FF:10486-107A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004799 | ||
|accession_numbers=CAGE;DRX008017;DRR008889;DRZ000314;DRZ001699 | |accession_numbers=CAGE;DRX008017;DRR008889;DRZ000314;DRZ001699;DRZ011664;DRZ013049 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.00!99.66!EHF;;chr7:101917407..101917443,+!p3@CUX1!1.73!52.56!CUX1;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.87!ELF3;;chr15:67418119..67418162,+!p5@SMAD3!1.68!52.40!SMAD3;;chr8:102504651..102504683,+!p1@GRHL2!1.54!33.54!GRHL2;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!49.03!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!1.50!30.89!CUX1;;chr15:67418047..67418093,+!p4@SMAD3!1.49!37.55!SMAD3;;chr7:101917482..101917507,+!p6@CUX1!1.42!25.36!CUX1;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.04!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.27!19.98!PPARG;;chr15:67418099..67418118,+!p16@SMAD3!1.27!17.41!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.25!429.93!FOSL1;;chr1:158985493..158985535,+!p4@IFI16!1.23!24.47!IFI16;;chr2:238592039..238592054,+!p4@LRRFIP1!1.20!14.84!LRRFIP1;;chr15:67418177..67418204,+!p9@SMAD3!1.08!11.15!SMAD3;;chr11:65667884..65667895,-!p2@FOSL1!1.03!38.28!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!100.14!SOX9;;chr6:10412392..10412409,-!p4@TFAP2A!1.02!10.75!TFAP2A;;chr12:80084737..80084763,-!p3@PAWR!1.00!34.66!PAWR;;chr14:38064429..38064486,-!p1@FOXA1!1.00!8.91!FOXA1;;chr12:26277956..26277980,-!p1@BHLHE41!0.99!31.86!BHLHE41;;chr3:168864315..168864339,-!p2@MECOM!0.97!13.80!MECOM;;chr21:36421535..36421610,-!p2@RUNX1!0.92!27.12!RUNX1;;chr14:37131058..37131139,+!p1@PAX9!0.91!7.06!PAX9;;chr8:102504979..102505010,+!p2@GRHL2!0.88!6.58!GRHL2;;chr7:101917509..101917520,+!p9@CUX1!0.86!6.18!CUX1;;chr3:114343826..114343869,-!p4@ZBTB20!0.85!12.68!ZBTB20;;chr15:41913690..41913753,+!p2@MGA!0.84!14.84!MGA;;chr5:134369905..134369972,-!p1@PITX1!0.84!9.47!PITX1;;chr1:209979467..209979494,-!p1@IRF6!0.82!6.34!IRF6;;chr7:102985288..102985310,-!p2@DNAJC2!0.81!13.48!DNAJC2;;chr3:169381420..169381535,-!p1@MECOM!0.81!6.50!MECOM;;chr6:10412600..10412637,-!p1@TFAP2A!0.80!9.23!TFAP2A;;chr19:45971246..45971265,+!p1@FOSB!0.79!105.20!FOSB;;chr2:46524897..46524911,+!p2@EPAS1!0.79!15.33!EPAS1;;chr4:103423079..103423112,+!p4@NFKB1!0.79!5.14!NFKB1;;chr11:34642656..34642667,+!p2@EHF!0.79!5.14!EHF;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.86!NCOA4;;chr5:137804484..137804498,+!p2@EGR1!0.77!21.18!EGR1;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!13.96!ARNTL2;;chr13:41593425..41593480,-!p1@ELF1!0.76!33.06!ELF1;;chr6:28048343..28048354,+!p1@ZNF165!0.76!4.81!ZNF165;;chr3:69915385..69915438,+!p3@MITF!0.75!4.57!MITF;;chr11:65479462..65479517,+!p2@KAT5!0.74!20.06!KAT5;;chr1:43148855..43148908,+!p4@YBX1!0.74!7.46!YBX1;;chr14:75988771..75988826,+!p1@BATF!0.74!6.18!BATF;;chr1:158985469..158985489,+!p7@IFI16!0.74!5.46!IFI16;;chr7:27190547..27190591,-!p1@HOXA6!0.73!4.33!HOXA6;;chr9:110252035..110252057,-!p1@KLF4!0.72!77.35!KLF4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.46!TFAP2C;;chr7:17338266..17338282,+!p1@AHR!0.69!47.66!AHR;;chr5:124084493..124084524,-!p2@ZNF608!0.69!9.63!ZNF608;;chr12:26277929..26277955,-!p3@BHLHE41!0.69!5.86!BHLHE41;;chr15:71184890..71184909,-!p3@THAP10!0.69!5.22!THAP10;;chr12:124457746..124457828,+!p1@ZNF664!0.68!164.98!ZNF664;;chr4:56412978..56413003,-!p1@CLOCK!0.68!10.11!CLOCK;;chr15:96875657..96875760,+!p14@NR2F2!0.68!6.74!NR2F2;;chr15:71184837..71184877,-!p2@THAP10!0.67!5.30!THAP10;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr7:102985160..102985273,-!p1@DNAJC2!0.66!103.75!DNAJC2;;chr12:7079780..7079791,-!p2@PHB2!0.65!20.86!PHB2;;chr3:114343768..114343822,-!p1@ZBTB20!0.65!17.49!ZBTB20;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.01!SIX1;;chr12:10875351..10875422,-!p4@CSDA!0.65!7.30!CSDA;;chr12:26277817..26277863,-!p2@BHLHE41!0.65!4.97!BHLHE41;;chr6:34204921..34204939,+!p3@HMGA1!0.64!120.20!HMGA1;;chr15:41952591..41952672,+!p1@MGA!0.64!53.20!MGA;;chr11:67007548..67007610,+!p3@KDM2A!0.64!29.45!KDM2A;;chr7:99156393..99156433,+!p6@ZNF655!0.64!8.51!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.63!15.65!MBNL3;;chr6:126102292..126102329,+!p3@NCOA7!0.63!12.28!