FF:10499-107C4: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	lung adenocarcinoma cell line:A549
Species:	Human (Homo sapiens)
Library ID:	CNhs11275
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	unknown
cell type	pneumocyte, type ii, great alveolar cell (septal cell)
cell line	A549
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005715

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11275		CAGE		DRX007922		DRR008794

Accession ID Hg19

Library id		BAM		CTSS
CNhs11275		DRZ000219		DRZ001604

Accession ID Hg38

Library id		BAM		CTSS
CNhs11275		DRZ011569		DRZ012954

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0598
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0377
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0608
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0686
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.18
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0651
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0983
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0686
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11275

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0243
MA0003.1	MA0003.1	0.45
MA0004.1	MA0004.1	0.00922
MA0006.1	MA0006.1	0.614
MA0007.1	MA0007.1	0.869
MA0009.1	MA0009.1	0.167
MA0014.1	MA0014.1	3.31125e-4
MA0017.1	MA0017.1	0.0034
MA0018.2	MA0018.2	0.769
MA0019.1	MA0019.1	0.0255
MA0024.1	MA0024.1	0.659
MA0025.1	MA0025.1	0.461
MA0027.1	MA0027.1	0.52
MA0028.1	MA0028.1	1.01919e-5
MA0029.1	MA0029.1	0.744
MA0030.1	MA0030.1	0.0356
MA0031.1	MA0031.1	0.0639
MA0035.2	MA0035.2	0.223
MA0038.1	MA0038.1	0.85
MA0039.2	MA0039.2	0.0012
MA0040.1	MA0040.1	0.939
MA0041.1	MA0041.1	0.943
MA0042.1	MA0042.1	0.963
MA0043.1	MA0043.1	0.0523
MA0046.1	MA0046.1	3.02532e-45
MA0047.2	MA0047.2	8.12078e-6
MA0048.1	MA0048.1	0.41
MA0050.1	MA0050.1	2.36198e-4
MA0051.1	MA0051.1	0.024
MA0052.1	MA0052.1	6.57912e-4
MA0055.1	MA0055.1	2.61641e-4
MA0057.1	MA0057.1	0.564
MA0058.1	MA0058.1	0.00104
MA0059.1	MA0059.1	0.0968
MA0060.1	MA0060.1	0.668
MA0061.1	MA0061.1	0.00916
MA0062.2	MA0062.2	9.26424e-5
MA0065.2	MA0065.2	0.177
MA0066.1	MA0066.1	0.257
MA0067.1	MA0067.1	0.658
MA0068.1	MA0068.1	0.47
MA0069.1	MA0069.1	0.458
MA0070.1	MA0070.1	0.459
MA0071.1	MA0071.1	0.836
MA0072.1	MA0072.1	0.619
MA0073.1	MA0073.1	0.819
MA0074.1	MA0074.1	0.685
MA0076.1	MA0076.1	1.00136e-5
MA0077.1	MA0077.1	0.819
MA0078.1	MA0078.1	0.565
MA0079.2	MA0079.2	0.447
MA0080.2	MA0080.2	8.50301e-7
MA0081.1	MA0081.1	0.0289
MA0083.1	MA0083.1	0.00752
MA0084.1	MA0084.1	0.282
MA0087.1	MA0087.1	0.198
MA0088.1	MA0088.1	0.366
MA0090.1	MA0090.1	0.15
MA0091.1	MA0091.1	0.0187
MA0092.1	MA0092.1	0.188
MA0093.1	MA0093.1	0.00125
MA0099.2	MA0099.2	4.25947e-4
MA0100.1	MA0100.1	0.457
MA0101.1	MA0101.1	0.506
MA0102.2	MA0102.2	0.0362
MA0103.1	MA0103.1	2.19882e-4
MA0104.2	MA0104.2	0.0118
MA0105.1	MA0105.1	2.12018e-4
MA0106.1	MA0106.1	0.143
MA0107.1	MA0107.1	0.101
MA0108.2	MA0108.2	2.31879e-5
MA0111.1	MA0111.1	0.775
MA0112.2	MA0112.2	0.606
MA0113.1	MA0113.1	0.0932
MA0114.1	MA0114.1	7.84754e-6
MA0115.1	MA0115.1	0.0353
MA0116.1	MA0116.1	0.00908
MA0117.1	MA0117.1	0.55
MA0119.1	MA0119.1	0.361
MA0122.1	MA0122.1	0.561
MA0124.1	MA0124.1	0.221
MA0125.1	MA0125.1	0.983
MA0131.1	MA0131.1	0.215
MA0135.1	MA0135.1	0.679
MA0136.1	MA0136.1	3.60703e-4
MA0137.2	MA0137.2	0.533
MA0138.2	MA0138.2	0.0616
MA0139.1	MA0139.1	9.35165e-5
MA0140.1	MA0140.1	0.756
MA0141.1	MA0141.1	0.218
MA0142.1	MA0142.1	0.298
MA0143.1	MA0143.1	0.447
MA0144.1	MA0144.1	0.697
MA0145.1	MA0145.1	0.751
MA0146.1	MA0146.1	0.539
MA0147.1	MA0147.1	0.0165
MA0148.1	MA0148.1	2.27546e-4
MA0149.1	MA0149.1	0.415
MA0150.1	MA0150.1	6.11058e-4
MA0152.1	MA0152.1	0.86
MA0153.1	MA0153.1	4.66797e-42
MA0154.1	MA0154.1	0.00847
MA0155.1	MA0155.1	0.0904
MA0156.1	MA0156.1	0.194
MA0157.1	MA0157.1	0.975
MA0159.1	MA0159.1	0.704
MA0160.1	MA0160.1	0.125
MA0162.1	MA0162.1	0.883
MA0163.1	MA0163.1	0.0024
MA0164.1	MA0164.1	0.332
MA0258.1	MA0258.1	0.382
MA0259.1	MA0259.1	0.164

