Personal tools

FF:11487-119E2: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 69: Line 69:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=stimulated by crosslinking the high affinity Ige-R with monoclonal antibody "clone-AER-37" at 2ug/ml for 2.5hrs at 37C
|sample_experimental_condition=stimulated by crosslinking the high affinity Ige-R with monoclonal antibody "clone-AER-37" at 2ug/ml for 2.5hrs at 37C
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.90323251314858e-233!GO:0043227;membrane-bound organelle;2.82583883137792e-203!GO:0043231;intracellular membrane-bound organelle;7.11911501468626e-203!GO:0043226;organelle;2.38528051421025e-191!GO:0043229;intracellular organelle;1.43356849032304e-190!GO:0005737;cytoplasm;3.42794046685527e-131!GO:0044422;organelle part;7.82030965946079e-118!GO:0044446;intracellular organelle part;3.22607299858901e-116!GO:0005634;nucleus;1.63761985788385e-109!GO:0044237;cellular metabolic process;3.03922224627339e-98!GO:0044238;primary metabolic process;5.53386837489146e-97!GO:0043170;macromolecule metabolic process;9.13412435681521e-95!GO:0044444;cytoplasmic part;7.31915332271032e-89!GO:0032991;macromolecular complex;1.75659047975322e-76!GO:0044428;nuclear part;1.41543059139515e-75!GO:0043283;biopolymer metabolic process;2.1304806673501e-68!GO:0003723;RNA binding;2.25768558342151e-67!GO:0043233;organelle lumen;3.33051680116654e-67!GO:0031974;membrane-enclosed lumen;3.33051680116654e-67!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.22391191301712e-64!GO:0030529;ribonucleoprotein complex;2.39536506289366e-63!GO:0010467;gene expression;2.09838182693429e-60!GO:0005515;protein binding;1.32486395679718e-58!GO:0033036;macromolecule localization;6.76471215151855e-54!GO:0015031;protein transport;3.91336288094498e-51!GO:0006396;RNA processing;1.00621501014795e-50!GO:0045184;establishment of protein localization;8.08295661874145e-50!GO:0008104;protein localization;3.90461063752363e-49!GO:0031981;nuclear lumen;5.41784026326051e-49!GO:0003676;nucleic acid binding;2.4558298748015e-47!GO:0016071;mRNA metabolic process;8.19269922716323e-45!GO:0016043;cellular component organization and biogenesis;3.30389905694886e-41!GO:0005739;mitochondrion;1.75301354298372e-40!GO:0016070;RNA metabolic process;3.86814244169022e-40!GO:0008380;RNA splicing;3.66627219289377e-39!GO:0006397;mRNA processing;7.13597108516794e-38!GO:0043234;protein complex;1.20568352542911e-37!GO:0046907;intracellular transport;4.28231292695546e-37!GO:0031090;organelle membrane;1.76498326627626e-36!GO:0019538;protein metabolic process;2.66241568945808e-35!GO:0044267;cellular protein metabolic process;1.07451579190725e-32!GO:0006412;translation;2.36279899802666e-32!GO:0006886;intracellular protein transport;3.95190061299766e-32!GO:0044260;cellular macromolecule metabolic process;9.58737882681503e-32!GO:0051649;establishment of cellular localization;8.2739904916362e-31!GO:0006259;DNA metabolic process;1.90124677884279e-30!GO:0005654;nucleoplasm;2.20221564128813e-30!GO:0051641;cellular localization;2.83649729080973e-30!GO:0005829;cytosol;9.58845063689364e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.81764030628304e-29!GO:0006996;organelle organization and biogenesis;8.72679001201684e-29!GO:0005840;ribosome;3.02171979393552e-28!GO:0005681;spliceosome;4.03124360330184e-28!GO:0044429;mitochondrial part;9.96809673626789e-28!GO:0031967;organelle envelope;1.53115161507849e-26!GO:0065003;macromolecular complex assembly;2.46556998162816e-26!GO:0031975;envelope;2.85045310597879e-26!GO:0009058;biosynthetic process;5.54109025493638e-26!GO:0000166;nucleotide binding;8.82802589289868e-25!GO:0009059;macromolecule biosynthetic process;1.74244559937102e-24!GO:0044451;nucleoplasm part;2.05384725657744e-24!GO:0044249;cellular biosynthetic process;3.19314545433067e-24!GO:0022607;cellular component assembly;8.52937517029447e-23!GO:0003735;structural constituent of ribosome;1.53576732208464e-22!GO:0007049;cell cycle;6.34543407594248e-22!GO:0043228;non-membrane-bound organelle;2.59800847949908e-21!GO:0043232;intracellular non-membrane-bound organelle;2.59800847949908e-21!GO:0016462;pyrophosphatase activity;6.29402645571333e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.68140996712011e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.63406243772476e-20!GO:0006974;response to DNA damage stimulus;1.79038876094604e-20!GO:0017111;nucleoside-triphosphatase activity;7.88397596469658e-20!GO:0050794;regulation of cellular process;2.13077469166716e-19!GO:0033279;ribosomal subunit;4.86880432935482e-19!GO:0005730;nucleolus;6.67453101827355e-19!GO:0006281;DNA repair;7.45357792416398e-18!GO:0005740;mitochondrial envelope;1.8380018752717e-17!GO:0022402;cell cycle process;4.49326133469229e-17!GO:0022618;protein-RNA complex assembly;4.61795796783016e-17!GO:0019866;organelle inner membrane;4.66471622265836e-17!GO:0032553;ribonucleotide binding;5.28658588538208e-17!GO:0032555;purine ribonucleotide binding;5.28658588538208e-17!GO:0016604;nuclear body;5.76239993770125e-17!GO:0031966;mitochondrial membrane;8.79061872987642e-17!GO:0016874;ligase activity;9.95069609506068e-17!GO:0012505;endomembrane system;1.03281449994459e-16!GO:0017076;purine nucleotide binding;3.8004927118755e-16!GO:0006457;protein folding;4.81194148512586e-16!GO:0006512;ubiquitin cycle;5.07069306473586e-16!GO:0012501;programmed cell death;5.8905399797581e-16!GO:0006915;apoptosis;7.35442327061544e-16!GO:0019222;regulation of metabolic process;9.05834857875917e-16!GO:0051276;chromosome organization and biogenesis;1.08298019110921e-15!GO:0008219;cell death;1.13141785198881e-15!GO:0016265;death;1.13141785198881e-15!GO:0048770;pigment granule;1.56856191370768e-15!GO:0042470;melanosome;1.56856191370768e-15!GO:0005743;mitochondrial inner membrane;2.02102707945088e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.26415431595243e-15!GO:0006119;oxidative