FFCP PHASE1:Hg19::chr3:147141109..147141123,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:147141109..147141123,- | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_at_chr3:147141109..147141123,- | |description=CAGE_peak_at_chr3:147141109..147141123,- | ||
|id=chr3:147141109..147141123,- | |id=chr3:147141109..147141123,- | ||
|ontology_enrichment_celltype=CL:0002603!2.36e-18!3;CL:0000064!1.20e-17!3;CL:0005012!1.20e-17!3;CL:0000067!1.20e-17!3;CL:0002304!1.20e-17!3;CL:0000128!1.24e-13!7;CL:0000126!1.24e-13!7;CL:0000127!1.24e-13!7;CL:0002453!1.24e-13!7;CL:0002575!1.92e-12!2;CL:0000708!6.92e-09!3 | |ontology_enrichment_celltype=CL:0002603!2.36e-18!3;CL:0000064!1.20e-17!3;CL:0005012!1.20e-17!3;CL:0000067!1.20e-17!3;CL:0002304!1.20e-17!3;CL:0000128!1.24e-13!7;CL:0000126!1.24e-13!7;CL:0000127!1.24e-13!7;CL:0002453!1.24e-13!7;CL:0002575!1.92e-12!2;CL:0000708!6.92e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0002549;1.21e-13;2!CL:0000708;1.53e-09;3!CL:0002590;1.53e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,1.37e-13,2;CL:0002590,1.30e-09,3;CL:0000708,1.81e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.71e-75;3!UBERON:0005425;7.62e-26;1!UBERON:0003056;1.53e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004732!4.99e-44!13;UBERON:0004733!1.22e-38!12;UBERON:0002028!1.22e-38!12;UBERON:0007277!1.22e-38!12;UBERON:0002616!7.33e-38!59;UBERON:0003075!8.36e-36!86;UBERON:0007284!8.36e-36!86;UBERON:0002037!9.39e-36!6;UBERON:0006215!9.39e-36!6;UBERON:0002346!5.26e-34!90;UBERON:0002680!9.51e-32!9;UBERON:0001895!9.51e-32!9;UBERON:0010092!9.51e-32!9;UBERON:0001049!1.41e-31!57;UBERON:0005068!1.41e-31!57;UBERON:0006241!1.41e-31!57;UBERON:0007135!1.41e-31!57;UBERON:0001017!1.57e-31!82;UBERON:0000955!2.65e-31!69;UBERON:0006238!2.65e-31!69;UBERON:0003076!1.29e-30!15;UBERON:0003057!1.29e-30!15;UBERON:0005743!7.09e-30!86;UBERON:0000073!2.27e-29!94;UBERON:0001016!2.27e-29!94;UBERON:0004121!2.05e-24!169;UBERON:0000924!9.96e-24!173;UBERON:0006601!9.96e-24!173;UBERON:0000033!1.59e-23!123;UBERON:0000153!3.28e-22!129;UBERON:0007811!3.28e-22!129;UBERON:0001778!1.20e-17!3;UBERON:0001775!1.20e-17!3;UBERON:0003056!1.02e-14!61;UBERON:0000488!2.24e-13!4;UBERON:0002200!4.06e-13!11;UBERON:0006876!4.06e-13!11;UBERON:0005162!1.36e-12!2;UBERON:0000122!1.36e-12!2;UBERON:0007023!2.76e-12!115;UBERON:0002298!1.12e-11!8;UBERON:0002780!1.74e-11!41;UBERON:0001890!1.74e-11!41;UBERON:0006240!1.74e-11!41;UBERON:0003080!3.53e-11!42;UBERON:0000119!1.04e-10!312;UBERON:0000349!1.69e-10!5;UBERON:0002791!2.94e-09!33;UBERON:0002203!4.39e-09!6;UBERON:0001768!4.39e-09!6;UBERON:0001893!5.81e-09!34;UBERON:0000064!5.90e-09!219;UBERON:0000063!6.45e-09!97;UBERON:0000483!6.80e-09!309;UBERON:0003210!6.92e-09!3;UBERON:0001896!9.45e-09!3;UBERON:0005290!9.45e-09!3;UBERON:0010096!9.45e-09!3;UBERON:0007625!2.38e-08!11;UBERON:0000025!1.63e-07!194;UBERON:0000941!1.86e-07!1;UBERON:0004904!1.86e-07!1;UBERON:0002464!1.86e-07!1;UBERON:0001021!1.86e-07!1;UBERON:0001785!1.86e-07!1;UBERON:0000477!2.35e-07!286;UBERON:0002363!3.20e-07!1;UBERON:0007647!3.20e-07!1;UBERON:0010115!3.20e-07!1;UBERON:0002020!6.40e-07!34;UBERON:0003528!6.40e-07!34;UBERON:0002038!6.88e-07!1;UBERON:0009661!6.88e-07!1;UBERON:0002336!8.18e-07!1;UBERON:0001018!8.18e-07!1;UBERON:0002473!8.18e-07!1;UBERON:0005340!8.18e-07!1;UBERON:0002316!8.18e-07!1;UBERON:0003544!8.18e-07!1;UBERON:0001020!8.18e-07!1;UBERON:0005970!8.18e-07!1;UBERON:0002437!8.18e-07!1;UBERON:0001882!8.67e-07!1;UBERON:0005403!8.67e-07!1 | |ontology_enrichment_uberon=UBERON:0004732!4.99e-44!13;UBERON:0004733!1.22e-38!12;UBERON:0002028!1.22e-38!12;UBERON:0007277!1.22e-38!12;UBERON:0002616!7.33e-38!59;UBERON:0003075!8.36e-36!86;UBERON:0007284!8.36e-36!86;UBERON:0002037!9.39e-36!6;UBERON:0006215!9.39e-36!6;UBERON:0002346!5.26e-34!90;UBERON:0002680!9.51e-32!9;UBERON:0001895!9.51e-32!9;UBERON:0010092!9.51e-32!9;UBERON:0001049!1.41e-31!57;UBERON:0005068!1.41e-31!57;UBERON:0006241!1.41e-31!57;UBERON:0007135!1.41e-31!57;UBERON:0001017!1.57e-31!82;UBERON:0000955!2.65e-31!69;UBERON:0006238!2.65e-31!69;UBERON:0003076!1.29e-30!15;UBERON:0003057!1.29e-30!15;UBERON:0005743!7.09e-30!86;UBERON:0000073!2.27e-29!94;UBERON:0001016!2.27e-29!94;UBERON:0004121!2.05e-24!169;UBERON:0000924!9.96e-24!173;UBERON:0006601!9.96e-24!173;UBERON:0000033!1.59e-23!123;UBERON:0000153!3.28e-22!129;UBERON:0007811!3.28e-22!129;UBERON:0001778!1.20e-17!3;UBERON:0001775!1.20e-17!3;UBERON:0003056!1.02e-14!61;UBERON:0000488!2.24e-13!4;UBERON:0002200!4.06e-13!11;UBERON:0006876!4.06e-13!11;UBERON:0005162!1.36e-12!2;UBERON:0000122!1.36e-12!2;UBERON:0007023!2.76e-12!115;UBERON:0002298!1.12e-11!8;UBERON:0002780!1.74e-11!41;UBERON:0001890!1.74e-11!41;UBERON:0006240!1.74e-11!41;UBERON:0003080!3.53e-11!42;UBERON:0000119!1.04e-10!312;UBERON:0000349!1.69e-10!5;UBERON:0002791!2.94e-09!33;UBERON:0002203!4.39e-09!6;UBERON:0001768!4.39e-09!6;UBERON:0001893!5.81e-09!34;UBERON:0000064!5.90e-09!219;UBERON:0000063!6.45e-09!97;UBERON:0000483!6.80e-09!309;UBERON:0003210!6.92e-09!3;UBERON:0001896!9.45e-09!3;UBERON:0005290!9.45e-09!3;UBERON:0010096!9.45e-09!3;UBERON:0007625!2.38e-08!11;UBERON:0000025!1.63e-07!194;UBERON:0000941!1.86e-07!1;UBERON:0004904!1.86e-07!1;UBERON:0002464!1.86e-07!1;UBERON:0001021!1.86e-07!1;UBERON:0001785!1.86e-07!1;UBERON:0000477!2.35e-07!286;UBERON:0002363!3.20e-07!1;UBERON:0007647!3.20e-07!1;UBERON:0010115!3.20e-07!1;UBERON:0002020!6.40e-07!34;UBERON:0003528!6.40e-07!34;UBERON:0002038!6.88e-07!1;UBERON:0009661!6.88e-07!1;UBERON:0002336!8.18e-07!1;UBERON:0001018!8.18e-07!1;UBERON:0002473!8.18e-07!1;UBERON:0005340!8.18e-07!1;UBERON:0002316!8.18e-07!1;UBERON:0003544!8.18e-07!1;UBERON:0001020!8.18e-07!1;UBERON:0005970!8.18e-07!1;UBERON:0002437!8.18e-07!1;UBERON:0001882!8.67e-07!1;UBERON:0005403!8.67e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0004732;1.00e-47;13!UBERON:0002037;4.90e-38;6!UBERON:0004733;1.58e-33;12!UBERON:0002028;1.58e-33;12!UBERON:0000941;7.62e-26;1!UBERON:0001785;7.62e-26;1!UBERON:0002464;7.62e-26;1!UBERON:0004904;7.62e-26;1!UBERON:0001021;7.62e-26;1!UBERON:0002680;1.16e-25;9!UBERON:0001895;1.16e-25;9!UBERON:0005284;1.21e-20;5!UBERON:0003714;1.21e-13;2!UBERON:0005162;1.21e-13;2!UBERON:0000122;1.21e-13;2!UBERON:0005629;1.21e-13;2