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11275

Novel motif	Logo	P-value
1	1	0.874
10	10	0.804
100	100	0.02
101	101	0.214
102	102	0.181
103	103	0.152
104	104	0.785
105	105	0.238
106	106	0.024
107	107	0.18
108	108	0.982
109	109	0.843
11	11	0.569
110	110	0.711
111	111	0.994
112	112	0.168
113	113	0.104
114	114	0.864
115	115	0.927
116	116	0.678
117	117	0.932
118	118	0.917
119	119	0.571
12	12	0.891
120	120	0.294
121	121	0.0132
122	122	0.709
123	123	0.205
124	124	0.849
125	125	0.18
126	126	0.96
127	127	0.162
128	128	0.00318
129	129	0.475
13	13	0.298
130	130	0.853
131	131	0.701
132	132	0.436
133	133	0.525
134	134	0.908
135	135	0.325
136	136	0.174
137	137	0.324
138	138	0.584
139	139	0.939
14	14	0.758
140	140	0.732
141	141	0.564
142	142	0.628
143	143	0.0196
144	144	0.45
145	145	0.0312
146	146	0.709
147	147	0.825
148	148	0.847
149	149	0.551
15	15	0.748
150	150	0.232
151	151	0.135
152	152	0.803
153	153	0.861
154	154	0.966
155	155	0.356
156	156	0.778
157	157	0.374
158	158	0.0725
159	159	0.0712
16	16	0.381
160	160	0.11
161	161	0.33
162	162	0.167
163	163	0.382
164	164	0.405
165	165	0.969
166	166	0.86
167	167	0.957
168	168	0.406
169	169	0.508
17	17	0.338
18	18	0.251
19	19	0.186
2	2	0.455
20	20	0.0434
21	21	0.893
22	22	0.0608
23	23	0.105
24	24	0.996
25	25	0.544
26	26	0.404
27	27	0.162
28	28	0.53
29	29	0.972
3	3	0.625
30	30	0.879
31	31	0.417
32	32	9.57509e-4
33	33	0.761
34	34	0.408
35	35	0.127
36	36	0.664
37	37	0.887
38	38	0.387
39	39	0.807
4	4	0.949
40	40	0.591
41	41	0.0193
42	42	0.605
43	43	0.0453
44	44	0.174
45	45	0.866
46	46	0.281
47	47	0.824
48	48	0.814
49	49	0.0587
5	5	0.643
50	50	0.47
51	51	0.314
52	52	0.594
53	53	0.812
54	54	0.755
55	55	0.761
56	56	0.825
57	57	0.947
58	58	0.598
59	59	0.087
6	6	0.679
60	60	0.233
61	61	0.0561
62	62	0.0725
63	63	0.858
64	64	0.523
65	65	0.0569
66	66	0.454
67	67	0.395
68	68	0.153
69	69	0.725
7	7	0.634
70	70	0.199
71	71	0.513
72	72	0.419
73	73	0.753
74	74	0.356
75	75	0.43
76	76	0.523
77	77	0.922
78	78	0.414
79	79	0.0692
8	8	0.436
80	80	0.437
81	81	0.475
82	82	0.044
83	83	0.542
84	84	0.407
85	85	0.393
86	86	0.807
87	87	0.034
88	88	0.721
89	89	0.0543
9	9	0.0258
90	90	0.474
91	91	0.0244
92	92	0.205
93	93	0.647
94	94	0.126
95	95	0.59
96	96	0.463
97	97	0.665
98	98	0.186
99	99	0.16