phosphorylation;5.27105797170931e-15!GO:0044445;cytosolic part;5.3856991981516e-15!GO:0008134;transcription factor binding;9.37888342022323e-15!GO:0016192;vesicle-mediated transport;1.12778461877238e-14!GO:0005694;chromosome;1.46861046956128e-14!GO:0016607;nuclear speck;1.65923805889686e-14!GO:0009719;response to endogenous stimulus;2.71789192634085e-14!GO:0006605;protein targeting;2.94134476546115e-14!GO:0050789;regulation of biological process;3.86757900205444e-14!GO:0008135;translation factor activity, nucleic acid binding;8.55049986644288e-14!GO:0005524;ATP binding;9.83465400746753e-14!GO:0044265;cellular macromolecule catabolic process;1.44372190114924e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.75981260315173e-13!GO:0000375;RNA splicing, via transesterification reactions;2.75981260315173e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.75981260315173e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.84309540196173e-13!GO:0006913;nucleocytoplasmic transport;4.18856046748608e-13!GO:0031323;regulation of cellular metabolic process;4.72771407806952e-13!GO:0032559;adenyl ribonucleotide binding;5.15037357047592e-13!GO:0048193;Golgi vesicle transport;6.49135373821823e-13!GO:0051169;nuclear transport;8.35895675238595e-13!GO:0043412;biopolymer modification;8.89608077960982e-13!GO:0006350;transcription;9.25064205363981e-13!GO:0042254;ribosome biogenesis and assembly;1.03431376459257e-12!GO:0016887;ATPase activity;1.11556217701414e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.15616194529529e-12!GO:0042623;ATPase activity, coupled;1.27436647981261e-12!GO:0004386;helicase activity;1.38433030700201e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.55849348645749e-12!GO:0019941;modification-dependent protein catabolic process;1.61119042079594e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.61119042079594e-12!GO:0044257;cellular protein catabolic process;1.97029985107785e-12!GO:0005783;endoplasmic reticulum;2.54362668759219e-12!GO:0031980;mitochondrial lumen;2.78314883409008e-12!GO:0005759;mitochondrial matrix;2.78314883409008e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.86552737128475e-12!GO:0030554;adenyl nucleotide binding;3.96763619921935e-12!GO:0000278;mitotic cell cycle;5.73062311544335e-12!GO:0051726;regulation of cell cycle;5.78788237689445e-12!GO:0000074;regulation of progression through cell cycle;6.12562216692353e-12!GO:0006323;DNA packaging;1.09774042130336e-11!GO:0044455;mitochondrial membrane part;1.29729097842411e-11!GO:0008026;ATP-dependent helicase activity;1.61409230403079e-11!GO:0051082;unfolded protein binding;1.66988001323221e-11!GO:0006446;regulation of translational initiation;1.97766214443836e-11!GO:0005794;Golgi apparatus;2.47529840346631e-11!GO:0010468;regulation of gene expression;2.77630257048006e-11!GO:0043285;biopolymer catabolic process;2.8797995789376e-11!GO:0044432;endoplasmic reticulum part;3.50383751800625e-11!GO:0003743;translation initiation factor activity;3.64883195184379e-11!GO:0006413;translational initiation;4.04910792258129e-11!GO:0044427;chromosomal part;5.44535448696062e-11!GO:0048523;negative regulation of cellular process;6.22704174570806e-11!GO:0032774;RNA biosynthetic process;6.64194375244896e-11!GO:0050657;nucleic acid transport;6.78105193862516e-11!GO:0051236;establishment of RNA localization;6.78105193862516e-11!GO:0050658;RNA transport;6.78105193862516e-11!GO:0042981;regulation of apoptosis;7.21430296247825e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.3720078108689e-11!GO:0006351;transcription, DNA-dependent;8.009426737958e-11!GO:0043067;regulation of programmed cell death;9.81713325490551e-11!GO:0006464;protein modification process;1.07112575505765e-10!GO:0051301;cell division;1.10008281573534e-10!GO:0006403;RNA localization;1.15048638063347e-10!GO:0044248;cellular catabolic process;1.849829708078e-10!GO:0065007;biological regulation;2.1403972364823e-10!GO:0044453;nuclear membrane part;2.61897469329127e-10!GO:0043687;post-translational protein modification;2.65327454024165e-10!GO:0015935;small ribosomal subunit;5.32104092642846e-10!GO:0048519;negative regulation of biological process;5.41199911568887e-10!GO:0000087;M phase of mitotic cell cycle;5.57764964330465e-10!GO:0009057;macromolecule catabolic process;7.95818140802858e-10!GO:0022403;cell cycle phase;8.47457247172459e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.98790057365676e-10!GO:0006888;ER to Golgi vesicle-mediated transport;1.19331015509412e-09!GO:0007067;mitosis;1.27729254397141e-09!GO:0015934;large ribosomal subunit;1.48968632164402e-09!GO:0005635;nuclear envelope;1.48968632164402e-09!GO:0043566;structure-specific DNA binding;1.70893058290279e-09!GO:0005746;mitochondrial respiratory chain;1.82093751601854e-09!GO:0065004;protein-DNA complex assembly;1.87345201166786e-09!GO:0003712;transcription cofactor activity;2.08777141891248e-09!GO:0006333;chromatin assembly or disassembly;2.20651477185823e-09!GO:0006260;DNA replication;2.67060472580377e-09!GO:0031965;nuclear membrane;2.81865806396992e-09!GO:0006366;transcription from RNA polymerase II promoter;3.14530183901572e-09!GO:0051028;mRNA transport;3.61973535861818e-09!GO:0016568;chromatin modification;3.61973535861818e-09!GO:0045449;regulation of transcription;3.67034518715057e-09!GO:0005643;nuclear pore;4.25681521862384e-09!GO:0008270;zinc ion binding;5.21431488697564e-09!GO:0008639;small protein conjugating enzyme activity;5.54432905398735e-09!GO:0030163;protein catabolic process;6.9769994816603e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.4234313636492e-09!GO:0006364;rRNA processing;7.73238831859138e-09!GO:0006355;regulation of transcription, DNA-dependent;7.73892568141399e-09!GO:0051186;cofactor metabolic process;8.67876557508902e-09!GO:0004842;ubiquitin-protein