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!0.63!3.29!PITX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.63!3.29!TFAP2A;;chr12:57914286..57914304,-!p1@DDIT3!0.62!138.10!DDIT3;;chr6:126240380..126240430,+!p2@NCOA7!0.62!9.23!NCOA7;;chr5:137804405..137804444,+!p3@EGR1!0.62!3.93!EGR1;;chr11:65668011..65668020,-!p3@FOSL1!0.62!3.21!FOSL1;;chr18:55102598..55102623,+!p1@ONECUT2!0.62!3.21!ONECUT2;;chr3:169381183..169381205,-!p4@MECOM!0.62!3.21!MECOM;;chr12:54332608..54332636,+!p1@HOXC13!0.62!3.13!HOXC13;;chr6:21593973..21593988,+!p1@SOX4!0.61!132.56!SOX4;;chr12:27485823..27485868,+!p2@ARNTL2!0.61!14.44!ARNTL2;;chr16:54320646..54320672,-!p2@IRX3!0.61!5.06!IRX3;;chr7:99214559..99214601,+!p1@ZNF498!0.60!44.61!ZNF498;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.69!EGR1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.59!124.21!ZKSCAN1;;chr11:128392273..128392308,-!p2@ETS1!0.59!14.68!ETS1;;chr12:66218255..66218304,+!p3@HMGA2!0.59!8.91!HMGA2;;chr7:86781858..86781879,+!p3@DMTF1!0.59!5.14!DMTF1;;chr17:38256822..38256851,-!p1@NR1D1!0.58!26.96!NR1D1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.57!HIF1A;;chr7:92076740..92076834,+!p1@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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.00!99.66!EHF;;chr7:101917407..101917443,+!p3@CUX1!1.73!52.56!CUX1;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.87!ELF3;;chr15:67418119..67418162,+!p5@SMAD3!1.68!52.40!SMAD3;;chr8:102504651..102504683,+!p1@GRHL2!1.54!33.54!GRHL2;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!49.03!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!1.50!30.89!CUX1;;chr15:67418047..67418093,+!p4@SMAD3!1.49!37.55!SMAD3;;chr7:101917482..101917507,+!p6@CUX1!1.42!25.36!CUX1;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.04!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.27!19.98!PPARG;;chr15:67418099..67418118,+!p16@SMAD3!1.27!17.41!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.25!429.93!FOSL1;;chr1:158985493..158985535,+!p4@IFI16!1.23!24.47!IFI16;;chr2:238592039..238592054,+!p4@LRRFIP1!1.20!14.84!LRRFIP1;;chr15:67418177..67418204,+!p9@SMAD3!1.08!11.15!SMAD3;;chr11:65667884..65667895,-!p2@FOSL1!1.03!38.28!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!100.14!SOX9;;chr6:10412392..10412409,-!p4@TFAP2A!1.02!10.75!TFAP2A;;chr12:80084737..80084763,-!p3@PAWR!1.00!34.66!PAWR;;chr14:38064429..38064486,-!p1@FOXA1!1.00!8.91!FOXA1;;chr12:26277956..26277980,-!p1@BHLHE41!0.99!31.86!BHLHE41;;chr3:168864315..168864339,-!p2@MECOM!0.97!13.80!MECOM;;chr21:36421535..36421610,-!p2@RUNX1!0.92!27.12!RUNX1;;chr14:37131058..37131139,+!p1@PAX9!0.91!7.06!PAX9;;chr8:102504979..102505010,+!p2@GRHL2!0.88!6.58!GRHL2;;chr7:101917509..101917520,+!p9@CUX1!0.86!6.18!CUX1;;chr3:114343826..114343869,-!p4@ZBTB20!0.85!12.68!ZBTB20;;chr15:41913690..41913753,+!p2@MGA!0.84!14.84!MGA;;chr5:134369905..134369972,-!p1@PITX1!0.84!9.47!PITX1;;chr1:209979467..209979494,-!p1@IRF6!0.82!6.34!IRF6;;chr7:102985288..102985310,-!p2@DNAJC2!0.81!13.48!DNAJC2;;chr3:169381420..169381535,-!p1@MECOM!0.81!6.50!MECOM;;chr6:10412600..10412637,-!p1@TFAP2A!0.80!9.23!TFAP2A;;chr19:45971246..45971265,+!p1@FOSB!0.79!105.20!FOSB;;chr2:46524897..46524911,+!p2@EPAS1!0.79!15.33!EPAS1;;chr4:103423079..103423112,+!p4@NFKB1!0.79!5.14!NFKB1;;chr11:34642656..34642667,+!p2@EHF!0.79!5.14!EHF;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.86!NCOA4;;chr5:137804484..137804498,+!p2@EGR1!0.77!21.18!EGR1;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!13.96!ARNTL2;;chr13:41593425..41593480,-!p1@ELF1!0.76!33.06!ELF1;;chr6:28048343..28048354,+!p1@ZNF165!0.76!4.81!ZNF165;;chr3:69915385..69915438,+!p3@MITF!0.75!4.57!MITF;;chr11:65479462..65479517,+!p2@KAT5!0.74!20.06!KAT5;;chr1:43148855..43148908,+!p4@YBX1!0.74!7.46!YBX1;;chr14:75988771..75988826,+!p1@BATF!0.74!6.18!BATF;;chr1:158985469..158985489,+!p7@IFI16!0.74!5.46!IFI16;;chr7:27190547..27190591,-!p1@HOXA6!0.73!4.33!HOXA6;;chr9:110252035..110252057,-!p1@KLF4!0.72!77.35!KLF4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.46!TFAP2C;;chr7:17338266..17338282,+!p1@AHR!0.69!47.66!AHR;;chr5:124084493..124084524,-!p2@ZNF608!0.69!9.63!ZNF608;;chr12:26277929..26277955,-!p3@BHLHE41!0.69!5.86!BHLHE41;;chr15:71184890..71184909,-!p3@THAP10!0.69!5.22!THAP10;;chr12:124457746..124457828,+!p1@ZNF664!0.68!164.98!ZNF664;;chr4:56412978..56413003,-!p1@CLOCK!0.68!10.11!CLOCK;;chr15:96875657..96