FFCP PHASE1:Hg19::chr12:32655110..32655158,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121512 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19125 | |||
|TSSclassifier=strong | |||
|UniProt=F8W1R0 | |||
|association_with_transcript=0bp_to_ENST00000479023,ENST00000546442_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_7_at_FGD4_5end | |||
|id=chr12:32655110..32655158,+ | |||
|ontology_enrichment_celltype=CL:0000147!1.09e-08!14;CL:0000133!3.79e-08!59;CL:0000047!8.61e-08!8;CL:0000148!4.27e-07!10;CL:0000541!4.27e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;3.63e-09;10!CL:0000147;5.20e-09;14!CL:0000540;1.60e-08;6!CL:0000404;1.60e-08;6!CL:0000333;1.06e-07;5!CL:0002319;1.93e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.65e-12,59;CL:0000047,1.43e-11,8;CL:0000221,2.95e-10,72;CL:0000148,4.50e-09,10;CL:0000541,4.50e-09,10;CL:0000147,7.37e-09,14;CL:0000540,1.58e-08,6;CL:0000031,1.58e-08,6;CL:0000404,1.58e-08,6;CL:0000333,1.53e-07,41;CL:0002319,1.83e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.89e-17;82!CL:0000031;1.60e-08;6!CL:0000133;5.30e-07;59 | |||
|ontology_enrichment_disease=DOID:171!2.68e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:169;1.83e-08;6!DOID:171;2.65e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.94e-08,6;DOID:171,3.96e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.89e-49!94;UBERON:0001016!1.89e-49!94;UBERON:0005743!3.64e-45!86;UBERON:0001017!1.44e-42!82;UBERON:0007023!6.36e-41!115;UBERON:0002346!2.68e-38!90;UBERON:0001049!4.52e-38!57;UBERON:0005068!4.52e-38!57;UBERON:0006241!4.52e-38!57;UBERON:0007135!4.52e-38!57;UBERON:0003075!2.22e-36!86;UBERON:0007284!2.22e-36!86;UBERON:0002780!1.28e-33!41;UBERON:0001890!1.28e-33!41;UBERON:0006240!1.28e-33!41;UBERON:0002616!5.98e-33!59;UBERON:0000955!1.23e-32!69;UBERON:0006238!1.23e-32!69;UBERON:0003080!2.28e-32!42;UBERON:0000924!4.88e-32!173;UBERON:0006601!4.88e-32!173;UBERON:0003056!1.43e-31!61;UBERON:0004121!2.96e-30!169;UBERON:0001893!1.17e-27!34;UBERON:0002020!1.57e-27!34;UBERON:0003528!1.57e-27!34;UBERON:0002791!6.67e-27!33;UBERON:0001869!5.93e-26!32;UBERON:0000033!1.00e-21!123;UBERON:0000153!1.31e-21!129;UBERON:0007811!1.31e-21!129;UBERON:0000956!1.38e-20!25;UBERON:0000203!1.38e-20!25;UBERON:0002619!6.10e-19!22;UBERON:0001950!2.96e-17!20;UBERON:0000483!2.19e-12!309;UBERON:0000119!3.33e-12!312;UBERON:0000922!1.17e-09!612;UBERON:0000025!2.31e-09!194;UBERON:0000468!8.07e-09!659;UBERON:0004111!1.36e-08!241;UBERON:0002420!1.37e-08!9;UBERON:0007245!1.37e-08!9;UBERON:0010009!1.37e-08!9;UBERON:0010011!1.37e-08!9;UBERON:0000454!1.37e-08!9;UBERON:0002308!2.33e-08!9;UBERON:0000125!2.33e-08!9;UBERON:0000475!7.64e-08!365;UBERON:0002050!9.27e-08!605;UBERON:0005423!9.27e-08!605;UBERON:0000477!1.10e-07!286;UBERON:0000923!1.70e-07!604;UBERON:0005291!1.70e-07!604;UBERON:0006598!1.70e-07!604;UBERON:0002532!1.70e-07!604;UBERON:0001871!1.72e-07!7;UBERON:0000064!1.78e-07!219;UBERON:0001894!2.49e-07!7;UBERON:0006222!2.49e-07!7;UBERON:0003076!2.92e-07!15;UBERON:0003057!2.92e-07!15;UBERON:0000481!2.97e-07!347;UBERON:0009663!6.27e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