ligase activity;8.71751298530243e-09!GO:0017038;protein import;1.09036472335807e-08!GO:0016072;rRNA metabolic process;1.09880667492638e-08!GO:0005789;endoplasmic reticulum membrane;1.20117431172916e-08!GO:0019787;small conjugating protein ligase activity;1.34773041669047e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.43781137265384e-08!GO:0003954;NADH dehydrogenase activity;1.43781137265384e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.43781137265384e-08!GO:0065002;intracellular protein transport across a membrane;1.64765419331169e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.78354103838442e-08!GO:0000279;M phase;2.08719717646608e-08!GO:0003677;DNA binding;2.99461267331768e-08!GO:0003697;single-stranded DNA binding;4.08338989135266e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.44906228740167e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.17399808512139e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.22813324955757e-08!GO:0042775;organelle ATP synthesis coupled electron transport;7.88458471602416e-08!GO:0042773;ATP synthesis coupled electron transport;7.88458471602416e-08!GO:0046930;pore complex;1.05956108873329e-07!GO:0006793;phosphorus metabolic process;1.1785497619883e-07!GO:0006796;phosphate metabolic process;1.1785497619883e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.32043763396531e-07!GO:0046914;transition metal ion binding;2.26846034909854e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.29532325653464e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.32172104349156e-07!GO:0043069;negative regulation of programmed cell death;2.32996211392167e-07!GO:0006732;coenzyme metabolic process;2.47230381616862e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.62419325205434e-07!GO:0045271;respiratory chain complex I;2.62419325205434e-07!GO:0005747;mitochondrial respiratory chain complex I;2.62419325205434e-07!GO:0051246;regulation of protein metabolic process;2.66824373307373e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.8791682075004e-07!GO:0008565;protein transporter activity;2.92289016107964e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.95058033492242e-07!GO:0019829;cation-transporting ATPase activity;3.38137171503573e-07!GO:0006163;purine nucleotide metabolic process;3.567112668582e-07!GO:0016881;acid-amino acid ligase activity;3.66188368084804e-07!GO:0015630;microtubule cytoskeleton;3.6923988072215e-07!GO:0043066;negative regulation of apoptosis;3.81890576887361e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.33489659438633e-07!GO:0006399;tRNA metabolic process;5.0297114189827e-07!GO:0045786;negative regulation of progression through cell cycle;5.52266745545235e-07!GO:0051170;nuclear import;5.83795302859994e-07!GO:0009259;ribonucleotide metabolic process;5.83795302859994e-07!GO:0005761;mitochondrial ribosome;7.41761944811991e-07!GO:0000313;organellar ribosome;7.41761944811991e-07!GO:0015986;ATP synthesis coupled proton transport;7.58817177932714e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.58817177932714e-07!GO:0006916;anti-apoptosis;7.88554545849081e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.85635389366845e-07!GO:0006164;purine nucleotide biosynthetic process;9.87312304039545e-07!GO:0019899;enzyme binding;1.11954250251062e-06!GO:0016779;nucleotidyltransferase activity;1.33926684406729e-06!GO:0009150;purine ribonucleotide metabolic process;1.42741002251841e-06!GO:0005793;ER-Golgi intermediate compartment;1.64205987409606e-06!GO:0006606;protein import into nucleus;1.72568743010661e-06!GO:0005813;centrosome;1.87109943262718e-06!GO:0046034;ATP metabolic process;1.92644078202538e-06!GO:0016363;nuclear matrix;1.92644078202538e-06!GO:0003713;transcription coactivator activity;1.93462166833723e-06!GO:0000785;chromatin;1.97599215364466e-06!GO:0005768;endosome;2.23123425817811e-06!GO:0003724;RNA helicase activity;2.74189255428247e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.79060913172353e-06!GO:0016563;transcription activator activity;2.877650322421e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.89089007372429e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.89089007372429e-06!GO:0003924;GTPase activity;3.02663529566937e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.39378223897876e-06!GO:0007243;protein kinase cascade;3.48647097446496e-06!GO:0006613;cotranslational protein targeting to membrane;3.48647097446496e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.48850206759607e-06!GO:0048475;coated membrane;3.76039174147085e-06!GO:0030117;membrane coat;3.76039174147085e-06!GO:0005525;GTP binding;3.86124944486519e-06!GO:0009152;purine ribonucleotide biosynthetic process;3.96763799010047e-06!GO:0031988;membrane-bound vesicle;4.26546981440398e-06!GO:0009141;nucleoside triphosphate metabolic process;4.35824830893209e-06!GO:0030120;vesicle coat;4.54523775031922e-06!GO:0030662;coated vesicle membrane;4.54523775031922e-06!GO:0009260;ribonucleotide biosynthetic process;4.67186844884394e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.74382708056766e-06!GO:0006754;ATP biosynthetic process;4.80399994657625e-06!GO:0006753;nucleoside phosphate metabolic process;4.80399994657625e-06!GO:0043038;amino acid activation;5.21891012705997e-06!GO:0006418;tRNA aminoacylation for protein translation;5.21891012705997e-06!GO:0043039;tRNA aminoacylation;5.21891012705997e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.23355393697074e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.23355393697074e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.23355393697074e-06!GO:0032940;secretion by cell;5.4237389798594e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.64521070793949e-06!GO:0005815;microtubule organizing center;6.52731376627395e-06!GO:0016787;hydrolase activity;6.95876680832362e-06!GO:0016310;phosphorylation;7.11933577198803e-06!GO:0051168;nuclear