FFCP PHASE1:Hg19::chr16:89989741..89989759,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:89989741..89989759,+
|short_description=p1@TUBB3
|description=CAGE_peak_1_at_TUBB3_5end
|association_with_transcript=0bp_to_ENST00000553656,ENST0000055411...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10381 | |EntrezGene=10381 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20772 | |HGNC=20772 | ||
|TSSclassifier=strong | |||
|UniProt=G3V4U2,G3V5W4,G3V3R4,G3V3W7,Q13509,A8K854 | |UniProt=G3V4U2,G3V5W4,G3V3R4,G3V3W7,Q13509,A8K854 | ||
|association_with_transcript=0bp_to_ENST00000553656,ENST00000554116,ENST00000554927,ENST00000555399,ENST00000555576,ENST00000556536,ENST00000557262,ENST00000557490,uc002fpg.1,uc002fph.1,uc002fpi.1,uc010cja.1_5end | |||
|cluster_id=chr16:89989741..89989759,+ | |||
|coexpression_cluster_id=C3284 | |||
|description=CAGE_peak_1_at_TUBB3_5end | |||
|id=chr16:89989741..89989759,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.48e-33!180;CL:0002321!5.72e-30!248;CL:0000220!6.74e-30!246;CL:0000222!3.51e-20!119;CL:0000393!2.20e-18!60;CL:0000211!2.20e-18!60;CL:0000183!2.19e-17!59;CL:0000680!1.07e-16!57;CL:0000056!1.07e-16!57;CL:0000355!1.07e-16!57;CL:0000187!1.23e-15!54;CL:0000192!2.17e-14!42;CL:0000514!2.17e-14!42;CL:0000359!4.51e-12!32;CL:0000221!2.76e-11!71;CL:0000133!1.00e-10!59;CL:0000066!6.40e-10!254;CL:0000548!9.69e-09!679;CL:0000004!9.69e-09!679;CL:0000255!9.69e-09!679;CL:1000449!1.62e-08!16;CL:0002319!1.92e-08!25;CL:0000333!4.88e-08!41;CL:0000012!5.09e-08!682;CL:0000144!5.20e-08!625;CL:0000057!5.64e-08!75;CL:1000507!1.15e-07!12;CL:1000494!1.15e-07!12;CL:1000497!1.17e-07!18;CL:0002518!1.17e-07!18;CL:0002371!2.06e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.30e-11;32!CL:0000192;1.51e-10;43!CL:0000393;2.11e-09;61!CL:0000211;2.11e-09;61!CL:0000187;3.10e-09;55!CL:0002319;1.77e-08;25!CL:1000449;1.81e-08;15!CL:1000507;1.18e-07;10!CL:1000494;1.18e-07;10!CL:1000497;1.45e-07;17!CL:0002518;1.45e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.05e-30,250;CL:0000222,9.34e-21,121;CL:0000393,1.35e-18,61;CL:0000211,1.35e-18,61;CL:0000680,6.62e-17,58;CL:0000056,6.62e-17,58;CL:0000355,6.62e-17,58;CL:0000187,7.69e-16,55;CL:0000192,1.42e-14,43;CL:0000514,1.42e-14,43;CL:0000359,4.14e-12,32;CL:0000221,1.14e-11,72;CL:0000133,9.31e-11,59;CL:0000066,7.44e-10,253;CL:0002319,1.82e-08,25;CL:1000449,1.82e-08,15;CL:0000333,4.63e-08,41;CL:0000057,9.40e-08,76;CL:1000507,1.18e-07,10;CL:1000494,1.18e-07,10;CL:1000497,1.46e-07,17;CL:0002518,1.46e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;1.51e-10;43!CL:0000355;2.69e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003914;2.25e-10;74!UBERON:0001637;6.83e-10;42!UBERON:0003509;6.83e-10;42!UBERON:0004572;6.83e-10;42!UBERON:0007500;3.83e-09;56!UBERON:0001981;3.83e-09;56!UBERON:0004537;3.83e-09;56!UBERON:0004573;4.91e-09;33!UBERON:0004571;4.91e-09;33!UBERON:0006555;1.81e-08;15!UBERON:0004819;1.81e-08;15!UBERON:0001285;1.81e-08;15!UBERON:0007684;1.81e-08;15!UBERON:0002049;7.77e-08;75!UBERON:0007798;7.77e-08;75!UBERON:0004211;1.18e-07;10!UBERON:0009773;1.18e-07;10!UBERON:0001231;1.18e-07;10!UBERON:0004810;1.18e-07;10!UBERON:0000956;2.54e-07;25!UBERON:0000203;2.54e-07;25!UBERON:0001869;3.50e-07;32!UBERON:0000055;4.38e-07;65!UBERON:0010371;4.76e-07;31!UBERON:0003528;5.80e-07;34!UBERON:0002020;5.80e-07;34 | |||
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| ||
|short_description=p1@TUBB3 | |||
}} | }} |
Latest revision as of 13:01, 18 September 2015
Short description: | p1@TUBB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBB3_5end |
Coexpression cluster: | C3284_Neurons_Neural_brain_duodenum_occipital_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000553656, ENST00000554116, ENST00000554927, ENST00000555399, ENST00000555576, ENST00000556536, ENST00000557262, ENST00000557490, uc002fpg.1, uc002fph.1, uc002fpi.1, uc010cja.1_5end |
EntrezGene: | TUBB3 |
HGNC: | 20772 |
UniProt: | G3V4U2G3V5W4G3V3R4G3V3W7Q13509A8K854 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.05e-30 | 250 |
mesodermal cell | 9.34e-21 | 121 |
electrically responsive cell | 1.35e-18 | 61 |
electrically active cell | 1.35e-18 | 61 |
muscle precursor cell | 6.62e-17 | 58 |
myoblast | 6.62e-17 | 58 |
multi-potent skeletal muscle stem cell | 6.62e-17 | 58 |
muscle cell | 7.69e-16 | 55 |
smooth muscle cell | 1.42e-14 | 43 |
smooth muscle myoblast | 1.42e-14 | 43 |
vascular associated smooth muscle cell | 4.14e-12 | 32 |
ectodermal cell | 1.14e-11 | 72 |
neurectodermal cell | 9.31e-11 | 59 |
epithelial cell | 7.44e-10 | 253 |
neural cell | 1.82e-08 | 25 |
epithelial cell of nephron | 1.82e-08 | 15 |
migratory neural crest cell | 4.63e-08 | 41 |
fibroblast | 9.40e-08 | 76 |
kidney tubule cell | 1.18e-07 | 10 |
nephron tubule epithelial cell | 1.18e-07 | 10 |
kidney cell | 1.46e-07 | 17 |
kidney epithelial cell | 1.46e-07 | 17 |