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11275

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100018 A-549 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0104078 (non-small cell lung adenocarcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0100018 (A-549 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004802,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0003104,UBERON:0000115,UBERON:0000464,UBERON:0001048,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0005157,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0002224,UBERON:0000915,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0005597,UBERON:0006595,UBERON:0006603,UBERON:0000118
+|DRA_sample_Accession=CAGE@SAMD00005715
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000082,CL:0000255
+|accession_numbers=CAGE;DRX007922;DRR008794;DRZ000219;DRZ001604;DRZ011569;DRZ012954
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0104078,FF:0100353,FF:0101120,FF:0100762,FF:0102553,FF:0100018
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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ONECUT2!0.66!3.59!ONECUT2;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.59!HOXA7;;chr1:164528410..164528428,+!p1@PBX1!0.65!30.62!PBX1;;chr1:75602043..75602093,+!p1@LHX8!0.65!3.42!LHX8;;chr1:164528616..164528660,+!p5@PBX1!0.64!7.53!PBX1;;chr3:12329358..12329393,+!p3@PPARG!0.63!9.07!PPARG;;chr17:41623075..41623101,-!p9@ETV4!0.63!3.93!ETV4;;chr5:137804357..137804390,+!p4@EGR1!0.63!3.93!EGR1;;chr20:46130672..46130686,+!p2@NCOA3!0.62!16.60!NCOA3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.91!ETV4;;chr9:20622444..20622468,-!p2@MLLT3!0.62!11.80!MLLT3;;chr2:46524878..46524891,+!p3@EPAS1!0.62!6.16!EPAS1;;chr9:22447422..22447483,+!p1@DMRTA1!0.61!3.08!DMRTA1;;chr6:10412576..10412599,-!p5@TFAP2A!0.61!3.08!TFAP2A;;chr7:101460882..101460923,+!p5@CUX1!0.61!3.08!CUX1;;chr20:22565370..22565388,-!p2@FOXA2!0.61!3.08!FOXA2;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.08!HOXC13;;chr16:1429627..1429662,-!p2@UNKL!0.60!10.27!UNKL;;chr10:97889464..97889494,+!p3@ZNF518A!0.60!6.16!ZNF518A;;chr22:29196492..29196503,-!p3@XBP1!0.60!4.96!XBP1;;chr14:75745523..75745537,+!p1@FOS!0.59!423.95!FOS;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.59!35.24!GLIS2;;chr10:94449675..94449694,+!p2@HHEX!0.59!8.90!HHEX;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.76!HOXC4;;chr8:72755987..72756002,-!p7@MSC!0.59!2.91!MSC;;chr3:69915369..69915381,+!p4@MITF!0.59!2.91!MITF;;chr1:151804244..151804310,-!p1@RORC!0.59!2.91!RORC;;chr1:212873200..212873230,-!p5@BATF3!0.59!2.91!BATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.57!41.57!ZC3H12A;;chr7:1570388..1570418,+!p2@MAFK!0.57!6.67!MAFK;;chr15:96875657..96875760,+!p14@NR2F2!0.57!4.96!NR2F2;;chr7:137686824..137686865,-!p2@CREB3L2!0.56!41.06!CREB3L2;;chr6:126240380..126240430,+!p2@NCOA7!0.56!8.04!NCOA7;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.36!SMAD6;;chr3:12329397..12329433,+!p2@PPARG!0.56!7.01!PPARG;;chr7:27135591..27135658,-!p1@HOXA1!0.56!5.82!HOXA1;;chr4:87857474..87857489,+!p7@AFF1!0.56!5.13!AFF1;;chr2:192015750..192015793,-!p2@STAT4!0.56!3.76!STAT4;;chr11:47279248..47279264,+!p3@NR1H3!0.56!3.08!NR1H3;;chr17:17740287..17740307,-!p1@SREBF1!0.55!85.54!SREBF1;;chr8:86089369..86089408,+!p1@E2F5!0.55!8.21!E2F5;;chr4:87857433..87857472,+!p9@AFF1!0.55!5.13!AFF1;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.59!TEAD1;;chr10:114886551..114886601,+!p11@TCF7L2!0.55!2.57!TCF7L2;;chr13:100623375..100623425,-!p1@ZIC5!0.55!2.57!ZIC5;;chr2:122042770..122042785,-!p1@TFCP2L1!0.55!2.57!TFCP2L1;;chr20:42984330..42984364,+!p2@HNF4A!0.55!2.57!HNF4A;;chr1:61547894..61547968,+!p2@NFIA!0.54!8.55!NFIA