export;7.43698214534919e-06!GO:0031982;vesicle;8.6177814176582e-06!GO:0009142;nucleoside triphosphate biosynthetic process;8.80239804333535e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.80239804333535e-06!GO:0006402;mRNA catabolic process;8.87772731505349e-06!GO:0045045;secretory pathway;8.87772731505349e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.00774920079865e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.00774920079865e-06!GO:0006461;protein complex assembly;9.20390135352357e-06!GO:0000245;spliceosome assembly;9.90551113454999e-06!GO:0005770;late endosome;1.1043725536733e-05!GO:0009060;aerobic respiration;1.34061804001875e-05!GO:0003690;double-stranded DNA binding;1.36523574653984e-05!GO:0032446;protein modification by small protein conjugation;1.42976564370549e-05!GO:0045333;cellular respiration;1.63806452105287e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.73854617294045e-05!GO:0006950;response to stress;1.85130470025407e-05!GO:0006334;nucleosome assembly;2.33697875352988e-05!GO:0051427;hormone receptor binding;2.35640974460045e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.55158394710932e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.6076468357043e-05!GO:0032561;guanyl ribonucleotide binding;2.65959437266489e-05!GO:0019001;guanyl nucleotide binding;2.65959437266489e-05!GO:0051789;response to protein stimulus;2.70990449332886e-05!GO:0006986;response to unfolded protein;2.70990449332886e-05!GO:0044431;Golgi apparatus part;2.78103241921689e-05!GO:0016567;protein ubiquitination;2.84126774665683e-05!GO:0006310;DNA recombination;2.84320021360884e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.06604683041356e-05!GO:0033673;negative regulation of kinase activity;3.08606826934353e-05!GO:0006469;negative regulation of protein kinase activity;3.08606826934353e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.49029210659677e-05!GO:0009055;electron carrier activity;3.50381452927237e-05!GO:0005773;vacuole;3.57831629130105e-05!GO:0005819;spindle;3.60871219582635e-05!GO:0016197;endosome transport;3.61103806263899e-05!GO:0031410;cytoplasmic vesicle;4.01606363851407e-05!GO:0035257;nuclear hormone receptor binding;4.26759699978254e-05!GO:0030521;androgen receptor signaling pathway;4.46675425284208e-05!GO:0051188;cofactor biosynthetic process;4.80062011016795e-05!GO:0051348;negative regulation of transferase activity;4.89347837971467e-05!GO:0006302;double-strand break repair;6.00885409665298e-05!GO:0031497;chromatin assembly;6.28435894483653e-05!GO:0065009;regulation of a molecular function;6.28435894483653e-05!GO:0031324;negative regulation of cellular metabolic process;6.34698968625091e-05!GO:0009056;catabolic process;6.54789618684022e-05!GO:0004298;threonine endopeptidase activity;6.76007999980481e-05!GO:0016740;transferase activity;7.31743386222237e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.64166616704068e-05!GO:0008654;phospholipid biosynthetic process;8.04361783810367e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.48357214397086e-05!GO:0045259;proton-transporting ATP synthase complex;0.000107080384519192!GO:0000151;ubiquitin ligase complex;0.000111611933924561!GO:0008186;RNA-dependent ATPase activity;0.000124769516677267!GO:0030518;steroid hormone receptor signaling pathway;0.00013621957491329!GO:0009108;coenzyme biosynthetic process;0.000141859827297688!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000169647446090985!GO:0015399;primary active transmembrane transporter activity;0.000169647446090985!GO:0007059;chromosome segregation;0.000170032766109467!GO:0044440;endosomal part;0.000170489120550205!GO:0010008;endosome membrane;0.000170489120550205!GO:0006401;RNA catabolic process;0.000180790178015616!GO:0006261;DNA-dependent DNA replication;0.000180790178015616!GO:0006099;tricarboxylic acid cycle;0.000183239066251137!GO:0046356;acetyl-CoA catabolic process;0.000183239066251137!GO:0006752;group transfer coenzyme metabolic process;0.000186503042263019!GO:0005798;Golgi-associated vesicle;0.000186972310242583!GO:0031252;leading edge;0.000189091699086296!GO:0007242;intracellular signaling cascade;0.00020577466955667!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000216018931190018!GO:0009892;negative regulation of metabolic process;0.000233208695494955!GO:0003729;mRNA binding;0.000233924628924486!GO:0008047;enzyme activator activity;0.000247451676382419!GO:0000075;cell cycle checkpoint;0.000255369631196986!GO:0031072;heat shock protein binding;0.000276347438467436!GO:0044452;nucleolar part;0.000284874851703124!GO:0006352;transcription initiation;0.000305360523927013!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00030587606124846!GO:0000323;lytic vacuole;0.00030587606124846!GO:0005764;lysosome;0.00030587606124846!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000321279306238866!GO:0006084;acetyl-CoA metabolic process;0.000327209549761128!GO:0007005;mitochondrion organization and biogenesis;0.00033424700156745!GO:0006612;protein targeting to membrane;0.000347787763779873!GO:0004004;ATP-dependent RNA helicase activity;0.000389111684083882!GO:0006891;intra-Golgi vesicle-mediated transport;0.000412145960374962!GO:0043065;positive regulation of apoptosis;0.00043460279714299!GO:0006383;transcription from RNA polymerase III promoter;0.000452971486358732!GO:0006917;induction of apoptosis;0.000453427183463812!GO:0006818;hydrogen transport;0.000466256326986424!GO:0000776;kinetochore;0.000467443643226468!GO:0048522;positive regulation of cellular process;0.00049053312935313!GO:0043623;cellular protein complex assembly;0.00049053312935313!GO:0030522;intracellular receptor-mediated signaling pathway;0.000506058430859625!GO:0015992;proton transport;0.000562657095259568!GO:0048500;signal recognition