875760,+!p14@NR2F2!0.68!6.74!NR2F2;;chr15:71184837..71184877,-!p2@THAP10!0.67!5.30!THAP10;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr7:102985160..102985273,-!p1@DNAJC2!0.66!103.75!DNAJC2;;chr12:7079780..7079791,-!p2@PHB2!0.65!20.86!PHB2;;chr3:114343768..114343822,-!p1@ZBTB20!0.65!17.49!ZBTB20;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.01!SIX1;;chr12:10875351..10875422,-!p4@CSDA!0.65!7.30!CSDA;;chr12:26277817..26277863,-!p2@BHLHE41!0.65!4.97!BHLHE41;;chr6:34204921..34204939,+!p3@HMGA1!0.64!120.20!HMGA1;;chr15:41952591..41952672,+!p1@MGA!0.64!53.20!MGA;;chr11:67007548..67007610,+!p3@KDM2A!0.64!29.45!KDM2A;;chr7:99156393..99156433,+!p6@ZNF655!0.64!8.51!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.63!15.65!MBNL3;;chr6:126102292..126102329,+!p3@NCOA7!0.63!12.28!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!0.63!3.29!PITX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.63!3.29!TFAP2A;;chr12:57914286..57914304,-!p1@DDIT3!0.62!138.10!DDIT3;;chr6:126240380..126240430,+!p2@NCOA7!0.62!9.23!NCOA7;;chr5:137804405..137804444,+!p3@EGR1!0.62!3.93!EGR1;;chr11:65668011..65668020,-!p3@FOSL1!0.62!3.21!FOSL1;;chr18:55102598..55102623,+!p1@ONECUT2!0.62!3.21!ONECUT2;;chr3:169381183..169381205,-!p4@MECOM!0.62!3.21!MECOM;;chr12:54332608..54332636,+!p1@HOXC13!0.62!3.13!HOXC13;;chr6:21593973..21593988,+!p1@SOX4!0.61!132.56!SOX4;;chr12:27485823..27485868,+!p2@ARNTL2!0.61!14.44!ARNTL2;;chr16:54320646..54320672,-!p2@IRX3!0.61!5.06!IRX3;;chr7:99214559..99214601,+!p1@ZNF498!0.60!44.61!ZNF498;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.69!EGR1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.59!124.21!ZKSCAN1;;chr11:128392273..128392308,-!p2@ETS1!0.59!14.68!ETS1;;chr12:66218255..66218304,+!p3@HMGA2!0.59!8.91!HMGA2;;chr7:86781858..86781879,+!p3@DMTF1!0.59!5.14!DMTF1;;chr17:38256822..38256851,-!p1@NR1D1!0.58!26.96!NR1D1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.57!HIF1A;;chr7:92076740..92076834,+!p1@GATAD1!0.57!84.57!GATAD1;;chr15:41913412..41913456,+!p3@MGA!0.57!6.66!MGA;;chr20:18038521..18038571,-!p1@OVOL2!0.57!2.73!OVOL2;;chr7:17338324..17338341,+!p3@AHR!0.56!10.43!AHR;;chr11:67007611..67007622,+!p6@KDM2A!0.56!3.77!KDM2A;;chr5:2751762..2751784,-!p1@IRX2!0.56!2.65!IRX2;;chr2:214015343..214015366,-!p3@IKZF2!0.56!2.65!IKZF2;;chr14:62162224..62162254,+!p1@HIF1A!0.55!472.54!HIF1A;;chr5:137801160..137801176,+!p1@EGR1!0.55!324.09!EGR1;;chr7:99156249..99156311,+!p1@ZNF655!0.55!72.22!ZNF655;;chr6:15246200..15246214,+!p2@JARID2!0.55!8.26!JARID2;;chr8:128750175..128750201,+!p8@MYC!0.55!4.97!MYC;;chr12:27485889..27485900,+!p4@ARNTL2!0.55!3.21!ARNTL2;;chr7:99156011..99156036,+!p7@ZNF655!0.55!3.13!ZNF655;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.57!HOXA3;;chr12:27485785..27485816,+!p1@ARNTL2!0.54!21.50!ARNTL2;;chr2:95831389..95831432,-!p1@ZNF514!0.54!13.24!ZNF514;;chr3:168865194..168865245,-!p3@MECOM!0.54!3.37!MECOM;;chr7:99679324..99679368,-!p1@ZNF3!0.53!42.93!ZNF3;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.53!33.70!TCF20;;chr7:99156314..99156372,+!p4@ZNF655!0.53!9.63!ZNF655;;chr6:31515311..31515330,+!p3@NFKBIL1!0.53!3.69!NFKBIL1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.52!158.16!NFKBIZ;;chr14:62162258..62162269,+!p2@HIF1A!0.52!28.73!HIF1A;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.86!IRX3;;chr5:124084466..124084484,-!p6@ZNF608!0.52!2.33!ZNF608;;chr3:69915369..69915381,+!p4@MITF!0.52!2.33!MITF;;chr7:26191809..26191890,+!p1@NFE2L3!0.51!14.04!NFE2L3;;chr7:99156212..99156244,+!p3@ZNF655!0.51!10.75!ZNF655;;chrX:101186981..101187030,-!p1@ZMAT1!0.51!8.99!ZMAT1;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.51!8.02!ZKSCAN1;;chr8:145159447..145159458,+!p4@MAF1!0.51!6.34!MAF1;;chr14:64970427..64970450,-!p5@ZBTB25!0.51!4.49!ZBTB25;;chr5:134369222..134369237,-!p8@PITX1!0.51!2.25!PITX1;;chr19:36705998..36706021,+!p2@ZNF146!0.50!41.40!ZNF146;;chr6:21597514..21597578,+!p4@SOX4!0.50!4.25!SOX4;;chr8:102504932..102504952,+!p4@GRHL2!0.50!2.17!GRHL2;;chr10:135122868..135122893,+!p3@ZNF511!0.50!2.17!ZNF511;;chr7:101459263..101459310,+!p1@CUX1!0.49!165.70!CUX1;;chr11:67007477..67007493,+!p2@KDM2A!0.49!23.27!KDM2A;;chr7:99156434..99156510,+!p2@ZNF655!0.49!16.45!ZNF655;;chr12:66218598..66218645,+!p2@HMGA2!0.49!12.52!HMGA2;;chr19:45579725..45579743,-!p1@ZNF296!0.49!11.96!ZNF296;;chr17:46682321..46682362,-!p1@HOXB6!0.49!2.09!HOXB6;;chr10:60145155..60145206,+!p1@TFAM!0.48!119.96!TFAM;;chr7:17338239..17338262,+!p2@AHR!0.48!19.98!AHR;;chr18:19749541..19749557,+!p1@GATA6!0.48!8.10!GATA6;;chr8:123793988..123794016,+!p1@ZHX2!0.48!4.17!ZHX2;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.48!3.21!ZNF497;;chr19:50431973..50431998,+!p5@ATF5!0.48!2.81!ATF5;;chr20:22565370..22565388,-!p2@FOXA2!0.48!2.01!FOXA2;;chr3:181429704..181429722,+!p1@SOX2!0.48!2.01!SOX2;;chr17:17740287..17740307,-!p1@SREBF1!0.47!70.77!SREBF1;;chr19:36706024..36706049,+!p1@ZNF146!0.47!48.14!ZNF146;;chr10:45496346..45496409,+!p1@ZNF22!0.47!37.71!ZNF22;;chr3:141747459..141747475,-!p1@TFDP2!0.47!21.75!TFDP2;;chr11:129765427..129765492,-!p1@NFRKB!0.47!20.86!NFRKB;;chr12:48298785..48298828,-!p1@VDR!0.47!13.56!VDR;;chr15:57025759..57025811,-!p2@ZNF280D!0.47!13.40!ZNF280D;;chr8:57123815..57123867,-!p1@PLAG1!0.47!10.35!PLAG1;;chr15:61521417..61521460,-!p2@RORA!0.47!5.38!RORA;;chr7:74072256..74072279,+!p3@GTF2I!0.47!4.81!GTF2I;;chr3:23986876..23986885,+!p4@NR1D2!0.47!3.05!NR1D2;;chr11:128392085..128392232,-!p1@ETS1!0.46!88.99!ETS1;;chr19:44716678..44716732,+!p1@ZNF227!0.46!17.65!ZNF227;;chr12:6798616..6798684,-!p2@ZNF384!0.46!17.33!ZNF384;;chr10:97889784..97889827,+!p1@ZNF518A!0.46!12.12!ZNF518A;;chr7:99156145..99156207,+!p5@ZNF655!0.46!8.18!ZNF655;;chr3:107241882..107241904,+!p2@BBX!0.46!5.86!BBX;;chr13:45011349..45011391,-!p4@TSC22D1!0.46!5.78!TSC22D1;;chr14:64970670..64970712,-!p3@ZBTB25!0.46!4.97!ZBTB25;;chr6:21597600..21597664,+!p3@SOX4!0.46!3.69!SOX4;;chr5:16465902..16465917,-!p1@ZNF622!0.45!60.74!ZNF622;;chr11:128392309..128392350,-!p3@ETS1!0.45!5.38!ETS1;;chr7:99070527..99070542,+!p2@ZNF789!0.45!4.97!ZNF789;;chr6:126240442..126240459,+!p4@NCOA7!0.45!2.57!NCOA7;;chr10:135122906..135122921,+!p4@ZNF511!0.45!1.85!ZNF511;;chr14:75745523..75745537,+!p1@FOS!0.44!305.16!FOS;;chr11:65101305..65101359,+!p1@DPF2!0.44!98.86!DPF2;;chr10:104154246..104154347,+!p3@NFKB2!0.44!14.68!NFKB2;;chr3:23986824..23986848,+!p2@NR1D2!0.44!13.48!NR1D2;;chr10:96122645..96122675,-!p2@NOC3L!0.44!11.31!NOC3L;;chr7:86781916..86781963,+!p2@DMTF1!0.44!10.35!DMTF1;;chr1:43148792..43148849,+!p2@YBX1!0.44!8.83!YBX1;;chr6:21597499..21597513,+!p16@SOX4!0.44!1.77!SOX4;;chr12:69753448..69753577,+!p1@YEATS4!0.43!47.74!YEATS4;;chr7:99097863..99097936,-!p1@ZNF394!0.43!24.07!ZNF394;;chr16:68564003..68564050,+!p2@ZFP90!0.43!5.86!ZFP90;;chr11:67007445..67007459,+!p4@KDM2A!0.43!3.45!KDM2A;;chr19:33865009..33865090,+!p3@CEBPG!0.43!2.57!CEBPG;;chr8:128747757..128747800,+!p7@MYC!0.43!2.57!MYC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.43!1.69!HOXC5;;chr14:100705200..100705237,+!p3@YY1!0.42!17.97!YY1;;chr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784;;chr5:76383017..76383068,-!p1@ZBED3!0.16!4.01!ZBED3;;chr10:44101850..44101896,+!p1@ZNF485!0.16!3.29!ZNF485;;chr19:36134528..36134563,+!p1@ETV2!0.16!2.97!ETV2;;chr9:109625401..109625458,+!p1@ZNF462!0.16!2.65!ZNF462;;chr11:47270436..47270464,+!p2@NR1H3!0.16!1.93!NR1H3;;chr16:4322948..4322975,-!p3@TFAP4!0.16!1.77!TFAP4;;chr14:100705587..100705600,+!p5@YY1!0.16!1.60!YY1;;chr12:498671..498693,-!p4@KDM5A!0.16!1.44!KDM5A;;chr14:61191049..61191080,-!p2@SIX4!0.16!1.44!SIX4;;chr14:64970451..64970473,-!p6@ZBTB25!0.16!1.28!ZBTB25;;chr1:204042275..204042286,+!p4@SOX13!0.16!1.20!SOX13;;chr15:64752927..64752950,+!p3@ZNF609!0.16!1.12!ZNF609;;chr13:46549840..46549882,-!p4@ZC3H13!0.16!1.04!ZC3H13;;chr10:43134047..43134079,-!p3@ZNF33B!0.16!0.96!ZNF33B;;chrX:107018969..107019024,-!p6@TSC22D3!0.16!0.96!TSC22D3;;chr1:27023752..27023799,+!p4@ARID1A!0.16!0.88!ARID1A;;chr19:50432132..50432217,+!p2@ATF5!0.16!0.72!ATF5;;chr5:92919100..92919135,+!p3@NR2F1!0.16!0.72!NR2F1;;chr5:124082580..124082603,-!p4@ZNF608!0.16!0.64!ZNF608;;chr2:27805971..27805981,+!p3@ZNF512!0.16!0.64!ZNF512;;chr8:80680078..80680101,-!p3@HEY1!0.16!0.56!HEY1;;chr10:51565188..51565236,+!p1@NCOA4!0.15!95.33!NCOA4;;chr7:74072021..74072119,+!p1@GTF2I!0.15!32.82!GTF2I;;chr4:4291861..4291913,-!p1@LYAR!0.15!28.89!LYAR;;chr5:132299290..132299310,-!p2@AFF4!0.15!24.31!AFF4;;chr5:138629349..138629386,+!p3@MATR3!0.15!20.06!MATR3;;chr17:47439437..47439533,-!p1@ZNF652!0.15!9.79!ZNF652;;chr19:21688387..21688432,+!p1@ZNF429!0.15!7.06!ZNF429;;chr17:36861393..36861439,+!p2@MLLT6!0.15!6.90!MLLT6;;chr19:44952