;;chr17:41623009..41623053,-!p4@ETV4!0.54!4.45!ETV4;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.53!20.87!ZNF410;;chr15:67357924..67357952,+!p2@SMAD3!0.53!20.19!SMAD3;;chr4:87928142..87928165,+!p5@AFF1!0.53!10.09!AFF1;;chr2:71127699..71127744,+!p1@VAX2!0.53!5.65!VAX2;;chr5:172662230..172662241,-!p3@NKX2-5!0.53!2.40!NKX2-5;;chr6:126221034..126221056,+!p13@NCOA7!0.53!2.40!NCOA7;;chr7:101917482..101917507,+!p6@CUX1!0.53!2.40!CUX1;;chr7:1577076..1577095,+!p5@MAFK!0.53!2.40!MAFK;;chr7:73038867..73038878,-!p2@MLXIPL!0.53!2.40!MLXIPL;;chr12:85674018..85674039,+!p3@ALX1!0.53!2.40!ALX1;;chr14:37131058..37131139,+!p1@PAX9!0.53!2.40!PAX9;;chr8:103667935..103667960,-!p1@KLF10!0.52!132.59!KLF10;;chr7:28448965..28448994,+!p2@CREB5!0.52!10.09!CREB5;;chr2:75937794..75937867,-!p2@GCFC2!0.52!5.99!GCFC2;;chr12:3068466..3068495,+!p3@TEAD4!0.52!5.82!TEAD4;;chr10:114710098..114710130,+!p2@TCF7L2!0.51!21.90!TCF7L2;;chr12:80084862..80084884,-!p7@PAWR!0.51!5.47!PAWR;;chr17:41622834..41622883,-!p6@ETV4!0.51!2.91!ETV4;;chr15:76629097..76629120,+!p2@ISL2!0.51!2.57!ISL2;;chr17:36105074..36105086,-!p2@HNF1B!0.51!2.22!HNF1B;;chr5:134369879..134369898,-!p2@PITX1!0.51!2.22!PITX1;;chr6:126102339..126102351,+!p12@NCOA7!0.51!2.22!NCOA7;;chr1:164600166..164600175,+!p47@PBX1!0.51!2.22!PBX1;;chr1:164600184..164600191,+!p38@PBX1!0.51!2.22!PBX1;;chr11:34663913..34663945,+!p6@EHF!0.51!2.22!EHF;;chr12:121416455..121416479,+!p2@HNF1A!0.51!2.22!HNF1A;;chr12:54394059..54394088,+!p3@HOXC9!0.51!2.22!HOXC9;;chr3:69915385..69915438,+!p3@MITF!0.51!2.22!MITF;;chr2:27357479..27357524,-!p1@PREB!0.50!81.27!PREB;;chr2:192015701..192015743,-!p1@STAT4!0.50!3.25!STAT4;;chr5:137801160..137801176,+!p1@EGR1!0.49!280.07!EGR1;;chr7:1570322..1570360,+!p1@MAFK!0.49!23.44!MAFK;;chr12:80084333..80084380,-!p4@PAWR!0.49!13.17!PAWR;;chr8:72756667..72756736,-!p2@MSC!0.49!3.76!MSC;;chr17:46688334..46688385,-!p1@HOXB7!0.49!3.42!HOXB7;;chr15:80696703..80696754,+!p1@ARNT2!0.49!3.08!ARNT2;;chr12:80084768..80084821,-!p2@PAWR!0.48!18.48!PAWR;;chr12:80084303..80084332,-!p1@PAWR!0.48!15.91!PAWR;;chr15:41913690..41913753,+!p2@MGA!0.48!5.99!MGA;;chr16:1429010..1429038,-!p5@UNKL!0.48!2.05!UNKL;;chr17:46690839..46690884,-!p1@HOXB8!0.48!2.05!HOXB8;;chr17:46806067..46806097,-!p1@HOXB13!0.48!2.05!HOXB13;;chr17:48045917..48045977,+!p1@DLX4!0.48!2.05!DLX4;;chr7:115608357..115608372,-!p3@TFEC!0.48!2.05!TFEC;;chr8:55370487..55370503,+!p1@SOX17!0.48!2.05!SOX17;;chr3:39196117..39196139,-!p4@CSRNP1!0.48!2.05!CSRNP1;;chr9:2062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+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lung%2520adenocarcinoma%2520cell%2520line%253aA549.CNhs11275.10499-107C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10499-107C4
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100018
+|is_a=EFO:0002091;;FF:0000210;;FF:0100018
+|is_obsolete=
+|library_id=CNhs11275
+|library_id_phase_based=2:CNhs11275
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10499
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10499
 |name=lung adenocarcinoma cell line:A549
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11275,LSID759,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=107
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=57.2335
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB0098
 |sample_cell_line=A549
@@ Line 77: / Line 99: @@
 |sample_tissue=lung
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10499-107C4;search_select_hide=table117:FF:10499-107C4
 }}

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FF:10499-107C4: Difference between revisions

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Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0