FF:10692-109F8: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF
Species:	Human (Homo sapiens)
Library ID:	CNhs11825
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	50
cell type	unclassifiable
cell line	SKG-II-SF
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005840

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11825		CAGE		DRX007913		DRR008785

Accession ID Hg19

Library id		BAM		CTSS
CNhs11825		DRZ000210		DRZ001595

Accession ID Hg38

Library id		BAM		CTSS
CNhs11825		DRZ011560		DRZ012945

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0335
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.435
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0762
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.015
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0149
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0756
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.629
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0864
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	5.800866e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0762
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.463
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.124
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0387
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11825

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00609
MA0003.1	MA0003.1	0.333
MA0004.1	MA0004.1	0.942
MA0006.1	MA0006.1	0.796
MA0007.1	MA0007.1	0.53
MA0009.1	MA0009.1	0.8
MA0014.1	MA0014.1	0.136
MA0017.1	MA0017.1	0.0223
MA0018.2	MA0018.2	0.317
MA0019.1	MA0019.1	0.451
MA0024.1	MA0024.1	0.001
MA0025.1	MA0025.1	0.168
MA0027.1	MA0027.1	0.293
MA0028.1	MA0028.1	0.101
MA0029.1	MA0029.1	0.041
MA0030.1	MA0030.1	0.194
MA0031.1	MA0031.1	0.456
MA0035.2	MA0035.2	0.585
MA0038.1	MA0038.1	0.00559
MA0039.2	MA0039.2	0.013
MA0040.1	MA0040.1	0.74
MA0041.1	MA0041.1	0.504
MA0042.1	MA0042.1	0.442
MA0043.1	MA0043.1	0.0452
MA0046.1	MA0046.1	0.954
MA0047.2	MA0047.2	0.994
MA0048.1	MA0048.1	0.843
MA0050.1	MA0050.1	0.35
MA0051.1	MA0051.1	0.909
MA0052.1	MA0052.1	0.382
MA0055.1	MA0055.1	0.0733
MA0057.1	MA0057.1	0.931
MA0058.1	MA0058.1	0.595
MA0059.1	MA0059.1	0.362
MA0060.1	MA0060.1	2.79108e-9
MA0061.1	MA0061.1	0.0138
MA0062.2	MA0062.2	0.14
MA0065.2	MA0065.2	0.0484
MA0066.1	MA0066.1	0.00381
MA0067.1	MA0067.1	0.815
MA0068.1	MA0068.1	0.576
MA0069.1	MA0069.1	0.487
MA0070.1	MA0070.1	0.719
MA0071.1	MA0071.1	0.0754
MA0072.1	MA0072.1	0.225
MA0073.1	MA0073.1	0.965
MA0074.1	MA0074.1	0.158
MA0076.1	MA0076.1	0.0521
MA0077.1	MA0077.1	0.782
MA0078.1	MA0078.1	0.349
MA0079.2	MA0079.2	0.296
MA0080.2	MA0080.2	7.15372e-9
MA0081.1	MA0081.1	0.266
MA0083.1	MA0083.1	0.921
MA0084.1	MA0084.1	0.886
MA0087.1	MA0087.1	0.956
MA0088.1	MA0088.1	0.399
MA0090.1	MA0090.1	0.0262
MA0091.1	MA0091.1	0.0279
MA0092.1	MA0092.1	0.168
MA0093.1	MA0093.1	0.991
MA0099.2	MA0099.2	0.0299
MA0100.1	MA0100.1	0.931
MA0101.1	MA0101.1	0.347
MA0102.2	MA0102.2	0.793
MA0103.1	MA0103.1	0.0336
MA0104.2	MA0104.2	0.531
MA0105.1	MA0105.1	1.59175e-6
MA0106.1	MA0106.1	0.0539
MA0107.1	MA0107.1	0.206
MA0108.2	MA0108.2	0.0419
MA0111.1	MA0111.1	0.487
MA0112.2	MA0112.2	9.67941e-5
MA0113.1	MA0113.1	0.0558
MA0114.1	MA0114.1	0.161
MA0115.1	MA0115.1	0.893
MA0116.1	MA0116.1	3.21131e-4
MA0117.1	MA0117.1	0.555
MA0119.1	MA0119.1	0.159
MA0122.1	MA0122.1	0.538
MA0124.1	MA0124.1	0.827
MA0125.1	MA0125.1	0.135
MA0131.1	MA0131.1	0.536
MA0135.1	MA0135.1	0.549
MA0136.1	MA0136.1	9.35734e-5
MA0137.2	MA0137.2	0.665
MA0138.2	MA0138.2	0.0292
MA0139.1	MA0139.1	0.266
MA0140.1	MA0140.1	0.978
MA0141.1	MA0141.1	0.0238
MA0142.1	MA0142.1	0.487
MA0143.1	MA0143.1	0.366
MA0144.1	MA0144.1	0.415
MA0145.1	MA0145.1	0.266
MA0146.1	MA0146.1	0.446
MA0147.1	MA0147.1	0.509
MA0148.1	MA0148.1	0.897
MA0149.1	MA0149.1	0.517
MA0150.1	MA0150.1	0.485
MA0152.1	MA0152.1	0.547
MA0153.1	MA0153.1	0.913
MA0154.1	MA0154.1	0.00435
MA0155.1	MA0155.1	0.216
MA0156.1	MA0156.1	0.433
MA0157.1	MA0157.1	0.392
MA0159.1	MA0159.1	0.183
MA0160.1	MA0160.1	0.241
MA0162.1	MA0162.1	0.52
MA0163.1	MA0163.1	1.68337e-5
MA0164.1	MA0164.1	0.696
MA0258.1	MA0258.1	3.59877e-4
MA0259.1	MA0259.1	0.98