.02e-38;41!UBERON:0001890;3.02e-38;41!UBERON:0002791;4.52e-37;32!UBERON:0001893;6.35e-37;34!UBERON:0001869;8.45e-37;32!UBERON:0003528;9.41e-37;34!UBERON:0002020;9.41e-37;34!UBERON:0000073;4.34e-34;53!UBERON:0002616;4.34e-34;53!UBERON:0000956;5.58e-32;25!UBERON:0000203;5.58e-32;25!UBERON:0002619;2.10e-29;22!UBERON:0001950;1.08e-26;20!UBERON:0000955;7.03e-24;68!UBERON:0001016;7.56e-24;83!UBERON:0001017;1.23e-23;75!UBERON:0002420;7.26e-13;9!UBERON:0007245;7.26e-13;9!UBERON:0010009;7.26e-13;9!UBERON:0010011;7.26e-13;9!UBERON:0000454;7.26e-13;9!UBERON:0000125;1.82e-12;9!UBERON:0002308;1.82e-12;9!UBERON:0001894;6.71e-11;7!UBERON:0009663;3.16e-10;7!UBERON:0001871;1.05e-09;6!UBERON:0004732;1.57e-09;13!UBERON:0011216;3.20e-09;132!UBERON:0002298;6.35e-09;6!UBERON:0000200;1.19e-08;6!UBERON:0004733;2.65e-08;12!UBERON:0002028;2.65e-08;12!UBERON:0000349;3.56e-08;5!UBERON:0007023;3.87e-08;114!UBERON:0002021;5.83e-08;5!UBERON:0000013;1.06e-07;5!UBERON:0002410;1.06e-07;5!UBERON:0000922;1.46e-07;49!UBERON:0001872;1.71e-07;5!UBERON:0002784;2.31e-07;4!UBERON:0003296;5.57e-07;4!UBERON:0010133;5.57e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.07e-71,89;UBERON:0001017,5.00e-67,81;UBERON:0001049,1.86e-63,56;UBERON:0005068,1.86e-63,56;UBERON:0006241,1.86e-63,56;UBERON:0007135,1.86e-63,56;UBERON:0000073,1.15e-59,53;UBERON:0002616,1.15e-59,53;UBERON:0002346,3.98e-55,86;UBERON:0003075,1.59e-54,82;UBERON:0007284,1.59e-54,82;UBERON:0002780,3.29e-53,41;UBERON:0001890,3.29e-53,41;UBERON:0003080,3.29e-53,41;UBERON:0006240,3.29e-53,41;UBERON:0000955,9.60e-53,68;UBERON:0006238,9.60e-53,68;UBERON:0010371,1.47e-48,104;UBERON:0003056,2.88e-47,61;UBERON:0004121,1.90e-45,171;UBERON:0000924,1.90e-45,171;UBERON:0006601,1.90e-45,171;UBERON:0001893,1.40e-43,34;UBERON:0003528,2.27e-43,34;UBERON:0002020,2.27e-43,34;UBERON:0002791,5.60e-41,32;UBERON:0001869,7.97e-41,32;UBERON:0000956,3.67e-32,25;UBERON:0000203,3.67e-32,25;UBERON:0010314,1.29e-29,132;UBERON:0002619,1.66e-29,22;UBERON:0011216,2.05e-28,223;UBERON:0001950,8.69e-27,20;UBERON:0007023,7.25e-26,114;UBERON:0002420,7.49e-13,9;UBERON:0007245,7.49e-13,9;UBERON:0010009,7.49e-13,9;UBERON:0010011,7.49e-13,9;UBERON:0000454,7.49e-13,9;UBERON:0000125,1.76e-12,9;UBERON:0002308,1.76e-12,9;UBERON:0003076,1.16e-11,15;UBERON:0003057,1.16e-11,15;UBERON:0000025,6.81e-11,192;UBERON:0001894,7.79e-11,7;UBERON:0006222,7.79e-11,7;UBERON:0000483,2.66e-10,306;UBERON:0009663,3.42e-10,7;UBERON:0000119,5.30e-10,309;UBERON:0001871,1.04e-09,6;UBERON:0004732,1.24e-09,13;UBERON:0002298,5.67e-09,6;UBERON:0000200,1.07e-08,6;UBERON:0004733,2.09e-08,12;UBERON:0002028,2.09e-08,12;UBERON:0007277,2.09e-08,12;UBERON:0000349,3.46e-08,5;UBERON:0002021,5.95e-08,5;UBERON:0000013,1.43e-07,5;UBERON:0002410,1.43e-07,5;UBERON:0001872,1.60e-07,5;UBERON:0002784,2.38e-07,4;UBERON:0004111,5.76e-07,240;UBERON:0003296,6.13e-07,4;UBERON:0010133,6.13e-07,4;UBERON:0000922,6.65e-07,592 | |||