!UBERON:0005358;1.21e-13;2!UBERON:0001886;1.21e-13;2!UBERON:0004086;1.21e-13;2!UBERON:0005282;1.21e-13;2!UBERON:0005281;1.21e-13;2!UBERON:0006876;6.06e-10;11!UBERON:0001896;1.53e-09;3!UBERON:0003210;1.53e-09;3!UBERON:0005290;1.53e-09;3!UBERON:0001016;3.66e-08;83!UBERON:0000955;5.52e-07;68!UBERON:0001017;8.16e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004732,9.09e-48,13;UBERON:0002037,4.90e-38,6;UBERON:0006215,4.90e-38,6;UBERON:0004733,1.58e-33,12;UBERON:0002028,1.58e-33,12;UBERON:0007277,1.58e-33,12;UBERON:0003076,5.93e-27,15;UBERON:0003057,5.93e-27,15;UBERON:0000941,5.93e-26,1;UBERON:0001785,5.93e-26,1;UBERON:0002464,5.93e-26,1;UBERON:0004904,5.93e-26,1;UBERON:0001021,5.93e-26,1;UBERON:0003902,5.93e-26,1;UBERON:0005425,5.93e-26,1;UBERON:0002680,1.17e-25,9;UBERON:0001895,1.17e-25,9;UBERON:0010092,1.17e-25,9;UBERON:0005284,1.10e-20,5;UBERON:0003714,1.07e-13,2;UBERON:0005162,1.07e-13,2;UBERON:0000122,1.07e-13,2;UBERON:0005629,1.37e-13,2;UBERON:0005358,1.37e-13,2;UBERON:0001886,1.37e-13,2;UBERON:0004086,1.37e-13,2;UBERON:0005282,1.37e-13,2;UBERON:0005281,1.37e-13,2;UBERON:0001016,3.00e-13,89;UBERON:0000955,6.83e-13,68;UBERON:0006238,6.83e-13,68;UBERON:0001017,6.88e-11,81;UBERON:0006876,5.79e-10,11;UBERON:0001896,1.54e-09,3;UBERON:0005290,1.54e-09,3;UBERON:0010096,1.54e-09,3;UBERON:0003210,1.81e-09,3;UBERON:0000073,8.01e-08,53;UBERON:0002616,8.01e-08,53;UBERON:0003075,9.83e-08,82;UBERON:0007284,9.83e-08,82;UBERON:0001781,1.69e-07,4;UBERON:0001049,1.98e-07,56;UBERON:0005068,1.98e-07,56;UBERON:0006241,1.98e-07,56;UBERON:0007135,1.98e-07,56;UBERON:0002346,2.20e-07,86;UBERON:0004121,5.65e-07,171;UBERON:0000924,5.65e-07,171;UBERON:0006601,5.65e-07,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.612002073732759,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567208902984407,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21085942115945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86079184679834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2581736317083,21.2312179067951,2.65992857058193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22021956690538,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.612002073732759,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567208902984407,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21085942115945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86079184679834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2581736317083,21.2312179067951,2.65992857058193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22021956690538,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.203909198930495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr3:147141109..147141123,- | |short_description=p@chr3:147141109..147141123,- | ||
}} | }} |
Latest revision as of 16:46, 29 July 2015
Short description: | p@chr3:147141109..147141123, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147141109..147141123, - |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 1.37e-13 | 2 |
smooth muscle cell of the brain vasculature | 1.30e-09 | 3 |
leptomeningeal cell | 1.81e-09 | 3 |