO:0006807;nitrogen compound metabolic process;0.00472056890650329!GO:0006695;cholesterol biosynthetic process;0.00472920476291063!GO:0051087;chaperone binding;0.00480795851253291!GO:0008168;methyltransferase activity;0.00486411315867273!GO:0006302;double-strand break repair;0.00488267908036713!GO:0006950;response to stress;0.00494318093272911!GO:0030137;COPI-coated vesicle;0.00495659898100269!GO:0004004;ATP-dependent RNA helicase activity;0.00515725283958865!GO:0030384;phosphoinositide metabolic process;0.00524860815294228!GO:0005758;mitochondrial intermembrane space;0.00528695393431417!GO:0016197;endosome transport;0.00537831122241715!GO:0006984;ER-nuclear signaling pathway;0.00542817724906996!GO:0030125;clathrin vesicle coat;0.00556971302023838!GO:0030665;clathrin coated vesicle membrane;0.00556971302023838!GO:0008632;apoptotic program;0.00567169724448796!GO:0015631;tubulin binding;0.00575933884006434!GO:0045941;positive regulation of transcription;0.00577709312489903!GO:0043022;ribosome binding;0.00587125562518151!GO:0000776;kinetochore;0.00598236429979763!GO:0006401;RNA catabolic process;0.0059952885677581!GO:0006081;aldehyde metabolic process;0.00618001619928889!GO:0050681;androgen receptor binding;0.00618001619928889!GO:0030132;clathrin coat of coated pit;0.00618001619928889!GO:0030036;actin cytoskeleton organization and biogenesis;0.00634208814612785!GO:0016481;negative regulation of transcription;0.00634888518162183!GO:0006892;post-Golgi vesicle-mediated transport;0.00651819025183321!GO:0007030;Golgi organization and biogenesis;0.00663823057367509!GO:0006611;protein export from nucleus;0.00665569546223401!GO:0006643;membrane lipid metabolic process;0.00667308750454396!GO:0045893;positive regulation of transcription, DNA-dependent;0.00673956442555207!GO:0009116;nucleoside metabolic process;0.00685355180530165!GO:0001726;ruffle;0.00698767931110444!GO:0000059;protein import into nucleus, docking;0.00702443463049743!GO:0006497;protein amino acid lipidation;0.0071325149666148!GO:0006506;GPI anchor biosynthetic process;0.00717911231349831!GO:0006289;nucleotide-excision repair;0.00720765804475018!GO:0016272;prefoldin complex;0.00720765804475018!GO:0009308;amine metabolic process;0.00731199238742694!GO:0009112;nucleobase metabolic process;0.00758311220435187!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00771481016389826!GO:0006417;regulation of translation;0.00781720341664675!GO:0016251;general RNA polymerase II transcription factor activity;0.00787982760952867!GO:0051252;regulation of RNA metabolic process;0.00819033436599845!GO:0043284;biopolymer biosynthetic process;0.00822289279727824!GO:0051329;interphase of mitotic cell cycle;0.00833798388436855!GO:0007052;mitotic spindle organization and biogenesis;0.00836576496984586!GO:0008139;nuclear localization sequence binding;0.0086530380381559!GO:0006740;NADPH regeneration;0.0087594408756361!GO:0006098;pentose-phosphate shunt;0.0087594408756361!GO:0003746;translation elongation factor activity;0.00884317378832181!GO:0051101;regulation of DNA binding;0.00910075539696096!GO:0004674;protein serine/threonine kinase activity;0.00910672895758492!GO:0007243;protein kinase cascade;0.00932909027485463!GO:0006595;polyamine metabolic process;0.00939680206846131!GO:0000287;magnesium ion binding;0.00947759223822462!