FFCP PHASE1:Hg19::chr20:19867269..19867283,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:19867269..19867283,+ to FFCP PHASE1:Hg19::chr20:19867269..19867283,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYP3 | |UniProt=Q8WYP3 | ||
|association_with_transcript=104bp_to_ENST00000255006,NM_001242581_5end | |||
|cluster_id=chr20:19867269..19867283,+ | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_3_at_RIN2_5end | |||
|id=chr20:19867269..19867283,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.47e-17!24;CL:0000115!4.35e-17!35;CL:0000071!1.88e-13!18;CL:0002546!1.88e-13!18;CL:0002078!1.67e-12!44;CL:0000222!9.69e-11!119;CL:0000359!4.38e-10!32;CL:0000192!3.15e-08!42;CL:0000514!3.15e-08!42;CL:0000213!7.18e-08!57;CL:0000215!7.18e-08!57;CL:1000413!1.36e-07!9;CL:0002539!3.02e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.32e-20;24!CL:0000115;2.21e-17;36!CL:0000071;1.02e-15;18!CL:0000359;9.36e-11;32!CL:0002078;1.60e-09;45!CL:1000413;9.52e-09;9!CL:0002539;2.45e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.39e-20,24;CL:0000115,3.86e-20,36;CL:0000071,1.07e-15,18;CL:0002546,1.07e-15,18;CL:0002078,4.29e-14,45;CL:0000359,3.61e-11,32;CL:0000222,1.25e-10,121;CL:0000213,4.23e-09,58;CL:0000215,4.23e-09,58;CL:1000413,9.82e-09,9;CL:0002539,2.52e-08,10;CL:0000192,1.76e-07,43;CL:0000514,1.76e-07,43 | |||
|ontology_enrichment_development_v019=CL:0002546;1.02e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.22e-39!241;UBERON:0000477!1.98e-33!286;UBERON:0000025!2.81e-32!194;UBERON:0000055!3.14e-30!69;UBERON:0002049!1.37e-28!79;UBERON:0007798!1.37e-28!79;UBERON:0000119!3.34e-28!312;UBERON:0004872!5.00e-28!84;UBERON:0000483!1.41e-27!309;UBERON:0001981!4.80e-27!60;UBERON:0007500!4.80e-27!60;UBERON:0004537!4.80e-27!60;UBERON:0006965!4.80e-27!60;UBERON:0007023!1.78e-23!115;UBERON:0001009!5.79e-23!113;UBERON:0003914!4.65e-22!118;UBERON:0000467!5.31e-22!625;UBERON:0004535!8.96e-22!110;UBERON:0000480!1.04e-21!626;UBERON:0000468!1.17e-20!659;UBERON:0001637!1.08e-19!42;UBERON:0003509!1.08e-19!42;UBERON:0004572!1.08e-19!42;UBERON:0000481!6.49e-19!347;UBERON:0000490!3.99e-17!138;UBERON:0000475!4.22e-16!365;UBERON:0004573!1.24e-15!33;UBERON:0004571!1.24e-15!33;UBERON:0000922!5.30e-15!612;UBERON:0002050!7.32e-15!605;UBERON:0005423!7.32e-15!605;UBERON:0000923!1.18e-14!604;UBERON:0005291!1.18e-14!604;UBERON:0006598!1.18e-14!604;UBERON:0002532!1.18e-14!604;UBERON:0001986!1.88e-13!18;UBERON:0004638!1.88e-13!18;UBERON:0004852!1.88e-13!18;UBERON:0000487!3.03e-12!22;UBERON:0000947!1.57e-11!21;UBERON:0010191!1.57e-11!21;UBERON:0001049!4.11e-11!57;UBERON:0005068!4.11e-11!57;UBERON:0006241!4.11e-11!57;UBERON:0007135!4.11e-11!57;UBERON:0002100!8.17e-11!216;UBERON:0003075!8.30e-11!86;UBERON:0007284!8.30e-11!86;UBERON:0006914!3.81e-10!25;UBERON:0002616!8.83e-10!59;UBERON:0003