|phase1_expression=0,0.642301571672949,0.704772020479856,0,0,0,0,0.631719873426831,0,0,0,0,0,1.98026164736075,0.994192127183747,0,0,0,0,0,0,0,2.86235987131057,1.23186982565596,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0.144846518960824,0,0,3.68685786939865,0.665188192387692,1.49319135678314,1.70272798147026,0,0.370784442784429,0,0,0,0,0,0,1.19257444420023,0,0.347140501607594,0,0,3.02629846134074,0,1.55050055501597,0.35576626268671,0.66944122552934,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0.625098097988558,0.673588117878509,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0.302714855289863,0,0,0.936480230490962,0.570471821544449,0,0,0,0,0.204154171254893,0,0.516628905878827,0,0,0,0,0,0,0.554128230968366,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,1.34171076742555,0.265059536642971,1.04574548582567,3.83545903556871,0.252320850875628,1.09493207722749,0,0,0,2.78620756819187,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.368965315629341,0.343135620597051,0,0,0,0,0.325808305310325,0,0,4.75314660397815,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.37872730027914,2.53991577168676,3.05590740446622,2.34434894420094,1.71072446022705,1.33675740514321,2.70308752059526,4.57322292208925,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0.144781306667579,1.02738161275192,0.537182889719687,0,0,0,0,17.024339822905,16.9181810014908,13.1459098172208,9.38091085872353,11.4828975297569,0.749007023947182,0,0.828831026872071,2.69921281782108,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0.262248829918848,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,2.05160100093111,0.656029291399411,1.30151357865721,1.54561517471583,0,0,0,0,0,1.83674364755032,0.308097234229289,0.614014698904518,2.34322173223702,0.537101224341368,0,0.170453254832202,2.8490251406956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,1.69458841398202,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56679895773023,0,0,0,0,0,0.343505344755765,0,0,0,0.586164286206121,0,0,0,3.66379164797602,0,0,0.586032717087576,0,0,0,0,0,0,4.97073823883149,9.28418148309384,0,0,0,0.19924798825107,0.276283915531148,5.54252045279407,0,0,0,0,0,0,0.197286811273867,0,0,1.93866549219044,4.63840490809256,3.99227596002388,0,0,0,0,0,0,0,3.79085997398231,2.08349993919951,2.65722415744152,10.0095044059089,3.05163472634166,2.87506075821184,1.77328571372128,3.51016635446356,0,0,0.461701551022782,0.341826167541004,0,0,0,0,0.0915975934018623,0,0,1.09886179476517,0,0,0,0,0,0,0,0.163232808159148,0,0.649165919226273,0,0.353830258013357,1.22206028986725,0,0,0,6.87491556402906,1.60515529459758,6.09087558885882,0,0,0,0.789168805698781,1.20990716048664,13.4672015117416,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.678923115418936,0.617792886840502,5.19755703795225,0,0,5.50803924816145,0,0,0,0,1.29681375438695,0,6.52060991875465,0,0,0,0.271808412147228,0,0,0,2.40168115483916,6.02383667124769,0,0,0,0.558564802544508,1.14580212005842,0.717873024576814,0.599037001496973,0.429226048136571,0.669514372325618,1.5452198671947,0,11.6495949527454,0.157566364614447,0.247247575143499,0.337017719270924,0.492137407573744,0.423366660328922,4.77137813885582,11.0324758950376,1.44677833618517,1.2378549293751,2.9080823662043,0,0,3.9487211827716,0,0.394028536495