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11825

Novel motif	Logo	P-value
1	1	0.052
10	10	0.201
100	100	0.739
101	101	0.547
102	102	0.568
103	103	0.225
104	104	0.633
105	105	0.549
106	106	0.112
107	107	0.722
108	108	0.7
109	109	0.942
11	11	0.0565
110	110	0.299
111	111	0.198
112	112	0.148
113	113	0.201
114	114	0.0157
115	115	0.712
116	116	0.47
117	117	0.264
118	118	0.638
119	119	0.0901
12	12	0.995
120	120	0.394
121	121	0.211
122	122	0.262
123	123	0.993
124	124	0.00563
125	125	0.15
126	126	0.645
127	127	0.616
128	128	0.00936
129	129	0.177
13	13	0.873
130	130	0.259
131	131	0.949
132	132	0.632
133	133	0.231
134	134	0.164
135	135	0.0104
136	136	0.0884
137	137	0.355
138	138	0.802
139	139	0.00265
14	14	0.499
140	140	0.265
141	141	0.6
142	142	0.263
143	143	0.012
144	144	0.163
145	145	0.15
146	146	0.917
147	147	0.846
148	148	0.0424
149	149	0.0167
15	15	0.227
150	150	0.85
151	151	0.435
152	152	0.875
153	153	0.352
154	154	0.77
155	155	0.695
156	156	0.513
157	157	0.233
158	158	0.325
159	159	0.594
16	16	0.369
160	160	0.155
161	161	0.667
162	162	0.823
163	163	0.846
164	164	0.625
165	165	0.947
166	166	0.835
167	167	0.891
168	168	0.385
169	169	0.0474
17	17	0.231
18	18	0.138
19	19	0.103
2	2	0.548
20	20	0.2
21	21	0.746
22	22	0.131
23	23	0.377
24	24	0.784
25	25	0.491
26	26	0.198
27	27	0.0604
28	28	0.841
29	29	0.372
3	3	0.046
30	30	0.739
31	31	0.352
32	32	0.00445
33	33	0.692
34	34	0.402
35	35	0.0243
36	36	0.922
37	37	0.0976
38	38	0.509
39	39	0.59
4	4	0.758
40	40	0.476
41	41	0.0562
42	42	0.312
43	43	0.0765
44	44	0.014
45	45	0.701
46	46	0.0209
47	47	0.193
48	48	0.222
49	49	0.143
5	5	0.0689
50	50	0.771
51	51	0.271
52	52	0.679
53	53	0.6
54	54	0.404
55	55	0.616
56	56	0.584
57	57	0.639
58	58	0.273
59	59	0.0896
6	6	0.725
60	60	0.229
61	61	0.859
62	62	0.0501
63	63	0.44
64	64	0.306
65	65	0.215
66	66	0.159
67	67	0.593
68	68	0.334
69	69	0.264
7	7	0.49
70	70	0.0963
71	71	0.133
72	72	0.438
73	73	0.559
74	74	0.0348
75	75	0.209
76	76	0.832
77	77	0.181
78	78	0.941
79	79	0.00195
8	8	0.0432
80	80	0.669
81	81	0.142
82	82	0.0314
83	83	0.315
84	84	0.939
85	85	0.00106
86	86	0.283
87	87	0.207
88	88	0.912
89	89	0.11
9	9	0.177
90	90	0.00987
91	91	0.157
92	92	0.0377
93	93	0.104
94	94	0.025
95	95	0.729
96	96	0.11
97	97	0.755
98	98	0.0664
99	99	0.975

