FFCP PHASE1:Hg19::chr5:31193785..31193810,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:31193785..31193810,+ to FFCP PHASE1:Hg19::chr5:31193785..31193810,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1004 | |EntrezGene=1004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1765 | |HGNC=1765 | ||
|TSSclassifier=strong | |||
|UniProt=P55285 | |UniProt=P55285 | ||
|association_with_transcript=0bp_to_uc003jhc.1,uc003jhd.1,uc003jhe.1_5end | |||
|cluster_id=chr5:31193785..31193810,+ | |||
|coexpression_cluster_id=C1958 | |||
|description=CAGE_peak_2_at_CDH6_5end | |||
|id=chr5:31193785..31193810,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.09e-17!32;CL:0000192!4.12e-16!42;CL:0000514!4.12e-16!42;CL:0000183!5.77e-15!59;CL:0000187!5.10e-14!54;CL:0000680!2.69e-13!57;CL:0000056!2.69e-13!57;CL:0000355!2.69e-13!57;CL:0000393!2.52e-12!60;CL:0000211!2.52e-12!60;CL:0000055!3.67e-12!180;CL:0002494!3.00e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.82e-19;32!CL:0000192;1.43e-10;43!CL:0002494;3.56e-08;16!CL:0002539;1.48e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.33e-19,32;CL:0000192,7.86e-14,43;CL:0000514,7.86e-14,43;CL:0000187,1.46e-10,55;CL:0000680,8.34e-10,58;CL:0000056,8.34e-10,58;CL:0000355,8.34e-10,58;CL:0000393,3.18e-09,61;CL:0000211,3.18e-09,61;CL:0002494,4.03e-08,16;CL:0002539,1.77e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.43e-10;43!UBERON:0005795;4.50e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.57e-26!347;UBERON:0000475!6.68e-24!365;UBERON:0000477!8.11e-24!286;UBERON:0000025!3.53e-23!194;UBERON:0004111!1.39e-20!241;UBERON:0000119!9.71e-20!312;UBERON:0000483!2.83e-19!309;UBERON:0005743!1.48e-17!86;UBERON:0002616!1.94e-17!59;UBERON:0003075!3.47e-17!86;UBERON:0007284!3.47e-17!86;UBERON:0000073!8.38e-17!94;UBERON:0001016!8.38e-17!94;UBERON:0001017!1.97e-16!82;UBERON:0000955!3.74e-16!69;UBERON:0006238!3.74e-16!69;UBERON:0001049!7.90e-16!57;UBERON:0005068!7.90e-16!57;UBERON:0006241!7.90e-16!57;UBERON:0007135!7.90e-16!57;UBERON:0007023!1.08e-15!115;UBERON:0002346!1.56e-15!90;UBERON:0000033!1.74e-15!123;UBERON:0000153!2.62e-15!129;UBERON:0007811!2.62e-15!129;UBERON:0002385!3.24e-14!63;UBERON:0001015!3.24e-14!63;UBERON:0000383!3.24e-14!63;UBERON:0001134!5.73e-14!61;UBERON:0002036!5.73e-14!61;UBERON:0003082!5.73e-14!61;UBERON:0003056!2.11e-13!61;UBERON:0001637!6.52e-13!42;UBERON:0003509!6.52e-13!42;UBERON:0004572!6.52e-13!42;UBERON:0003080!1.38e-12!42;UBERON:0004573!2.57e-12!33;UBERON:0004571!2.57e-12!33;UBERON:0002780!2.72e-12!41;UBERON:0001890!2.72e-12!41;UBERON:0006240!2.72e-12!41;UBERON:0000468!3.08e-12!659;UBERON:0000914!5.50e-12!83;UBERON:0002329!5.50e-12!83;UBERON:0003077!5.50e-12!83;UBERON:0003059!5.50e-12!83;UBERON:0007282!5.50e-12!83;UBERON:0009618!5.50e-12!83;UBERON:0007285!5.50e-12!83;UBERON:0005256!5.57e-12!143;UBERON:0003914!2.55e-11!118;UBERON:0004290!4.64e-11!70;UBERON:0002020!6.11e-11!34;UBERON:0003528!6.11e-11!34;UBERON:0001893!6.29e-11!34;UBERON:0004872!9.08e-11!84;UBERON:0001869!1.28e-10!32;UBERON:0002791!1.37e-10!33;UBERON:0003103!1.99e-10!69;UBERON:0004121!2.45e-10!169;UBERON:0002100!2.62e-10!216;UBERON:0000922!3.23e-10!612;UBERON:0000924!1.40e-09!173;UBERON:0006601!1.40e-09!173;UBERON:0000467!1.81e-09!625;UBERON:0000480!2.62e-09!626;UBERON:0000062!3.24e-09!511;UBERON:0002050!8.02e-09!605;UBERON:0005423!8.02e-09!605;UBERON:0000923!1.45e-08!604;UBERON:0005291!1.45e-08!604;UBERON:0006598!1.45e-08!604;UBERON:0002532!1.45e-08!604;UBERON:0000956!1.71e-08!25;UBERON:0000203!1.71e-08!25;UBERON:0007100!2.65e-08!27;UBERON:0000948!3.20e-08!24;UBERON:0005498!3.20e-08!24;UBERON:0004140!3.20e-08!24;UBERON:0009881!3.20e-08!24;UBERON:0004141!3.20e-08!24;UBERON:0003084!3.20e-08!24;UBERON:0007005!3.20e-08!24;UBERON:0004139!3.20e-08!24;UBERON:0004291!3.20e-08!24;UBERON:0000064!3.33e-08!219;UBERON:0002049!4.95e-08!79;UBERON:0007798!4.95e-08!79;UBERON:0002619!8.95e-08!22;UBERON:0001981!1.02e-07!60;UBERON:0007500!1.02e-07!60;UBERON:0004537!1.02e-07!60;UBERON:0006965!1.02e-07!60;UBERON:0000486!1.05e-07!82;UBERON:0001009!1.13e-07!113;UBERON:0004535!2.07e-07!110;UBERON:0001950!2.20e-07!20;UBERON:0003104!8.02e-07!238;UBERON:0009142!8.02e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.93e-13;33!UBERON:0004571;5.93e-13;33!UBERON:0001869;6.89e-11;32!UBERON:0003528;9.41e-11;34!UBERON:0002020;9.41e-11;34!UBERON:0002791;1.06e-10;32!UBERON:0001637;1.10e-10;42!UBERON:0003509;1.10e-10;42!UBERON:0004572;1.10e-10;42!UBERON:0001893;1.17e-10;34!UBERON:0002780;9.48e-10;41!UBERON:0001890;9.48e-10;41!UBERON:0000956;1.69e-09;25!UBERON:0000203;1.69e-09;25!UBERON:0000073;3.16e-09;53!UBERON:0002616;3.16e-09;53!UBERON:0002619;1.24e-08;22!UBERON:0000948;1.40e-08;22!UBERON:0001017;1.92e-08;75!UBERON:0000955;2.23e-08;68!UBERON:0001950;3.35e-08;20!UBERON:0007100;5.32e-08;25!UBERON:0004237;1.48e-07;10!UBERON:0004695;1.48e-07;10!UBERON:0002111;1.48e-07;10!UBERON:0004178;1.48e-07;10!UBERON:0001016;5.22e-07;83!UBERON:0000947;8.57e-07;21!UBERON:0010191;8.57e-07;21 | |||
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| ||
|short_description=p2@CDH6 | |||
}} | }} |
Latest revision as of 14:39, 17 September 2015
Short description: | p2@CDH6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CDH6_5end |
Coexpression cluster: | C1958_mesodermal_Lens_Smooth_Ciliary_Fibroblast_teratocarcinoma_leiomyoma |
Association with transcript: | 0bp_to_uc003jhc.1, uc003jhd.1, uc003jhe.1_5end |
EntrezGene: | CDH6 |
HGNC: | 1765 |
UniProt: | P55285 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.33e-19 | 32 |
smooth muscle cell | 7.86e-14 | 43 |
smooth muscle myoblast | 7.86e-14 | 43 |
muscle cell | 1.46e-10 | 55 |
muscle precursor cell | 8.34e-10 | 58 |
myoblast | 8.34e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.34e-10 | 58 |
electrically responsive cell | 3.18e-09 | 61 |
electrically active cell | 3.18e-09 | 61 |
cardiocyte | 4.03e-08 | 16 |
aortic smooth muscle cell | 1.77e-07 | 10 |