particle;0.000611137382229897!GO:0043068;positive regulation of programmed cell death;0.000611137382229897!GO:0012502;induction of programmed cell death;0.000631075553340564!GO:0009967;positive regulation of signal transduction;0.000631347741519018!GO:0051187;cofactor catabolic process;0.000643655488711131!GO:0009615;response to virus;0.000660833469318989!GO:0043021;ribonucleoprotein binding;0.000719273319649519!GO:0022406;membrane docking;0.000722608501808007!GO:0048278;vesicle docking;0.000722608501808007!GO:0043086;negative regulation of catalytic activity;0.000740595161450228!GO:0006405;RNA export from nucleus;0.000759253943668303!GO:0043492;ATPase activity, coupled to movement of substances;0.000775590493524543!GO:0022415;viral reproductive process;0.000815198817468809!GO:0030384;phosphoinositide metabolic process;0.000824491903952619!GO:0043407;negative regulation of MAP kinase activity;0.000838676855146331!GO:0003899;DNA-directed RNA polymerase activity;0.000851237496055269!GO:0007050;cell cycle arrest;0.000871233640931168!GO:0000139;Golgi membrane;0.000900340027194745!GO:0051329;interphase of mitotic cell cycle;0.000901241198387385!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000927244846062789!GO:0009109;coenzyme catabolic process;0.000930136628582416!GO:0050790;regulation of catalytic activity;0.000975274928645122!GO:0035258;steroid hormone receptor binding;0.000980180903193275!GO:0006607;NLS-bearing substrate import into nucleus;0.00103134534697035!GO:0004527;exonuclease activity;0.00103980007563974!GO:0030880;RNA polymerase complex;0.00109458067798757!GO:0000775;chromosome, pericentric region;0.00117007371653306!GO:0005096;GTPase activator activity;0.00118374881023422!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00119119502232017!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00122544812116657!GO:0000428;DNA-directed RNA polymerase complex;0.00122544812116657!GO:0005667;transcription factor complex;0.00124674052935351!GO:0030127;COPII vesicle coat;0.00128945238208942!GO:0012507;ER to Golgi transport vesicle membrane;0.00128945238208942!GO:0030134;ER to Golgi transport vesicle;0.00129649713508843!GO:0005885;Arp2/3 protein complex;0.00132926082824454!GO:0051252;regulation of RNA metabolic process;0.00138222059331016!GO:0032984;macromolecular complex disassembly;0.00139704898291665!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00144405537259594!GO:0006904;vesicle docking during exocytosis;0.0014852489821993!GO:0051325;interphase;0.0015951031209646!GO:0005769;early endosome;0.00165867716153182!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00165867716153182!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00165867716153182!GO:0045047;protein targeting to ER;0.00165867716153182!GO:0005788;endoplasmic reticulum lumen;0.00168680529153012!GO:0009117;nucleotide metabolic process;0.00174204364381702!GO:0016481;negative regulation of transcription;0.00177336222785547!GO:0016564;transcription repressor activity;0.00178410431121514!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00185324914709357!GO:0030658;transport vesicle membrane;0.00195533164616835!GO:0005048;signal sequence binding;0.00204672544466378!GO:0008312;7S RNA binding;0.00214061854449278!GO:0051052;regulation of DNA metabolic process;0.00214061854449278!GO:0016853;isomerase activity;0.00215152985286369!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00216267743642708!GO:0022411;cellular component disassembly;0.00219564375120933!GO:0008610;lipid biosynthetic process;0.00226493980649187!GO:0003684;damaged DNA binding;0.00232764334309708!GO:0043681;protein import into mitochondrion;0.00242072990914733!GO:0006091;generation of precursor metabolites and energy;0.00259049302294586!GO:0043241;protein complex disassembly;0.00277679189151952!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00282040253806473!GO:0006417;regulation of translation;0.00282040253806473!GO:0003678;DNA helicase activity;0.00311267880448388!GO:0007051;spindle organization and biogenesis;0.00330523336989837!GO:0030663;COPI coated vesicle membrane;0.00330523336989837!GO:0030126;COPI vesicle coat;0.00330523336989837!GO:0043624;cellular protein complex disassembly;0.00339784101151232!GO:0031326;regulation of cellular biosynthetic process;0.00339784101151232!GO:0033367;protein localization in mast cell secretory granule;0.00339784101151232!GO:0033365;protein localization in organelle;0.00339784101151232!GO:0033371;T cell secretory granule organization and biogenesis;0.00339784101151232!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00339784101151232!GO:0033375;protease localization in T cell secretory granule;0.00339784101151232!GO:0042629;mast cell granule;0.00339784101151232!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00339784101151232!GO:0033364;mast cell secretory granule organization and biogenesis;0.00339784101151232!GO:0033380;granzyme B localization in T cell secretory granule;0.00339784101151232!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00339784101151232!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00339784101151232!GO:0033368;protease localization in mast cell secretory granule;0.00339784101151232!GO:0033366;protein localization in secretory granule;0.00339784101151232!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00339784101151232!GO:0033374;protein localization in T cell secretory granule;0.00339784101151232!GO:0016126;sterol biosynthetic process;0.00349694924301418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00358375928191899!GO:0006643;membrane lipid metabolic process;0.00370110324934365!GO:0051338;regulation of transferase activity;0.00374356991095552!GO:0016859;cis-trans isomerase activity;0.00375911643513201!