635..44952668,-!p1@ZNF229!0.15!5.70!ZNF229;;chr7:64363638..64363667,+!p1@ZNF273!0.15!5.62!ZNF273;;chr3:129158854..129158883,-!p3@MBD4!0.15!5.62!MBD4;;chr11:62369352..62369373,-!p5@MTA2!0.15!4.17!MTA2;;chr19:57751980..57752019,+!p2@ZNF805!0.15!3.53!ZNF805;;chr1:8877735..8877760,-!p8@RERE!0.15!2.65!RERE;;chr2:172967621..172967637,-!p1@DLX2!0.15!2.65!DLX2;;chr1:41174988..41175047,+!p4@NFYC!0.15!2.57!NFYC;;chr1:33004734..33004807,+!p2@ZBTB8A!0.15!1.52!ZBTB8A;;chrX:101975619..101975641,+!p2@BHLHB9!0.15!1.44!BHLHB9;;chr12:3068501..3068515,+!p4@TEAD4!0.15!1.36!TEAD4;;chr12:133707021..133707071,-!p2@ZNF891!0.15!1.28!ZNF891;;chr2:214016314..214016343,-!p2@IKZF2!0.15!1.28!IKZF2;;chr17:79885633..79885645,-!p4@MAFG!0.15!1.28!MAFG;;chr18:74072572..74072588,-!p2@ZNF516!0.15!1.20!ZNF516;;chr21:36260295..36260310,-!p3@RUNX1!0.15!1.20!RUNX1;;chr11:16759983..16760029,-!p2@SOX6!0.15!1.12!SOX6;;chr8:145159277..145159282,+!p7@MAF1!0.15!1.12!MAF1;;chr10:31320840..31320859,-!p4@ZNF438!0.15!0.96!ZNF438;;chr20:46130727..46130734,+!p4@NCOA3!0.15!0.88!NCOA3;;chr15:42783258..42783270,-!p4@ZFP106!0.15!0.88!ZFP106;;chr7:74072288..74072299,+!p7@GTF2I!0.15!0.80!GTF2I;;chr6:126240356..126240379,+!p7@NCOA7!0.15!0.72!NCOA7;;chr17:38465441..38465481,+!p6@RARA!0.15!0.72!RARA;;chr14:99738138..99738163,-!p1@BCL11B!0.15!0.40!BCL11B;;chr15:57025732..57025743,-!p6@ZNF280D!0.15!0.40!ZNF280D;;chr16:29819122..29819141,+!p34@MAZ!0.15!0.40!MAZ;;chr17:40540591..40540600,-!p3@STAT3!0.15!0.40!STAT3;;chr17:45810594..45810608,+!p1@TBX21!0.15!0.40!TBX21;;chr17:8027418..8027432,-!p1@HES7!0.15!0.40!HES7;;chr19:16435423..16435484,+!p5@KLF2!0.15!0.40!KLF2;;chr19:1863887..1863918,-!p6@KLF16!0.15!0.40!KLF16;;chr19:45908278..45908282,-!p5@PPP1R13L!0.15!0.40!PPP1R13L;;chr1:158985553..158985574,+!p14@IFI16!0.15!0.40!IFI16;;chr1:209979411..209979433,-!p2@IRF6!0.15!0.40!IRF6;;chr20:23342623..23342652,+!p2@GZF1!0.15!0.40!GZF1;;chr21:38071430..38071456,+!p1@SIM2!0.15!0.40!SIM2;;chr9:14314476..14314487,-!p9@NFIB!0.15!0.40!NFIB;;chr9:126773880..126773895,+!p2@LHX2!0.15!0.40!LHX2;;chr10:31607335..31607354,+!p5@ZEB1!0.15!0.40!ZEB1;;chr11:128392258..128392264,-!p7@ETS1!0.15!0.40!ETS1;;chr12:124496534..124496544,+!p6@ZNF664!0.15!0.40!ZNF664;;chr12:26277798..26277809,-!p5@BHLHE41!0.15!0.40!BHLHE41;;chr12:53774025..53774031,+!p10@SP1!0.15!0.40!SP1;;chr12:66218037..66218042,+!p18@HMGA2!0.15!0.40!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.15!0.40!HMGA2;;chr14:62214151..62214164,+!p11@HIF1A!0.15!0.40!HIF1A;;chr7:100076673..100076682,-!p7@TSC22D4!0.15!0.40!TSC22D4;;chr7:99680302..99680329,-!p5@ZNF3!0.15!0.40!ZNF3;;chr8:128750164..128750173,+!p24@MYC!0.15!0.40!MYC;;chr9:100615499..100615519,+!p1@FOXE1!0.15!0.40!FOXE1;;chr21:43428446..43428452,-!p2@ZNF295!0.15!0.40!ZNF295;;chr2:157189617..157189667,-!p4@NR4A2!0.15!0.40!NR4A2;;chr2:70166128..70166141,+!p9@MXD1!0.15!0.40!MXD1;;chr2:73520667..73520683,-!p1@EGR4!0.15!0.40!EGR4;;chr3:101575858..101575869,+!p13@NFKBIZ!0.15!0.40!NFKBIZ;;chr3:168864427..168864464,-!p19@MECOM!0.15!0.40!MECOM;;chr3:18465604..18465618,-!p9@SATB1!0.15!0.40!SATB1;;chr4:149363662..149363688,-!p6@NR3C2!0.15!0.40!NR3C2;;chr4:47916225..47916234,-!p5@NFXL1!0.15!0.40!NFXL1;;chr5:149380256..149380343,+!p1@HMGXB3!0.14!36.27!HMGXB3;;chr20:44718538..44718612,-!p1@NCOA5!0.14!33.86!NCOA5;;chr7:148892653..148892729,+!p1@ZNF282!0.14!17.65!ZNF282;;chr12:122516646..122516668,+!p1@MLXIP!0.14!16.13!MLXIP;;chr12:51566849..51566927,-!p1@TFCP2!0.14!10.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| ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10486-107A9 | |id=FF:10486-107A9 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0103001 | |is_a=EFO:0002091;;FF:0000210;;FF:0103001 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11273 | |library_id=CNhs11273 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11273 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10486 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10486 | |||
|name=squamous cell lung carcinoma cell line:EBC-1 | |name=squamous cell lung carcinoma cell line:EBC-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11273,LSID758,release008,COMPLETED | |profile_hcage=CNhs11273,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 90: | Line 100: | ||
