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Coexpression cluster:C3158

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Full id: C3158_acute_CD133_granulocyte_brain_cerebellum_diencephalon_CD34



Phase1 CAGE Peaks

  Short description
Hg19::chr11:47615858..47615865,- p9@C1QTNF4
Hg19::chr11:47615871..47615887,- p5@C1QTNF4
Hg19::chr11:47615898..47615948,- p2@C1QTNF4


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


No GOStat results

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
neuron4.99e-076
neuroblast4.99e-076
electrically signaling cell4.99e-076
Uber Anatomy
Ontology termp-valuen
neural tube7.98e-6756
neural rod7.98e-6756
future spinal cord7.98e-6756
neural keel7.98e-6756
central nervous system5.39e-6681
regional part of nervous system1.15e-6153
regional part of brain1.15e-6153
nervous system8.65e-6089
brain3.36e-5468
future brain3.36e-5468
regional part of forebrain3.65e-4741
forebrain3.65e-4741
anterior neural tube3.65e-4741
future forebrain3.65e-4741
neural plate8.27e-4582
presumptive neural plate8.27e-4582
brain grey matter3.16e-4234
gray matter3.16e-4234
neurectoderm5.08e-4286
telencephalon6.93e-4234
cerebral hemisphere3.69e-3932
regional part of telencephalon1.08e-3832
adult organism2.07e-38114
ecto-epithelium3.18e-35104
regional part of cerebral cortex4.02e-3522
neocortex4.14e-3220
pre-chordal neural plate6.92e-3261
cerebral cortex2.96e-3025
pallium2.96e-3025
structure with developmental contribution from neural crest9.31e-30132
ectoderm-derived structure1.97e-27171
ectoderm1.97e-27171
presumptive ectoderm1.97e-27171
organ system subdivision3.73e-25223
posterior neural tube5.08e-2015
chordal neural plate5.08e-2015
segmental subdivision of hindbrain3.65e-1512
hindbrain3.65e-1512
presumptive hindbrain3.65e-1512
tube1.09e-14192
segmental subdivision of nervous system8.44e-1413
neural nucleus2.65e-139
nucleus of brain2.65e-139
basal ganglion6.73e-139
nuclear complex of neuraxis6.73e-139
aggregate regional part of brain6.73e-139
collection of basal ganglia6.73e-139
cerebral subcortex6.73e-139
temporal lobe8.15e-136
brainstem4.82e-126
anatomical cluster7.92e-12373
gyrus2.71e-116
anatomical conduit1.33e-10240
regional part of metencephalon2.18e-109
metencephalon2.18e-109
future metencephalon2.18e-109
parietal lobe5.87e-105
telencephalic nucleus7.81e-107
limbic system1.95e-095
epithelium4.99e-09306
cell layer8.64e-09309
corpus striatum1.26e-084
striatum1.26e-084
ventral part of telencephalon1.26e-084
future corpus striatum1.26e-084
multi-tissue structure2.54e-07342
embryo4.09e-07592
pons4.55e-073
caudate-putamen6.74e-073
dorsal striatum6.74e-073
diencephalon8.61e-077
future diencephalon8.61e-077


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.0927
MA0004.10.826076
MA0006.10.639288
MA0007.10.804807
MA0009.11.3275
MA0014.11.24048
MA0017.10.686276
MA0019.10.990656
MA0024.11.21731
MA0025.11.46617
MA0027.12.95767
MA0028.10.658629
MA0029.11.23771
MA0030.11.22561
MA0031.11.15713
MA0038.10.94098
MA0040.11.24388
MA0041.10.847069
MA0042.10.810843
MA0043.11.32783
MA0046.11.31611
MA0048.10.341392
MA0050.10.81185
MA0051.10.936307
MA0052.11.24796
MA0055.11.06172
MA0056.10
MA0057.14.3182
MA0058.10.716037
MA0059.10.714521
MA0060.10.492218
MA0061.10.456531
MA0063.10
MA0066.10.941452
MA0067.11.65513
MA0068.11.04561
MA0069.11.31207
MA0070.11.30033
MA0071.12.0778
MA0072.11.29561
MA0073.10.407479
MA0074.10.935474
MA0076.10.734647
MA0077.11.28751
MA0078.11.04495
MA0081.10.714712
MA0083.11.33535
MA0084.11.84562
MA0087.11.29304
MA0088.12.84236
MA0089.10
MA0090.10.751469
MA0091.10.829044
MA0092.10.785956
MA0093.10.642957
MA0095.10
MA0098.10
MA0100.10.956299
MA0101.10.646932
MA0103.10.628063
MA0105.10.31555
MA0106.10.986396
MA0107.10.556367
MA0108.21.15387
MA0109.10
MA0111.10.767139
MA0113.11.00436
MA0114.11.35563
MA0115.11.57693
MA0116.10.560723
MA0117.11.36676
MA0119.10.695578
MA0122.11.39371
MA0124.11.53432
MA0125.11.44766
MA0130.10
MA0131.11.06461
MA0132.10
MA0133.10
MA0135.11.35921
MA0136.10.948776
MA0139.10.440097
MA0140.10.894983
MA0141.11.6959
MA0142.11.12317
MA0143.11.00455
MA0144.10.531867
MA0145.10.273764
MA0146.10.707589
MA0147.10.565108
MA0148.10.854239
MA0149.10.884158
MA0062.20.449458
MA0035.20.894194
MA0039.20.432958
MA0138.21.04628
MA0002.20.476938
MA0137.20.666381
MA0104.20.491226
MA0047.20.973066
MA0112.20.264678
MA0065.22.97249
MA0150.10.744617
MA0151.10
MA0152.10.902317
MA0153.11.43021
MA0154.10.312019
MA0155.11.31345
MA0156.10.669101
MA0157.11.09377
MA0158.10
MA0159.11.38935
MA0160.13.34615
MA0161.10
MA0162.11.43223
MA0163.11.2663
MA0164.11.01792
MA0080.20.643061
MA0018.20.987913
MA0099.20.902716
MA0079.25.16052
MA0102.21.88331
MA0258.10.519674
MA0259.10.575594
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data


This analysis result is provided for C0 - C305 clusters.