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11825

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102202 lung squamous cell carcinoma cell line sample
FF:0102205 large cell lung cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
1749 (squamous cell carcinoma)
4556 (lung large cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102205 (large cell lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004802,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0003104,UBERON:0000115,UBERON:0000464,UBERON:0001048,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0005157,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0002224,UBERON:0000915,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0005597,UBERON:0006595,UBERON:0006603,UBERON:0000118
+|DRA_sample_Accession=CAGE@SAMD00005840
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000004,CL:0000082,CL:0000255
+|accession_numbers=CAGE;DRX007913;DRR008785;DRZ000210;DRZ001595;DRZ011560;DRZ012945
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:3905,DOID:3908,DOID:1749,DOID:4556
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0100353,FF:0101120,FF:0100762,FF:0102205,FF:0102202
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.21!161.21!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!2.11!127.24!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.94!137.41!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.91!80.80!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.90!87.13!IRF6;;chr17:7492684..7492778,-!p2@SOX15!1.67!94.42!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.65!71.01!TFAP2A;;chr9:100615499..100615519,+!p1@FOXE1!1.63!41.84!FOXE1;;chr2:176969228..176969260,+!p1@HOXD11!1.56!35.50!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.49!34.35!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.46!34.16!TFAP2A;;chr10:8096772..8096787,+!p2@GATA3!1.45!31.67!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.42!214.75!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.41!67.36!EPAS1;;chr8:102504651..102504683,+!p1@GRHL2!1.41!24.95!GRHL2;;chr5:137804405..137804444,+!p3@EGR1!1.38!27.64!EGR1;;chr10:8096631..8096660,+!p1@GATA3!1.38!27.44!GATA3;;chr12:80084737..80084763,-!p3@PAWR!1.35!78.69!PAWR;;chr10:48355030..48355090,+!p1@ZNF488!1.35!27.25!ZNF488;;chr5:2751785..2751808,-!p2@IRX2!1.31!19.19!IRX2;;chr1:6479968..6479986,-!p1@HES2!1.29!18.62!HES2;;chr3:189507432..189507459,+!p1@TP63!1.28!17.85!TP63;;chr12:77459306..77459365,-!p1@E2F7!1.27!216.86!E2F7;;chr11:65667884..65667895,-!p2@FOSL1!1.24!63.14!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.92!TFAP2C;;chr2:176969179..176969226,+!p2@HOXD11!1.24!16.31!HOXD11;;chr7:27205136..27205164,-!p1@HOXA9!1.24!16.31!HOXA9;;chr17:46687959..46688007,-!p2@HOXB7!1.23!22.26!HOXB7;;chr5:137801160..137801176,+!p1@EGR1!1.22!1527.26!EGR1;;chr3:169381420..169381535,-!p1@MECOM!1.17!16.12!MECOM;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.57!NR2F2;;chr11:65667846..65667868,-!p1@FOSL1!1.15!340.27!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.15!133.76!SOX9;;chr11:34642612..34642646,+!p1@EHF!1.15!13.05!EHF;;chr8:67525443..67525459,-!p2@MYBL1!1.14!19.19!MYBL1;;chr8:49833978..49833996,-!p1@SNAI2!1.13!253.90!SNAI2;;chr5:137804357..137804390,+!p4@EGR1!1.10!13.63!EGR1;;chr9:124976185..124976212,-!p4@LHX6!1.10!11.71!LHX6;;chr6:10412576..10412599,-!p5@TFAP2A!1.10!11.51!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.10!11.51!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!1.09!45.87!EGR1;;chr18:19749541..19749557,+!p1@GATA6!1.09!35.31!GATA6;;chr5:50679228..50679288,+!p1@ISL1!1.09!11.32!ISL1;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.62!