|top_motifs=ELK1,4_GABP{A,B1}:2.40287911666;bHLH_family:1.93744048766;SNAI1..3:1.78488528102;ZEB1:1.65167713154;CRX:1.43491339352;ARID5B:1.41507089406;FOX{I1,J2}:1.39782672364;FOXQ1:1.39126680145;FOXN1:1.37817321783;MYOD1:1.29651393549;PPARG:1.23906263098;AHR_ARNT_ARNT2:1.14670345638;NRF1:1.12388735175;NKX6-1,2:1.12050913446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05470132832;FOXD3:0.959529809605;ZBTB16:0.949405931637;PITX1..3:0.894788508273;HIF1A:0.888999135481;CDC5L:0.844029830858;FOXA2:0.826833658386;TEF:0.791693223667;ONECUT1,2:0.776755860688;ADNP_IRX_SIX_ZHX:0.71934898024;SREBF1,2:0.718833343884;ELF1,2,4:0.692528625664;NFE2L2:0.682674363492;YY1:0.66815015367;RFX2..5_RFXANK_RFXAP:0.661821958496;FOXM1:0.631503188704;RFX1:0.615824070398;POU1F1:0.614665083288;T:0.602659996485;NFE2:0.584014552702;FOXP1:0.567542029433;HOXA9_MEIS1:0.553329672471;FOS_FOS{B,L1}_JUN{B,D}:0.488333210687;VSX1,2:0.479054153106;NFY{A,B,C}:0.472817691946;BACH2:0.472391615949;ZNF143:0.449861740209;DBP:0.378197699903;FOSL2:0.361484413544;TOPORS:0.359010856587;FOXP3:0.358345982732;CDX1,2,4:0.353493204388;LHX3,4:0.344606107903;RORA:0.339738518262;HAND1,2:0.336919816881;ATF5_CREB3:0.334828475407;E2F1..5:0.298800342858;TBX4,5:0.29655627572;PDX1:0.296240117962;TFDP1:0.288511488304;ATF4:0.28084087843;TEAD1:0.280628546189;LMO2:0.276831189595;TLX2:0.248554581984;CREB1:0.227154324793;IKZF2:0.224268834694;IKZF1:0.203880511446;OCT4_SOX2{dimer}:0.180049322715;HMGA1,2:0.173754653282;NFIL3:0.161333808256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.146258190033;HSF1,2:0.138383234104;EN1,2:0.135750295448;NR6A1:0.126332629884;EVI1:0.121877255889;POU6F1:0.093745684416;PAX2:0.0813545094923;ATF2:0.0730932196986;SOX2:0.0632436712158;HOX{A4,D4}:0.055714445126;NFIX:0.0317444517799;HBP1_HMGB_SSRP1_UBTF:0.0292596978672;HNF1A:0.0209183655707;NANOG:0.0172106238928;XBP1:0.0124116991552;FOX{D1,D2}:0.00959223592182;FOX{F1,F2,J1}:0.00700453621171;ATF6:-0.00879130257769;FOXL1:-0.0179320619564;ALX1:-0.0258073940013;JUN:-0.0359135798467;ESR1:-0.0406781009088;ESRRA:-0.0461393782856;PAX8:-0.0481372417654;HLF:-0.0596357336754;RXRA_VDR{dimer}:-0.0635112644592;NKX3-1:-0.0741462850818;CEBPA,B_DDIT3:-0.0745560800492;NFKB1_REL_RELA:-0.0751294074682;IRF1,2:-0.0781156041732;NKX2-2,8:-0.0861457746638;MYB:-0.089599036365;CUX2:-0.0914419213715;LEF1_TCF7_TCF7L1,2:-0.0916942634375;NKX2-1,4:-0.100463624631;HOX{A6,A7,B6,B7}:-0.102413025477;PBX1:-0.118357608049;IRF7:-0.120114805459;TP53:-0.134740999596;BPTF:-0.141007405648;SOX{8,9,10}:-0.14154684747;MED-1{core}:-0.143230042779;RBPJ:-0.149301271848;FOXO1,3,4:-0.157317813588;GATA6:-0.158203149994;NR5A1,2:-0.162706593832;GLI1..3:-0.179824399915;SOX17:-0.189178861766;AIRE:-0.210793914178;DMAP1_NCOR{1,2}_SMARC:-0.210817127875;HNF4A_NR2F1,2:-0.215376999772;SOX5:-0.223296284119;NR1H4:-0.233612818361;NKX3-2:-0.267632029153;AR:-0.279948306687;TAL1_TCF{3,4,12}:-0.290538103805;ZBTB6:-0.297204435691;GFI1:-0.303312692931;ETS1,2:-0.332094554327;MYBL2:-0.334657920239;KLF4:-0.341138990585;REST:-0.342462059903;NKX2-3_NKX2-5:-0.360722589067;BREu{core}:-0.363147476122;ZFP161:-0.368939733846;STAT5{A,B}:-0.374930669083;PRRX1,2:-0.37915881117;SPI1:-0.395130758598;RUNX1..3:-0.409212496049;PAX6:-0.425948925495;SPIB:-0.444888682474;STAT2,4,6:-0.451325687863;PAX5:-0.457087525497;MTE{core}:-0.461788027059;HOX{A5,B5}:-0.463335840812;UFEwm:-0.490550233223;MEF2{A,B,C,D}:-0.491987831484;TLX1..3_NFIC{dimer}:-0.494140119074;EP300:-0.519371051075;ALX4:-0.544967820336;STAT1,3:-0.561586775433;RXR{A,B,G}:-0.571017774926;NHLH1,2:-0.586627272754;ZNF384:-0.591253231041;TFCP2:-0.602595519555;PAX4:-0.60642005977;TFAP2{A,C}:-0.62106905885;PRDM1:-0.632613019305;NFATC1..3:-0.634038948678;ZIC1..3:-0.635160460186;GZF1:-0.636879426721;ZNF238:-0.647573727541;NR3C1:-0.652549457872;EBF1:-0.667631186805;ZNF423:-0.685222823791;GATA4:-0.687560806851;PAX1,9:-0.720599182958;HES1:-0.731529296433;SRF:-0.731963259443;POU2F1..3:-0.766146880135;HIC1:-0.777900484362;HMX1:-0.778537108024;GFI1B:-0.812612380855;GTF2A1,2:-0.812835315726;MTF1:-0.842867832694;ZNF148:-0.846441284134;GTF2I:-0.8498497831;TFAP2B:-0.868029910152;NFE2L1:-0.868836333353;POU3F1..4:-0.90609608512;MYFfamily:-0.943569138717;SP1:-0.996266028086;SPZ1:-1.00357495588;XCPE1{core}:-1.00689312383;MAFB:-1.0176752041;GCM1,2:-1.02587108704;TBP:-1.04045267671;TGIF1:-1.0574574822;PAX3,7:-1.06786182805;POU5F1:-1.11439196279;PATZ1:-1.11529022147;RREB1:-1.14296682957;MAZ:-1.15880684216;SMAD1..7,9:-1.23443752899;EGR1..3:-1.25239768049;MZF1:-1.533244892;NANOG{mouse}:-1.56411535569;TFAP4:-1.60160222188 | |top_motifs=ELK1,4_GABP{A,B1}:2.40287911666;bHLH_family:1.93744048766;SNAI1..3:1.78488528102;ZEB1:1.65167713154;CRX:1.43491339352;ARID5B:1.41507089406;FOX{I1,J2}:1.39782672364;FOXQ1:1.39126680145;FOXN1:1.37817321783;MYOD1:1.29651393549;PPARG:1.23906263098;AHR_ARNT_ARNT2:1.14670345638;NRF1:1.12388735175;NKX6-1,2:1.12050913446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05470132832;FOXD3:0.959529809605;ZBTB16:0.949405931637;PITX1..3:0.894788508273;HIF1A:0.888999135481;CDC5L:0.844029830858;FOXA2:0.826833658386;TEF:0.791693223667;ONECUT1,2:0.776755860688;ADNP_IRX_SIX_ZHX:0.71934898024;SREBF1,2:0.718833343884;ELF1,2,4:0.692528625664;NFE2L2:0.682674363492;YY1:0.66815015367;RFX2..5_RFXANK_RFXAP:0.661821958496;FOXM1:0.631503188704;RFX1:0.615824070398;POU1F1:0.614665083288;T:0.602659996485;NFE2:0.584014552702;FOXP1:0.567542029433;HOXA9_MEIS1:0.553329672471;FOS_FOS{B,L1}_JUN{B,D}:0.488333210687;VSX1,2:0.479054153106;NFY{A,B,C}:0.472817691946;BACH2:0.472391615949;ZNF143:0.449861740209;DBP:0.378197699903;FOSL2:0.361484413544;TOPORS:0.359010856587;FOXP3:0.358345982732;CDX1,2,4:0.353493204388;LHX3,4:0.344606107903;RORA:0.339738518262;HAND1,2:0.336919816881;ATF5_CREB3:0.334828475407;E2F1..5:0.298800342858;TBX4,5:0.29655627572;PDX1:0.296240117962;TFDP1:0.288511488304;ATF4:0.28084087843;TEAD1:0.280628546189;LMO2:0.276831189595;TLX2:0.248554581984;CREB1:0.227154324793;IKZF2:0.224268834694;IKZF1:0.203880511446;OCT4_SOX2{dimer}:0.180049322715;HMGA1,2:0.173754653282;NFIL3:0.161333808256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.146258190033;HSF1,2:0.138383234104;EN1,2:0.135750295448;NR6A1:0.126332629884;EVI1:0.121877255889;POU6F1:0.093745684416;PAX2:0.0813545094923;ATF2:0.0730932196986;SOX2:0.0632436712158;HOX{A4,D4}:0.055714445126;NFIX:0.0317444517799;HBP1_HMGB_SSRP1_UBTF:0.0292596978672;HNF1A:0.0209183655707;NANOG:0.0172106238928;XBP1:0.0124116991552;FOX{D1,D2}:0.00959223592182;FOX{F1,F2,J1}:0.00700453621171;ATF6:-0.00879130257769;FOXL1:-0.0179320619564;ALX1:-0.0258073940013;JUN:-0.0359135798467;ESR1:-0.0406781009088;ESRRA:-0.0461393782856;PAX8:-0.0481372417654;HLF:-0.0596357336754;RXRA_VDR{dimer}:-0.0635112644592;NKX3-1:-0.0741462850818;CEBPA,B_DDIT3:-0.0745560800492;NFKB1_REL_RELA:-0.0751294074682;IRF1,2:-0.0781156041732;NKX2-2,8:-0.0861457746638;MYB:-0.089599036365;CUX2:-0.0914419213715;LEF1_TCF7_TCF7L1,2:-0.0916942634375;NKX2-1,4:-0.100463624631;HOX{A6,A7,B6,B7}:-0.102413025477;PBX1:-0.118357608049;IRF7:-0.120114805459;TP53:-0.134740999596;BPTF:-0.141007405648;SOX{8,9,10}:-0.14154684747;MED-1{core}:-0.143230042779;RBPJ:-0.149301271848;FOXO1,3,4:-0.157317813588;GATA6:-0.158203149994;NR5A1,2:-0.162706593832;GLI1..3:-0.179824399915;SOX17:-0.189178861766;AIRE:-0.210793914178;DMAP1_NCOR{1,2}_SMARC:-0.210817127875;HNF4A_NR2F1,2:-0.215376999772;SOX5:-0.223296284119;NR1H4:-0.233612818361;NKX3-2:-0.267632029153;AR:-0.279948306687;TAL1_TCF{3,4,12}:-0.290538103805;ZBTB6:-0.297204435691;GFI1:-0.303312692931;ETS1,2:-0.332094554327;MYBL2:-0.334657920239;KLF4:-0.341138990585;REST:-0.342462059903;NKX2-3_NKX2-5:-0.360722589067;BREu{core}:-0.363147476122;ZFP161:-0.368939733846;STAT5{A,B}:-0.374930669083;PRRX1,2:-0.37915881117;SPI1:-0.395130758598;RUNX1..3:-0.409212496049;PAX6:-0.425948925495;SPIB:-0.444888682474;STAT2,4,6:-0.451325687863;PAX5:-0.457087525497;MTE{core}:-0.461788027059;HOX{A5,B5}:-0.463335840812;UFEwm:-0.490550233223;MEF2{A,B,C,D}:-0.491987831484;TLX1..3_NFIC{dimer}:-0.494140119074;EP300:-0.519371051075;ALX4:-0.544967820336;STAT1,3:-0.561586775433;RXR{A,B,G}:-0.571017774926;NHLH1,2:-0.586627272754;ZNF384:-0.591253231041;TFCP2:-0.602595519555;PAX4:-0.60642005977;TFAP2{A,C}:-0.62106905885;PRDM1:-0.632613019305;NFATC1..3:-0.634038948678;ZIC1..3:-0.635160460186;GZF1:-0.636879426721;ZNF238:-0.647573727541;NR3C1:-0.652549457872;EBF1:-0.667631186805;ZNF423:-0.685222823791;GATA4:-0.687560806851;PAX1,9:-0.720599182958;HES1:-0.731529296433;SRF:-0.731963259443;POU2F1..3:-0.766146880135;HIC1:-0.777900484362;HMX1:-0.778537108024;GFI1B:-0.812612380855;GTF2A1,2:-0.812835315726;MTF1:-0.842867832694;ZNF148:-0.846441284134;GTF2I:-0.8498497831;TFAP2B:-0.868029910152;NFE2L1:-0.868836333353;POU3F1..4:-0.90609608512;MYFfamily:-0.943569138717;SP1:-0.996266028086;SPZ1:-1.00357495588;XCPE1{core}:-1.00689312383;MAFB:-1.0176752041;GCM1,2:-1.02587108704;TBP:-1.04045267671;TGIF1:-1.0574574822;PAX3,7:-1.06786182805;POU5F1:-1.11439196279;PATZ1:-1.11529022147;RREB1:-1.14296682957;MAZ:-1.15880684216;SMAD1..7,9:-1.23443752899;EGR1..3:-1.25239768049;MZF1:-1.533244892;NANOG{mouse}:-1.56411535569;TFAP4:-1.60160222188 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10486-107A9;search_select_hide=table117:FF:10486-107A9 | |||