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00978583268995486!GO:0006505;GPI anchor metabolic process;0.0097996186938361!GO:0007040;lysosome organization and biogenesis;0.0100354330082742!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0100974478767797!GO:0006778;porphyrin metabolic process;0.0108036737737863!GO:0033013;tetrapyrrole metabolic process;0.0108036737737863!GO:0000775;chromosome, pericentric region;0.0110376357036007!GO:0016791;phosphoric monoester hydrolase activity;0.0110876085499468!GO:0043488;regulation of mRNA stability;0.0111905788409284!GO:0043487;regulation of RNA stability;0.0111905788409284!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0116158091053389!GO:0030503;regulation of cell redox homeostasis;0.0118391101477823!GO:0050794;regulation of cellular process;0.0120684904514954!GO:0009303;rRNA transcription;0.0123009621275797!GO:0006066;alcohol metabolic process;0.0123622311117373!GO:0015036;disulfide oxidoreductase activity;0.0127047787836755!GO:0005832;chaperonin-containing T-complex;0.0127047787836755!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0131535830972629!GO:0051128;regulation of cellular component organization and biogenesis;0.013176245109658!GO:0008234;cysteine-type peptidase activity;0.013488632081568!GO:0051325;interphase;0.0135399491860951!GO:0000209;protein polyubiquitination;0.013596960791411!GO:0030119;AP-type membrane coat adaptor complex;0.0137287506431647!GO:0005996;monosaccharide metabolic process;0.0138290017207217!GO:0022415;viral reproductive process;0.0138657587541931!GO:0019362;pyridine nucleotide metabolic process;0.0138736719226202!GO:0016788;hydrolase activity, acting on ester bonds;0.0142644552049154!GO:0006487;protein amino acid N-linked glycosylation;0.0143779254769875!GO:0017166;vinculin binding;0.0146040632502823!GO:0008629;induction of apoptosis by intracellular signals;0.0146497960686332!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0146793338078082!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.014685582377634!GO:0051716;cellular response to stimulus;0.0151113500965741!GO:0005774;vacuolar membrane;0.0156763078338178!GO:0016584;nucleosome positioning;0.0159122403598209!GO:0006284;base-excision repair;0.0159344427745723!GO:0003756;protein disulfide isomerase activity;0.0162841589488454!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0162841589488454!GO:0043624;cellular protein complex disassembly;0.0163285487649832!GO:0042364;water-soluble vitamin biosynthetic process;0.016339244669106!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0167022719519801!GO:0004518;nuclease activity;0.0167989841299752!GO:0019318;hexose metabolic process;0.0168254010440802!GO:0030968;unfolded protein response;0.0171615749120707!GO:0051098;regulation of binding;0.0171615749120707!GO:0009451;RNA modification;0.0172869726758394!GO:0031326;regulation of cellular biosynthetic process;0.0175004834619819!GO:0030140;trans-Golgi network transport vesicle;0.0175004834619819!GO:0042158;lipoprotein biosynthetic process;0.0175543888794498!GO:0006541;glutamine metabolic process;0.0175543888794498!GO:0040008;regulation of growth;0.0183125067819748!GO:0005869;dynactin complex;0.0187629893803051!GO:0003711;transcription elongation regulator activity;0.0188975094245243!GO:0006400;tRNA modification;0.0189040414902333!GO:0009889;regulation of biosynthetic process;0.0190286473035558!GO:0030131;clathrin adaptor complex;0.019056369238564!GO:0006144;purine base metabolic process;0.019108750136658!GO:0008637;apoptotic mitochondrial changes;0.019166360985437!GO:0006739;NADP metabolic process;0.0201092024696194!GO:0008180;signalosome;0.0201422498161546!