080!1.20e-09!42;UBERON:0002346!1.46e-09!90;UBERON:0002780!3.58e-09!41;UBERON:0001890!3.58e-09!41;UBERON:0006240!3.58e-09!41;UBERON:0003056!3.59e-08!61;UBERON:0002020!6.17e-08!34;UBERON:0003528!6.17e-08!34;UBERON:0000062!6.85e-08!511;UBERON:0001893!8.22e-08!34;UBERON:0007100!9.75e-08!27;UBERON:0003915!1.36e-07!9;UBERON:0004700!1.36e-07!9;UBERON:0001917!1.36e-07!9;UBERON:0000955!1.39e-07!69;UBERON:0006238!1.39e-07!69;UBERON:0002791!1.46e-07!33;UBERON:0001017!2.63e-07!82;UBERON:0004237!3.02e-07!10;UBERON:0004695!3.02e-07!10;UBERON:0002111!3.02e-07!10;UBERON:0004178!3.02e-07!10;UBERON:0001869!3.49e-07!32;UBERON:0003104!5.17e-07!238;UBERON:0009142!5.17e-07!238;UBERON:0001048!5.49e-07!168;UBERON:0000153!8.13e-07!129;UBERON:0007811!8.13e-07!129;UBERON:0000033!8.16e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.80e-17;33!UBERON:0004571;4.80e-17;33!UBERON:0001637;6.83e-17;42!UBERON:0003509;6.83e-17;42!UBERON:0004572;6.83e-17;42!UBERON:0000055;1.51e-16;65!UBERON:0007500;4.57e-16;56!UBERON:0001981;4.57e-16;56!UBERON:0004537;4.57e-16;56!UBERON:0004638;1.02e-15;18!UBERON:0001986;1.02e-15;18!UBERON:0004852;1.02e-15;18!UBERON:0000487;1.83e-14;22!UBERON:0000947;1.71e-13;21!UBERON:0010191;1.71e-13;21!UBERON:0002049;1.48e-12;75!UBERON:0007798;1.48e-12;75!UBERON:0006914;1.60e-11;25!UBERON:0000490;2.68e-11;33!UBERON:0003914;3.84e-10;74!UBERON:0003915;9.52e-09;9!UBERON:0004700;9.52e-09;9!UBERON:0001917;9.52e-09;9!UBERON:0004237;2.45e-08;10!UBERON:0004695;2.45e-08;10!UBERON:0002111;2.45e-08;10!UBERON:0004178;2.45e-08;10!UBERON:0001009;4.39e-08;112!UBERON:0007100;7.52e-08;25!UBERON:0007023;1.00e-07;114!UBERON:0001893;1.73e-07;34!UBERON:0002780;1.96e-07;41!UBERON:0001890;1.96e-07;41!UBERON:0003528;2.79e-07;34!UBERON:0002020;2.79e-07;34!UBERON:0004535;3.13e-07;109!UBERON:0002619;3.26e-07;22!UBERON:0002791;5.08e-07;32!UBERON:0001869;5.64e-07;32 | |||
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| ||
|short_description=p3@RIN2 | |||
}} | }} |
Latest revision as of 16:07, 24 September 2015
Short description: | p3@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RIN2_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 104bp_to_ENST00000255006, NM_001242581_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | Q8WYP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.39e-20 | 24 |
endothelial cell | 3.86e-20 | 36 |
blood vessel endothelial cell | 1.07e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.07e-15 | 18 |
meso-epithelial cell | 4.29e-14 | 45 |
vascular associated smooth muscle cell | 3.61e-11 | 32 |
mesodermal cell | 1.25e-10 | 121 |
lining cell | 4.23e-09 | 58 |
barrier cell | 4.23e-09 | 58 |
endothelial cell of artery | 9.82e-09 | 9 |
aortic smooth muscle cell | 2.52e-08 | 10 |
smooth muscle cell | 1.76e-07 | 43 |
smooth muscle myoblast | 1.76e-07 | 43 |