991,0.891727998294968,0,0.537862017998534,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0.439656701034247,0,2.84422503995411,5.2893040697076,0,0,0.427149650270779,0.471612915298998,0,0,0,0,0,1.08803560673895,0.2506898940227,0.612691153526923,0,0,2.65820453990096,2.19647276823534,8.63817421874849,3.44045517414043,8.76339507141133,5.52657986178313,9.26935854072747,0,7.43080675954074,8.56396000634902,0,0,3.18826262943815,0,0,0,0,0.50313580350515,1.77962244319307,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363697318405119,0.214821114084977,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.40157365831769,0.194860308839388,0,0,0,0,0,0,0,0.344429959321631,0,0,0,0,33.764114024164,8.51816010033786,3.61711666268562,5.02364335683264,2.20652288940233,8.92814664427068,0.123935764259002,1.11728983594649,0,0,0,0,0,4.56027498184863,8.5017945795351,12.2918071474006,4.92279274177812,12.6035848110859,1.45230230174858,6.29755017964219,8.56616521554926,0,0,0,0,0,0,0,0.902523940191087,0,0,0,0,0,3.98471749248528,1.56215619722769,7.02735108104026,3.42445375047097,15.3152946525101,0,0.992422356778588,0.351742488719241,0,40.7133395267498,88.1063352213319,2.42786241694653,5.00856820972855,0.177404740325278,0,0,5.02976024028555,3.81482086664525,0,0,0.39246546425257,7.38443272605209,0,6.39211104356647,0,0,12.4369186867382,9.63883031569632,0,8.69291361512897,0,0.207216164163037,0,0,0.430227358820278,0.118332000730565,0.170426809518315,0.423387050190929,0,0,0,0,0,2.56027642462766,7.12171720906684,3.90118666053739,3.4794432940146,2.4285549652957,1.87151570769685,2.78531085225916,0.356760272332706,0,12.5332189089789,0,0.231522474323834,1.5299169235277,0.470317296361523,0.490296643507811,1.17838273550813,4.71140321075869,4.1586496045792,3.3812458206672,0,0,0.0644578879735772,0,0,0,0,2.92134555298607,0,6.59362082496676,0,1.8357702351547,14.3995727812325,3.1741610430924,0,0.462175628631418,0,0.504665699340316,1.09265571963696,0,0,0,0.0918948995348449,0,1.89446745545599,0.267964130156178,4.1458471972939,8.89523764412299,1.0661699095049,2.14257988317366,0.0645889098360061,0,0,0.0636471582781649,0.202117188958219,0.217716747896961,1.71116650542641,0.0673520530145875,0.143444410785353,2.32862249582209,0,0,0,0,0,0.366724332548599,1.62758471326295,1.99727032255654,0.201273793591026,0 | |||
|short_description=p7@FGD4 | |||
}} |
Revision as of 12:56, 11 January 2014
Short description: | p7@FGD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_FGD4_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000479023, ENST00000546442_5end |
EntrezGene: | FGD4 |
HGNC: | 19125 |
UniProt: | F8W1R0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.65e-12 | 59 |
neuronal stem cell | 1.43e-11 | 8 |
ectodermal cell | 2.95e-10 | 72 |
melanocyte | 4.50e-09 | 10 |
melanoblast | 4.50e-09 | 10 |
pigment cell | 7.37e-09 | 14 |
neuron | 1.58e-08 | 6 |
neuroblast | 1.58e-08 | 6 |
electrically signaling cell | 1.58e-08 | 6 |
migratory neural crest cell | 1.53e-07 | 41 |
neural cell | 1.83e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.94e-08 | 6 |
neuroectodermal tumor | 3.96e-08 | 10 |