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00376014253160311!GO:0003711;transcription elongation regulator activity;0.00384045564815205!GO:0012506;vesicle membrane;0.00391898074302216!GO:0003682;chromatin binding;0.00400433818107547!GO:0006650;glycerophospholipid metabolic process;0.00410786174519666!GO:0050681;androgen receptor binding;0.00416722463634225!GO:0046467;membrane lipid biosynthetic process;0.00435679698076268!GO:0007264;small GTPase mediated signal transduction;0.00436356778156165!GO:0045859;regulation of protein kinase activity;0.00446384096711585!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00450510170534889!GO:0005657;replication fork;0.00453082042429015!GO:0019371;cyclooxygenase pathway;0.00482211101745805!GO:0030660;Golgi-associated vesicle membrane;0.00482465413914076!GO:0047485;protein N-terminus binding;0.00486991546048926!GO:0018193;peptidyl-amino acid modification;0.00490139522593716!GO:0043549;regulation of kinase activity;0.00496147229319057!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00502572790956646!GO:0030695;GTPase regulator activity;0.00506947221521162!GO:0015631;tubulin binding;0.00517174096331067!GO:0019079;viral genome replication;0.00533069077052625!GO:0006672;ceramide metabolic process;0.00543605245409711!GO:0030659;cytoplasmic vesicle membrane;0.00561780383752759!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00575353811420519!GO:0000339;RNA cap binding;0.00586703033130141!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00629643400711967!GO:0060090;molecular adaptor activity;0.00630119767101865!GO:0009889;regulation of biosynthetic process;0.00636777426845308!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00637267405507834!GO:0007034;vacuolar transport;0.00641018926835358!GO:0000209;protein polyubiquitination;0.00676276542227446!GO:0008139;nuclear localization sequence binding;0.00687154363390844!GO:0019058;viral infectious cycle;0.00716131436555293!GO:0005801;cis-Golgi network;0.0073544411779362!GO:0004261;cathepsin G activity;0.0076271586839987!GO:0006944;membrane fusion;0.00764104175327177!GO:0000082;G1/S transition of mitotic cell cycle;0.00868539300446098!GO:0007041;lysosomal transport;0.00886122270401843!GO:0019372;lipoxygenase pathway;0.00899575288604792!GO:0031625;ubiquitin protein ligase binding;0.00906166780081415!GO:0030867;rough endoplasmic reticulum membrane;0.00918737237063752!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00918737237063752!GO:0001726;ruffle;0.00918737237063752!GO:0031968;organelle outer membrane;0.0099060393973518!GO:0006695;cholesterol biosynthetic process;0.0102407406812176!GO:0005874;microtubule;0.0103095946373134!GO:0046966;thyroid hormone receptor binding;0.0103095946373134!GO:0048518;positive regulation of biological process;0.0105225268136744!GO:0004518;nuclease activity;0.0105290776498596!GO:0031902;late endosome membrane;0.0105580985079828!GO:0030137;COPI-coated vesicle;0.010681277069179!GO:0003714;transcription corepressor activity;0.010681277069179!GO:0032200;telomere organization and biogenesis;0.0107139684651583!GO:0000723;telomere maintenance;0.0107139684651583!GO:0043488;regulation of mRNA stability;0.01073804442851!GO:0043487;regulation of RNA stability;0.01073804442851!GO:0030176;integral to endoplasmic reticulum membrane;0.0110505537400423!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111007170747179!GO:0007052;mitotic spindle organization and biogenesis;0.0111007170747179!GO:0044433;cytoplasmic vesicle part;0.0111015258886323!GO:0048468;cell development;0.0111391936825028!GO:0048487;beta-tubulin binding;0.012016361405969!GO:0019752;carboxylic acid metabolic process;0.0122717679573144!GO:0045792;negative regulation of cell size;0.0123589096857111!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0124069848600517!GO:0019867;outer membrane;0.0127400589888188!GO:0008168;methyltransferase activity;0.0127400589888188!GO:0000188;inactivation of MAPK activity;0.0128498164617283!GO:0006611;protein export from nucleus;0.0128498164617283!GO:0016741;transferase activity, transferring one-carbon groups;0.013724931847498!GO:0006289;nucleotide-excision repair;0.0137322697057189!GO:0030036;actin cytoskeleton organization and biogenesis;0.0137654065065631!GO:0015980;energy derivation by oxidation of organic compounds;0.0140377696292577!GO:0051920;peroxiredoxin activity;0.0141588884393068!GO:0045454;cell redox homeostasis;0.0142015995247464!GO:0000049;tRNA binding;0.0142153007127335!GO:0008017;microtubule binding;0.0144850764350604!GO:0006626;protein targeting to mitochondrion;0.0146713540210714!GO:0005741;mitochondrial outer membrane;0.0147089366302732!GO:0008234;cysteine-type peptidase activity;0.0148110216742944!GO:0016491;oxidoreductase activity;0.0153375849745469!GO:0046519;sphingoid metabolic process;0.0157323798181122!GO:0030308;negative regulation of cell growth;0.0157403915768293!GO:0006633;fatty acid biosynthetic process;0.0157558068873783!GO:0006082;organic acid metabolic process;0.0158787461976637!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0160430766548532!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0160430766548532!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0160430766548532!GO:0022890;inorganic cation transmembrane transporter activity;0.0163947445295782!GO:0048471;perinuclear region of cytoplasm;0.0165457034173572!GO:0007088;regulation of mitosis;0.0165457034173572!GO:0008629;induction of apoptosis by intracellular signals;0.0167282030264267!GO:0032040;small subunit processome;0.0169535848682412!GO:0005135;interleukin-3 receptor binding;0.0174032589075983!GO:0007093;mitotic cell cycle checkpoint;0.017670427086078!GO:0005774;vacuolar membrane;0.017987448346625!GO:0016408;C-acyltransferase activity;0.0188042113616552!GO:0006376;mRNA splice site selection;0.0189609259983627!