}} | }} |
Latest revision as of 14:26, 3 June 2020
Name: | squamous cell lung carcinoma cell line:EBC-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11273 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11273
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11273
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0706 |
10 | 10 | 0.0476 |
100 | 100 | 0.0438 |
101 | 101 | 0.633 |
102 | 102 | 0.826 |
103 | 103 | 0.173 |
104 | 104 | 0.347 |
105 | 105 | 0.514 |
106 | 106 | 0.063 |
107 | 107 | 0.176 |
108 | 108 | 0.703 |
109 | 109 | 0.021 |
11 | 11 | 0.997 |
110 | 110 | 0.247 |
111 | 111 | 0.0779 |
112 | 112 | 0.954 |
113 | 113 | 0.109 |
114 | 114 | 0.134 |
115 | 115 | 0.023 |
116 | 116 | 0.225 |
117 | 117 | 0.0183 |
118 | 118 | 0.51 |
119 | 119 | 0.0975 |
12 | 12 | 0.792 |
120 | 120 | 0.124 |
121 | 121 | 0.944 |
122 | 122 | 0.309 |
123 | 123 | 0.0256 |
124 | 124 | 0.47 |
125 | 125 | 0.637 |
126 | 126 | 0.641 |
127 | 127 | 0.632 |
128 | 128 | 0.0168 |
129 | 129 | 0.436 |
13 | 13 | 0.0171 |
130 | 130 | 0.566 |
131 | 131 | 0.235 |
132 | 132 | 0.236 |
133 | 133 | 0.122 |
134 | 134 | 0.182 |
135 | 135 | 0.063 |
136 | 136 | 0.208 |
137 | 137 | 0.488 |
138 | 138 | 0.912 |
139 | 139 | 0.274 |
14 | 14 | 0.799 |
140 | 140 | 0.489 |
141 | 141 | 0.37 |
142 | 142 | 0.301 |
143 | 143 | 0.0162 |
144 | 144 | 0.0285 |
145 | 145 | 0.574 |
146 | 146 | 0.41 |
147 | 147 | 0.997 |
148 | 148 | 0.0511 |
149 | 149 | 0.947 |
15 | 15 | 0.106 |
150 | 150 | 0.781 |
151 | 151 | 0.733 |
152 | 152 | 0.231 |
153 | 153 | 0.856 |
154 | 154 | 0.941 |
155 | 155 | 0.862 |
156 | 156 | 0.495 |
157 | 157 | 0.948 |
158 | 158 | 0.888 |
159 | 159 | 0.216 |
16 | 16 | 0.788 |
160 | 160 | 0.388 |
161 | 161 | 0.674 |
162 | 162 | 0.893 |
163 | 163 | 0.787 |
164 | 164 | 0.0761 |
165 | 165 | 0.428 |
166 | 166 | 0.299 |
167 | 167 | 0.0242 |
168 | 168 | 0.61 |
169 | 169 | 0.46 |
17 | 17 | 0.955 |
18 | 18 | 0.724 |
19 | 19 | 0.638 |
2 | 2 | 0.412 |
20 | 20 | 0.0624 |
21 | 21 | 0.342 |
22 | 22 | 0.575 |
23 | 23 | 0.148 |
24 | 24 | 0.0879 |
25 | 25 | 0.448 |
26 | 26 | 0.839 |
27 | 27 | 0.612 |
28 | 28 | 0.305 |
29 | 29 | 0.0402 |
3 | 3 | 0.407 |
30 | 30 | 0.535 |
31 | 31 | 0.365 |
32 | 32 | 0.0131 |
33 | 33 | 0.0739 |
34 | 34 | 0.102 |
35 | 35 | 0.498 |
36 | 36 | 0.0242 |
37 | 37 | 0.527 |
38 | 38 | 0.533 |
39 | 39 | 0.457 |
4 | 4 | 0.917 |
40 | 40 | 0.0215 |
41 | 41 | 0.491 |
42 | 42 | 0.219 |
43 | 43 | 0.71 |
44 | 44 | 0.52 |
45 | 45 | 0.635 |
46 | 46 | 0.895 |
47 | 47 | 0.313 |
48 | 48 | 0.535 |
49 | 49 | 0.984 |
5 | 5 | 0.66 |
50 | 50 | 0.705 |
51 | 51 | 0.908 |
52 | 52 | 0.146 |
53 | 53 | 0.747 |
54 | 54 | 0.717 |
55 | 55 | 0.866 |
56 | 56 | 0.928 |
57 | 57 | 0.351 |
58 | 58 | 0.983 |
59 | 59 | 0.404 |
6 | 6 | 0.545 |
60 | 60 | 0.578 |
61 | 61 | 0.302 |
62 | 62 | 0.705 |
63 | 63 | 0.343 |
64 | 64 | 0.937 |
65 | 65 | 0.397 |
66 | 66 | 0.119 |
67 | 67 | 0.905 |
68 | 68 | 0.0117 |
69 | 69 | 0.208 |
7 | 7 | 0.0738 |
70 | 70 | 0.0296 |
71 | 71 | 0.236 |
72 | 72 | 0.921 |
73 | 73 | 0.421 |
74 | 74 | 0.765 |
75 | 75 | 0.0116 |
76 | 76 | 0.0887 |
77 | 77 | 0.82 |
78 | 78 | 0.161 |
79 | 79 | 0.0546 |
8 | 8 | 0.665 |
80 | 80 | 0.573 |
81 | 81 | 0.477 |
82 | 82 | 0.523 |
83 | 83 | 0.538 |
84 | 84 | 0.684 |
85 | 85 | 0.327 |
86 | 86 | 0.462 |
87 | 87 | 0.0809 |
88 | 88 | 0.82 |
89 | 89 | 0.429 |
9 | 9 | 0.0919 |
90 | 90 | 0.176 |
91 | 91 | 0.885 |
92 | 92 | 0.588 |
93 | 93 | 0.836 |
94 | 94 | 0.901 |
95 | 95 | 0.201 |
96 | 96 | 0.788 |
97 | 97 | 0.723 |
98 | 98 | 0.501 |
99 | 99 | 0.066 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11273
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103001 EBC-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)
0103001 (EBC-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)