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0204394450953044!GO:0031124;mRNA 3'-end processing;0.0208531364491454!GO:0003682;chromatin binding;0.0210885374811327!GO:0030027;lamellipodium;0.0211886037580958!GO:0009119;ribonucleoside metabolic process;0.0212651947543122!GO:0000339;RNA cap binding;0.0215640244852498!GO:0006275;regulation of DNA replication;0.0216163461090884!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0222531391249587!GO:0007033;vacuole organization and biogenesis;0.0223196356124273!GO:0043433;negative regulation of transcription factor activity;0.0223243945931069!GO:0005862;muscle thin filament tropomyosin;0.022849003428824!GO:0008017;microtubule binding;0.023003732561696!GO:0003678;DNA helicase activity;0.0232017026898145!GO:0005975;carbohydrate metabolic process;0.023206091626186!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0235960441597599!GO:0016615;malate dehydrogenase activity;0.0246501148053164!GO:0047017;prostaglandin-F synthase activity;0.025787824940004!GO:0030029;actin filament-based process;0.0260476778811708!GO:0032984;macromolecular complex disassembly;0.0265684539287193!GO:0032200;telomere organization and biogenesis;0.0267420468216914!GO:0000723;telomere maintenance;0.0267420468216914!GO:0001666;response to hypoxia;0.0270797992520198!GO:0006378;mRNA polyadenylation;0.0270797992520198!GO:0000086;G2/M transition of mitotic cell cycle;0.0273422906370989!GO:0042168;heme metabolic process;0.0277145110841745!GO:0000075;cell cycle checkpoint;0.0280462355019424!GO:0006376;mRNA splice site selection;0.0280462355019424!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0280462355019424!GO:0008652;amino acid biosynthetic process;0.0282396410110226!GO:0006310;DNA recombination;0.0283065005635799!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0289954714985232!GO:0006405;RNA export from nucleus;0.0290547845143287!GO:0005784;translocon complex;0.0292485644281216!GO:0019783;small conjugating protein-specific protease activity;0.0292493416220776!GO:0001889;liver development;0.0292493416220776!GO:0005669;transcription factor TFIID complex;0.0292493416220776!GO:0004448;isocitrate dehydrogenase activity;0.0292959414757967!GO:0048144;fibroblast proliferation;0.0292959414757967!GO:0048145;regulation of fibroblast proliferation;0.0292959414757967!GO:0051539;4 iron, 4 sulfur cluster binding;0.0293243708363208!GO:0004177;aminopeptidase activity;0.029746466399065!GO:0007034;vacuolar transport;0.0299965139126056!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0303676909003798!GO:0010257;NADH dehydrogenase complex assembly;0.0303676909003798!GO:0033108;mitochondrial respiratory chain complex assembly;0.0303676909003798!GO:0047006;20-alpha-hydroxysteroid dehydrogenase activity;0.0310668543208382!GO:0030518;steroid hormone receptor signaling pathway;0.0315773726081894!GO:0005637;nuclear inner membrane;0.031596469930059!GO:0006007;glucose catabolic process;0.0316685076494394!GO:0004843;ubiquitin-specific protease activity;0.0318794469143749!GO:0030508;thiol-disulfide exchange intermediate activity;0.0318966171212146!GO:0006665;sphingolipid metabolic process;0.0325815374015672!GO:0031301;integral to organelle membrane;0.0326313581084642!GO:0031625;ubiquitin protein ligase binding;0.0326313581084642!GO:0044437;vacuolar part;0.0334119339414707!GO:0006897;endocytosis;0.0336289727919592!GO:0010324;membrane invagination;0.0336289727919592!