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0189609259983627!GO:0030968;unfolded protein response;0.0191910617747845!GO:0019377;glycolipid catabolic process;0.020081434111828!GO:0007030;Golgi organization and biogenesis;0.0201032348557462!GO:0005070;SH3/SH2 adaptor activity;0.0201348218569197!GO:0016584;nucleosome positioning;0.0203132133449901!GO:0033116;ER-Golgi intermediate compartment membrane;0.0203566509723035!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0205149725272691!GO:0016044;membrane organization and biogenesis;0.0206067726463741!GO:0006414;translational elongation;0.0206348034276313!GO:0046489;phosphoinositide biosynthetic process;0.0206672336041624!GO:0042393;histone binding;0.0210166632066575!GO:0008033;tRNA processing;0.0212015406151472!GO:0035035;histone acetyltransferase binding;0.0212431166256787!GO:0046394;carboxylic acid biosynthetic process;0.0214450154461575!GO:0016053;organic acid biosynthetic process;0.0214450154461575!GO:0006984;ER-nuclear signaling pathway;0.0228162143403844!GO:0042026;protein refolding;0.0231359814519449!GO:0008094;DNA-dependent ATPase activity;0.0235078974255468!GO:0005637;nuclear inner membrane;0.0235078974255468!GO:0006644;phospholipid metabolic process;0.0236529061459302!GO:0006839;mitochondrial transport;0.023920852159342!GO:0046474;glycerophospholipid biosynthetic process;0.0243414028698097!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0247153515820973!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0251894300067224!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0251894300067224!GO:0007004;telomere maintenance via telomerase;0.025526818281532!GO:0051087;chaperone binding;0.0257190451625199!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0257190451625199!GO:0009165;nucleotide biosynthetic process;0.0257244871841679!GO:0045576;mast cell activation;0.0262997894099117!GO:0000314;organellar small ribosomal subunit;0.0266552283071875!GO:0005763;mitochondrial small ribosomal subunit;0.0266552283071875!GO:0005484;SNAP receptor activity;0.0270714327538369!GO:0030258;lipid modification;0.027268283508922!GO:0002761;regulation of myeloid leukocyte differentiation;0.0273358666013614!GO:0042770;DNA damage response, signal transduction;0.0279079679497169!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0279680319233454!GO:0007010;cytoskeleton organization and biogenesis;0.028437594586933!GO:0031901;early endosome membrane;0.0285038902967513!GO:0000726;non-recombinational repair;0.0286296911285691!GO:0003725;double-stranded RNA binding;0.0287244968400837!GO:0045926;negative regulation of growth;0.0288117488387689!GO:0016311;dephosphorylation;0.0291248117301195!GO:0051053;negative regulation of DNA metabolic process;0.0295411745641017!GO:0006406;mRNA export from nucleus;0.0296027639053851!GO:0005684;U2-dependent spliceosome;0.0296027639053851!GO:0051059;NF-kappaB binding;0.0300648968775796!GO:0045893;positive regulation of transcription, DNA-dependent;0.0303806593862391!GO:0005876;spindle microtubule;0.0304970057503432!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0305470976015336!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0305470976015336!GO:0042802;identical protein binding;0.0315134804695539!GO:0019843;rRNA binding;0.0322604466737823!GO:0051540;metal cluster binding;0.0322604466737823!GO:0051536;iron-sulfur cluster binding;0.0322604466737823!GO:0004003;ATP-dependent DNA helicase activity;0.032297811055027!GO:0044437;vacuolar part;0.0329370227793804!GO:0005020;stem cell factor receptor activity;0.0332021366604118!GO:0000228;nuclear chromosome;0.0335080783529527!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0339358602342329!GO:0008624;induction of apoptosis by extracellular signals;0.0339958793375982!GO:0004576;oligosaccharyl transferase activity;0.0340203723614245!GO:0032508;DNA duplex unwinding;0.0344929672927987!GO:0032392;DNA geometric change;0.0344929672927987!GO:0016601;Rac protein signal transduction;0.0345490731878112!GO:0008632;apoptotic program;0.0354794984911327!GO:0044255;cellular lipid metabolic process;0.0355595840685234!GO:0005869;dynactin complex;0.036190890788365!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0363988571594602!GO:0045892;negative regulation of transcription, DNA-dependent;0.0372540902585063!GO:0000922;spindle pole;0.0376554820026998!GO:0046488;phosphatidylinositol metabolic process;0.0379050823030324!GO:0000781;chromosome, telomeric region;0.0389337196141084!GO:0006266;DNA ligation;0.0391044784651292!GO:0016455;RNA polymerase II transcription mediator activity;0.0398542438346333!GO:0000059;protein import into nucleus, docking;0.0406094663492029!GO:0051098;regulation of binding;0.0407145895167776!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0407520004387959!GO:0008333;endosome to lysosome transport;0.0409639524035728!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0409825098953596!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0409825098953596!GO:0006400;tRNA modification;0.0413073216665341!GO:0051539;4 iron, 4 sulfur cluster binding;0.0415402268618455!GO:0005765;lysosomal membrane;0.0415931611388917!GO:0030133;transport vesicle;0.041910638275215!GO:0005832;chaperonin-containing T-complex;0.0419169666536481!GO:0004278;granzyme B activity;0.0427821911918265!GO:0051287;NAD binding;0.0436273476724726!GO:0045545;syndecan binding;0.0436273476724726!GO:0005895;interleukin-5 receptor complex;0.0436273476724726!GO:0009112;nucleobase metabolic process;0.0437651404655224!GO:0030041;actin filament polymerization;0.044582704892666!GO:0008180;signalosome;0.0446400576815992!GO:0009066;aspartate family amino acid metabolic process;0.0457202814212723!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0461219337911217!GO:0046854;phosphoinositide phosphorylation;0.0461219337911217!GO:0005083;small GTPase regulator activity;0.0461341789199224!GO:0003746;translation elongation factor activity;0.0461701646703682!GO:0031124;mRNA 3'-end processing;0.0462670476749416!GO:0006338;chromatin remodeling;0.0476779569950595!GO:0003702;RNA polymerase II transcription factor activity;0.0489064356987881!GO:0005129;granulocyte macrophage colony-stimulating factor receptor binding;0.0491717000974653!GO:0046479;glycosphingolipid catabolic process;0.0492924401851576!GO:0030149;sphingolipid catabolic process;0.0499105571051695!GO:0009451;RNA modification;0.0499854054462792!GO:0035034;histone acetyltransferase regulator activity;0.0499854054462792