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0337234211582202!GO:0048146;positive regulation of fibroblast proliferation;0.0342968561621727!GO:0009081;branched chain family amino acid metabolic process;0.0343628248486491!GO:0008287;protein serine/threonine phosphatase complex;0.0346340167992129!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0349047292649744!GO:0006338;chromatin remodeling;0.0355294715805623!GO:0005765;lysosomal membrane;0.0363190584829159!GO:0042769;DNA damage response, detection of DNA damage;0.0363250296526097!GO:0035035;histone acetyltransferase binding;0.0368716782427151!GO:0043130;ubiquitin binding;0.0368716782427151!GO:0032182;small conjugating protein binding;0.0368716782427151!GO:0005875;microtubule associated complex;0.0372631915293027!GO:0016790;thiolester hydrolase activity;0.037436688084533!GO:0006730;one-carbon compound metabolic process;0.0374786209178298!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.037507776045657!GO:0007004;telomere maintenance via telomerase;0.037507776045657!GO:0051920;peroxiredoxin activity;0.0376481526990949!GO:0022884;macromolecule transmembrane transporter activity;0.0378338217094441!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0378338217094441!GO:0046982;protein heterodimerization activity;0.0380581246907879!GO:0005876;spindle microtubule;0.0384034097953363!GO:0004527;exonuclease activity;0.0384494820930972!GO:0016311;dephosphorylation;0.0388045424301582!GO:0016125;sterol metabolic process;0.0397488328833355!GO:0043241;protein complex disassembly;0.0399654888440059!GO:0008320;protein transmembrane transporter activity;0.0399992346471251!GO:0006516;glycoprotein catabolic process;0.0403599784487886!GO:0050811;GABA receptor binding;0.0403599784487886!GO:0006010;glucose 6-phosphate utilization;0.040553434381458!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0407416464237573!GO:0051881;regulation of mitochondrial membrane potential;0.0407566585950154!GO:0031123;RNA 3'-end processing;0.0411260840234461!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0416418207658715!GO:0045039;protein import into mitochondrial inner membrane;0.0416418207658715!GO:0035267;NuA4 histone acetyltransferase complex;0.0416577022199324!GO:0043189;H4/H2A histone acetyltransferase complex;0.0426779023189287!GO:0006779;porphyrin biosynthetic process;0.0434684994623142!GO:0033014;tetrapyrrole biosynthetic process;0.0434684994623142!GO:0009225;nucleotide-sugar metabolic process;0.0439365844148218!GO:0005777;peroxisome;0.0446483517352649!GO:0042579;microbody;0.0446483517352649!GO:0006979;response to oxidative stress;0.0450596022555757!GO:0004221;ubiquitin thiolesterase activity;0.0456052839109222!GO:0004532;exoribonuclease activity;0.0460096254748563!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0460096254748563!GO:0050790;regulation of catalytic activity;0.0462766281393064!GO:0007050;cell cycle arrest;0.0464262982782152!GO:0046128;purine ribonucleoside metabolic process;0.0466458685507218!GO:0042278;purine nucleoside metabolic process;0.0466458685507218!GO:0006108;malate metabolic process;0.0473441922661205!GO:0030145;manganese ion binding;0.0477459448880779!GO:0031406;carboxylic acid binding;0.0490607319629141!GO:0051775;response to redox state;0.0490607319629141!GO:0006980;redox signal response;0.0490607319629141!GO:0008426;protein kinase C inhibitor activity;0.0492626158025353!GO:0008538;proteasome activator activity;0.049454180110615!GO:0042147;retrograde transport, endosome to Golgi;0.0496942526757154
|sample_id=10499
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=HNF1A:2.54467952568;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.02543620894;FOXQ1:1.95320475025;bHLH_family:1.7604812135;ADNP_IRX_SIX_ZHX:1.6603650593;ONECUT1,2:1.5150523197;MYOD1:1.39537476652;HNF4A_NR2F1,2:1.38763888423;HIF1A:1.27985755055;ESRRA:1.27006919926;NFE2L2:1.22654795638;FOX{I1,J2}:1.21001422813;PAX8:1.20301127157;ELK1,4_GABP{A,B1}:1.05925812306;FOX{F1,F2,J1}:0.980757242258;LHX3,4:0.978491396086;CEBPA,B_DDIT3:0.952070446645;SREBF1,2:0.882469415218;POU1F1:0.871231110088;NKX3-1:0.867223650413;PITX1..3:0.861978681843;LMO2:0.788809108694;NFE2:0.781868081712;TBX4,5:0.77595903442;TEF:0.714292508418;VSX1,2:0.661913998684;HSF1,2:0.649770293566;STAT5{A,B}:0.638656327208;FOXP1:0.621618943745;NRF1:0.59580943308;ZEB1:0.593561660653;SNAI1..3:0.529423244622;FOXN1:0.496829018287;EN1,2:0.488248409092;FOXD3:0.478306759976;AIRE:0.469738763132;FOXA2:0.469651671392;NANOG:0.457434124108;YY1:0.396323693747;PPARG:0.394427581803;ZNF143:0.373684154662;NFY{A,B,C}:0.373201502448;PAX1,9:0.36619918035;HOX{A5,B5}:0.366195659402;ZBTB16:0.353407181329;NR1H4:0.338305892193;SOX2:0.316536980181;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.314380361821;ATF6:0.306971262096;NFIX:0.292062560964;IKZF1:0.291898881441;CDC5L:0.278605456485;SP1:0.277319514862;CUX2:0.263467842844;ATF4:0.225310697889;RFX1:0.216196030132;EP300:0.209400708135;ALX1:0.199372501794;T:0.194132058585;NKX3-2:0.194110539706;PBX1:0.189788201281;ATF5_CREB3:0.189392062323;FOX{D1,D2}:0.185848435938;NFATC1..3:0.179033932871;PRRX1,2:0.17390479145;TFAP2B:0.163565623047;TEAD1:0.162093308352;ZNF148:0.157630735875;NR5A1,2:0.152637288605;ELF1,2,4:0.139920588407;DBP:0.132569727236;EBF1:0.109734141694;CRX:0.093475076382;BACH2:0.0920982001765;NKX6-1,2:0.089083497747;TP53:0.0766413138237;HLF:0.0600657510439;CREB1:0.0539616529895;PAX5:0.0413882350623;RFX2..5_RFXANK_RFXAP:0.0298350873063;RXRA_VDR{dimer}:0.0295731544365;STAT2,4,6:0.0269111596708;FOS_FOS{B,L1}_JUN{B,D}:0.0251235227095;POU5F1:0.0227795991206;AHR_ARNT_ARNT2:0.00600280189037;ZIC1..3:0.00248093533256;AR:-0.043423028669;TLX1..3_NFIC{dimer}:-0.0596931330432;PAX2:-0.0612660269032;PDX1:-0.065167029188;MYBL2:-0.0657310280501;LEF1_TCF7_TCF7L1,2:-0.0790780567651;PAX4:-0.0848770462393;CDX1,2,4:-0.0875950985505;HOX{A6,A7,B6,B7}:-0.0882457812524;SOX5:-0.0904273788506;HIC1:-0.0934996870634;MYB:-0.107661444829;E2F1..5:-0.128029136112;POU2F1..3:-0.137707698692;MEF2{A,B,C,D}:-0.138033966295;TFAP2{A,C}:-0.155108556496;FOSL2:-0.162348430814;HES1:-0.165022847865;GLI1..3:-0.165196677648;JUN:-0.171978510358;OCT4_SOX2{dimer}:-0.187290658025;EVI1:-0.196450641669;GTF2I:-0.212115735998;GATA6:-0.216357506314;ZFP161:-0.219976230548;XBP1:-0.220291731858;MTF1:-0.223945323789;NR6A1:-0.231512993833;ARID5B:-0.240818233969;XCPE1{core}:-0.247003905001;MED-1{core}:-0.252844871418;BREu{core}:-0.266020792313;TFCP2:-0.277209531251;TAL1_TCF{3,4,12}:-0.283910013448;NKX2-3_NKX2-5:-0.284388282169;GFI1B:-0.284548002093;TOPORS:-0.288627613314;FOXL1:-0.298679342059;MZF1:-0.304036263495;FOXP3:-0.31078974537;NFKB1_REL_RELA:-0.327960493854;HAND1,2:-0.331485239718;HMGA1,2:-0.338001020821;ESR1:-0.342200310684;POU6F1:-0.354753795851;RXR{A,B,G}:-0.35592351157;ZBTB6:-0.372570358894;PATZ1:-0.379077423261;MTE{core}:-0.383922492938;MAZ:-0.411243012062;NHLH1,2:-0.414592163269;ALX4:-0.416536325218;ZNF238:-0.426794435425;SOX17:-0.427383321196;NKX2-1,4:-0.447232371296;IRF7:-0.448185508527;RORA:-0.448415796376;BPTF:-0.463357621592;ATF2:-0.469399996273;EGR1..3:-0.498038596326;TFDP1:-0.519753766096;MAFB:-0.520992773198;TBP:-0.536341819298;REST:-0.548580874714;MYFfamily:-0.552174002361;SPI1:-0.559039986402;SOX{8,9,10}:-0.573048117122;ETS1,2:-0.588514031527;FOXM1:-0.589104947679;RBPJ:-0.615712052952;ZNF423:-0.616176044823;KLF4:-0.625892727556;RREB1:-0.640940288431;DMAP1_NCOR{1,2}_SMARC:-0.652211758493;NKX2-2,8:-0.653812958077;GFI1:-0.660317619669;HOXA9_MEIS1:-0.660802185258;GTF2A1,2:-0.696272909555;NR3C1:-0.69898330127;ZNF384:-0.723508598591;GZF1:-0.724781027649;RUNX1..3:-0.756903980001;NFIL3:-0.770904257;SPIB:-0.816417521081;UFEwm:-0.84996399643;PRDM1:-0.852022357221;SRF:-0.864484217669;HOX{A4,D4}:-0.864750006047;GCM1,2:-0.867844583469;TFAP4:-0.871602124497;IRF1,2:-0.889230913674;HBP1_HMGB_SSRP1_UBTF:-0.892119509928;GATA4:-0.898155976776;PAX6:-0.926453211108;IKZF2:-0.942383613052;TLX2:-1.01473232561;FOXO1,3,4:-1.02153722152;TGIF1:-1.04725888127;POU3F1..4:-1.09597730319;NANOG{mouse}:-1.14823243573;STAT1,3:-1.19115222983;SPZ1:-1.28453470926;NFE2L1:-1.37296139332;PAX3,7:-1.45016357139;SMAD1..7,9:-1.52462973533;HMX1:-1.8170246133
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10499-107C4;search_select_hide=table117:FF:10499-107C4
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:lung adenocarcinoma cell line:A549
Species:Human (Homo sapiens)
Library ID:CNhs11275
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
ageunknown
cell typepneumocyte, type ii, great alveolar cell (septal cell)
cell lineA549
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005715
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11275 CAGE DRX007922 DRR008794
Accession ID Hg19

Library idBAMCTSS
CNhs11275 DRZ000219 DRZ001604
Accession ID Hg38

Library idBAMCTSS
CNhs11275 DRZ011569 DRZ012954
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0598
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0377
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0608
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0686
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.18
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0651
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0983
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0686
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11275

Jaspar motifP-value
MA0002.20.0243
MA0003.10.45
MA0004.10.00922
MA0006.10.614
MA0007.10.869
MA0009.10.167
MA0014.13.31125e-4
MA0017.10.0034
MA0018.20.769
MA0019.10.0255
MA0024.10.659
MA0025.10.461
MA0027.10.52