|sample_id=11487
|sample_id=11487
|sample_note=
|sample_note=

Revision as of 19:17, 25 June 2012


Name:Mast cell - stimulated, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueskin
dev stage76 years old adult
sexfemale
age76
cell typemast cell
cell lineNA
companyNA
collaborationSven Guhl (Charite Germany)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0451
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.136
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage1.456
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0949
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.551
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.145
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.409
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.287
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00101
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.174
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.198
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.127
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0.597
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11073

Jaspar motifP-value
MA0002.26.46734e-4
MA0003.10.89
MA0004.10.0476
MA0006.10.642
MA0007.10.058
MA0009.10.38
MA0014.10.958
MA0017.10.24
MA0018.29.07425e-5
MA0019.10.0744
MA0024.10.815
MA0025.10.529
MA0027.10.794
MA0028.15.92924e-7
MA0029.10.0565
MA0030.10.247
MA0031.10.294
MA0035.27.37751e-8
MA0038.10.0127
MA0039.20.198
MA0040.10.22
MA0041.10.121
MA0042.10.49
MA0043.10.0121
MA0046.10.407
MA0047.20.196
MA0048.10.749
MA0050.10.0122
MA0051.10.104
MA0052.10.52
MA0055.10.0804
MA0057.10.679
MA0058.10.114
MA0059.10.995
MA0060.10.433
MA0061.10.154
MA0062.21.45684e-16
MA0065.20.421
MA0066.10.562
MA0067.10.0011
MA0068.10.121
MA0069.10.657
MA0070.10.00289
MA0071.10.57
MA0072.10.549
MA0073.10.399
MA0074.10.781
MA0076.12.82172e-9
MA0077.10.171
MA0078.10.87
MA0079.20.629
MA0080.23.6627e-9
MA0081.11.14301e-4
MA0083.10.599
MA0084.10.724
MA0087.10.97
MA0088.10.608
MA0090.14.24263e-4
MA0091.10.558
MA0092.10.496
MA0093.10.0811
MA0099.21.45921e-4
MA0100.10.156
MA0101.10.0525
MA0102.20.792
MA0103.10.0097
MA0104.20.565
MA0105.10.00714
MA0106.10.0591
MA0107.10.132
MA0108.20.013
MA0111.10.655
MA0112.20.848
MA0113.10.456
MA0114.10.598
MA0115.10.0213
MA0116.10.278
MA0117.10.0132
MA0119.10.363
MA0122.10.632
MA0124.10.662
MA0125.10.755
MA0131.10.938
MA0135.10.606
MA0136.15.56362e-11
MA0137.20.27
MA0138.20.405
MA0139.10.265
MA0140.14.62858e-7
MA0141.10.722
MA0142.10.779
MA0143.10.282
MA0144.10.756
MA0145.10.968
MA0146.10.541
MA0147.10.969
MA0148.10.0346
MA0149.10.642
MA0150.10.113
MA0152.10.723
MA0153.10.117
MA0154.10.39
MA0155.10.492
MA0156.14.36057e-9
MA0157.10.0357
MA0159.10.0647
MA0160.10.172
MA0162.10.00726
MA0163.10.0513
MA0164.10.115
MA0258.10.841
MA0259.10.979



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11073

Novel motifP-value
10.822
100.0826
1000.0362
1010.623
1020.813
1030.116
1040.87
1050.317
1060.478
1070.226
1080.203
1090.243
110.613
1100.495
1110.968
1120.237
1130.167
1140.165
1150.66
1160.262
1170.0296
1180.512
1190.532
120.765
1200.571
1210.162
1220.379
1230.225
1240.588
1250.614
1260.511
1270.745
1280.362
1290.3
130.318
1300.358
1310.728
1320.136
1330.26
1340.323
1350.628
1360.0649
1370.0697
1380.643
1390.459
140.425
1400.631
1410.615
1420.463
1430.105
1440.46
1450.845
1460.47
1470.142
1480.0379
1490.0836
150.219
1500.459
1510.329
1520.853
1530.328
1540.601
1550.0883
1560.794
1570.99
1580.00329
1590.267
160.683
1600.0193
1610.586
1620.0205
1630.872
1640.748
1650.967
1660.308
1670.739
1680.874
1690.412
170.889
180.988
190.743
20.431
200.466
210.0432
220.456
230.473
240.0982
250.11
260.255
270.426
280.119
290.514
30.453
300.232
310.491
320.0186
330.346
340.325
350.732
360.934
370.146
380.845
390.258
40.847
400.00268
410.586
420.57
430.465
440.849
450.545
460.853
470.934
480.615
490.58
50.799
500.403
510.9
520.856
530.851
540.649
550.915
560.71
570.419
580.0813
590.88
60.806
600.733
610.37
620.11
630.0808
640.479
650.282
660.13
670.804
680.405
690.442
70.514
700.561
710.425
720.187
730.602
740.455
750.0856
760.724
770.0487
780.0363
790.653
80.323
800.465
810.525
820.932
830.367
840.847
850.212
860.224
870.925
880.142
890.373
90.888
900.209
910.508
920.821
930.44
940.536
950.0626
960.341
970.854
980.131
990.00333



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11073


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000839 (myeloid lineage restricted progenitor cell)
0000548 (animal cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000134 (mesenchymal cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002191 (granulocytopoietic cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0000037 (hematopoietic stem cell)
0000566 (angioblastic mesenchymal cell)
0000049 (common myeloid progenitor)
0000557 (granulocyte monocyte progenitor cell)
0000097 (mast cell)
0000837 (hematopoietic multipotent progenitor cell)
0000831 (mast cell progenitor)
0002028 (basophil mast progenitor cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0000062 (organ)
0004765 (skeletal element)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
0003081 (lateral plate mesoderm)
0006603 (presumptive mesoderm)
0003061 (blood island)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11487-119E2&oldid=1834657"