MA0028.11.01919e-5
MA0029.10.744
MA0030.10.0356
MA0031.10.0639
MA0035.20.223
MA0038.10.85
MA0039.20.0012
MA0040.10.939
MA0041.10.943
MA0042.10.963
MA0043.10.0523
MA0046.13.02532e-45
MA0047.28.12078e-6
MA0048.10.41
MA0050.12.36198e-4
MA0051.10.024
MA0052.16.57912e-4
MA0055.12.61641e-4
MA0057.10.564
MA0058.10.00104
MA0059.10.0968
MA0060.10.668
MA0061.10.00916
MA0062.29.26424e-5
MA0065.20.177
MA0066.10.257
MA0067.10.658
MA0068.10.47
MA0069.10.458
MA0070.10.459
MA0071.10.836
MA0072.10.619
MA0073.10.819
MA0074.10.685
MA0076.11.00136e-5
MA0077.10.819
MA0078.10.565
MA0079.20.447
MA0080.28.50301e-7
MA0081.10.0289
MA0083.10.00752
MA0084.10.282
MA0087.10.198
MA0088.10.366
MA0090.10.15
MA0091.10.0187
MA0092.10.188
MA0093.10.00125
MA0099.24.25947e-4
MA0100.10.457
MA0101.10.506
MA0102.20.0362
MA0103.12.19882e-4
MA0104.20.0118
MA0105.12.12018e-4
MA0106.10.143
MA0107.10.101
MA0108.22.31879e-5
MA0111.10.775
MA0112.20.606
MA0113.10.0932
MA0114.17.84754e-6
MA0115.10.0353
MA0116.10.00908
MA0117.10.55
MA0119.10.361
MA0122.10.561
MA0124.10.221
MA0125.10.983
MA0131.10.215
MA0135.10.679
MA0136.13.60703e-4
MA0137.20.533
MA0138.20.0616
MA0139.19.35165e-5
MA0140.10.756
MA0141.10.218
MA0142.10.298
MA0143.10.447
MA0144.10.697
MA0145.10.751
MA0146.10.539
MA0147.10.0165
MA0148.12.27546e-4
MA0149.10.415
MA0150.16.11058e-4
MA0152.10.86
MA0153.14.66797e-42
MA0154.10.00847
MA0155.10.0904
MA0156.10.194
MA0157.10.975
MA0159.10.704
MA0160.10.125
MA0162.10.883
MA0163.10.0024
MA0164.10.332
MA0258.10.382
MA0259.10.164



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11275

Novel motifP-value
10.874
100.804
1000.02
1010.214
1020.181
1030.152
1040.785
1050.238
1060.024
1070.18
1080.982
1090.843
110.569
1100.711
1110.994
1120.168
1130.104
1140.864
1150.927
1160.678
1170.932
1180.917
1190.571
120.891
1200.294
1210.0132
1220.709
1230.205
1240.849
1250.18
1260.96
1270.162
1280.00318
1290.475
130.298
1300.853
1310.701
1320.436
1330.525
1340.908
1350.325
1360.174
1370.324
1380.584
1390.939
140.758
1400.732
1410.564
1420.628
1430.0196
1440.45
1450.0312
1460.709
1470.825
1480.847
1490.551
150.748
1500.232
1510.135
1520.803
1530.861
1540.966
1550.356
1560.778
1570.374
1580.0725
1590.0712
160.381
1600.11
1610.33
1620.167
1630.382
1640.405
1650.969
1660.86
1670.957
1680.406
1690.508
170.338
180.251
190.186
20.455
200.0434
210.893
220.0608
230.105
240.996
250.544
260.404
270.162
280.53
290.972
30.625
300.879
310.417
329.57509e-4
330.761
340.408
350.127
360.664
370.887
380.387
390.807
40.949
400.591
410.0193
420.605
430.0453
440.174
450.866
460.281
470.824
480.814
490.0587
50.643
500.47
510.314
520.594
530.812
540.755
550.761
560.825
570.947
580.598
590.087
60.679
600.233
610.0561
620.0725
630.858
640.523
650.0569
660.454
670.395
680.153
690.725
70.634
700.199
710.513
720.419
730.753
740.356
750.43
760.523
770.922
780.414
790.0692
80.436
800.437
810.475
820.044
830.542
840.407
850.393
860.807
870.034
880.721
890.0543
90.0258
900.474
910.0244
920.205
930.647
940.126
950.59
960.463
970.665
980.186
990.16



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11275


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0104078 (non-small cell lung adenocarcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0100018 (A-549 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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