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!1.08!64.87!PAWR;;chr7:27135591..27135658,-!p1@HOXA1!1.08!21.49!HOXA1;;chr13:73633131..73633149,+!p1@KLF5!1.07!114.38!KLF5;;chr19:33793430..33793447,-!p1@CEBPA!1.07!46.25!CEBPA;;chr8:60031682..60031710,-!p2@TOX!1.07!17.46!TOX;;chr1:212782094..212782109,+!p1@ATF3!1.06!284.61!ATF3;;chr7:27153454..27153469,-!p2@HOXA3!1.06!10.36!HOXA3;;chr19:33865009..33865090,+!p3@CEBPG!1.05!13.82!CEBPG;;chr11:65668011..65668020,-!p3@FOSL1!1.05!10.17!FOSL1;;chr6:10412392..10412409,-!p4@TFAP2A!1.04!11.32!TFAP2A;;chr19:33864571..33864596,+!p2@CEBPG!1.03!24.37!CEBPG;;chr7:27192185..27192209,-!p1@HOXA3!1.03!9.79!HOXA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.03!9.79!LRRFIP1;;chr19:45971246..45971265,+!p1@FOSB!1.01!174.26!FOSB;;chr17:48072574..48072597,-!p1@DLX3!1.01!9.21!DLX3;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!9.02!TFAP2A;;chr21:36421535..36421610,-!p2@RUNX1!0.99!31.86!RUNX1;;chr7:28448965..28448994,+!p2@CREB5!0.99!31.47!CREB5;;chr15:67418047..67418093,+!p4@SMAD3!0.99!11.13!SMAD3;;chr17:41277372..41277418,-!p1@BRCA1!0.98!31.47!BRCA1;;chr7:27205106..27205134,-!p2@HOXA9!0.98!8.44!HOXA9;;chr22:24093154..24093183,-!p2@ZNF70!0.98!8.44!ZNF70;;chr11:65554528..65554546,+!p1@OVOL1!0.98!8.44!OVOL1;;chr8:60031619..60031676,-!p1@TOX!0.97!18.62!TOX;;chr3:32023232..32023273,+!p1@ZNF860!0.97!11.90!ZNF860;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.25!HOXB6;;chr7:19157043..19157088,-!p2@TWIST1!0.96!20.73!TWIST1;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.60!GATA3;;chr3:12329358..12329393,+!p3@PPARG!0.95!20.15!PPARG;;chr12:54785074..54785122,-!p2@ZNF385A!0.95!12.47!ZNF385A;;chr1:158979872..158979898,+!p3@IFI16!0.94!24.76!IFI16;;chr21:38071430..38071456,+!p1@SIM2!0.94!7.68!SIM2;;chr17:46703687..46703740,-!p1@HOXB9!0.94!7.68!HOXB9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.94!7.68!ZBED1;;chr9:110252035..110252057,-!p1@KLF4!0.93!123.98!KLF4;;chr2:172967621..172967637,-!p1@DLX2!0.92!20.15!DLX2;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.90!ZFP64;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.29!HOXA11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.29!TFCP2L1;;chr19:12163769..12163798,-!p1@ZNF878!0.90!9.21!ZNF878;;chr15:67418119..67418162,+!p5@SMAD3!0.90!7.68!SMAD3;;chr19:45579725..45579743,-!p1@ZNF296!0.89!31.67!ZNF296;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.09!EPAS1;;chr6:1312155..1312187,+!p2@FOXQ1!0.89!6.72!FOXQ1;;chr9:124976154..124976177,-!p5@LHX6!0.88!6.53!LHX6;;chr14:61116183..61116208,-!p1@SIX1!0.87!25.72!SIX1;;chr15:96869114..96869160,+!p11@NR2F2!0.87!8.83!NR2F2;;chr3:141868357..141868393,-!p3@TFDP2!0.86!43.37!TFDP2;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr14:75745523..75745537,+!p1@FOS!0.85!781.09!FOS;;chr2:10183651..10183713,+!p1@KLF11!0.85!47.21!KLF11;;chr8:99956662..99956684,+!p1@OSR2!0.85!9.60!OSR2;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.14!PAX9;;chr3:69788576..69788648,+!p1@MITF!0.84!33.39!MITF;;chr11:65686732..65686756,+!p2@DRAP1!0.84!26.68!DRAP1;;chr11:65554563..65554576,+!p2@OVOL1!0.84!5.95!OVOL1;;chr7:27196267..27196311,-!p1@HOXA7!0.84!5.95!HOXA7;;chr6:31126291..31126399,+!p1@TCF19!0.83!59.30!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.60!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!0.83!13.63!PPARG;;chr1:201979743..201979762,+!p1@ELF3!0.83!5.76!ELF3;;chr1:209979411..209979433,-!p2@IRF6!0.83!5.76!IRF6;;chr9:14314131..14314147,-!p2@NFIB!0.82!33.59!NFIB;;chr1:197886461..197886558,+!p1@LHX9!0.82!5.57!LHX9;;chr2:171571827..171571853,+!p1@SP5!0.82!5.57!SP5;;chr2:177053386..177053402,+!p1@HOXD1!0.82!5.57!HOXD1;;chr2:45236540..45236577,-!p1@SIX2!0.82!5.57!SIX2;;chr1:935398..935465,-!p2@HES4!0.81!11.90!HES4;;chr6:126102292..126102329,+!p3@NCOA7!0.80!18.62!NCOA7;;chr18:19749517..19749531,+!p3@GATA6!0.80!9.98!GATA6;;chr8:67525524..67525543,-!p3@MYBL1!0.80!9.21!MYBL1;;chr12:80084279..80084293,-!p8@PAWR!0.80!9.21!PAWR;;chr15:96869222..96869251,+!p18@NR2F2!0.80!6.33!NR2F2;;chr3:138665937..138665968,-!p1@FOXL2!0.80!5.37!FOXL2;;chr3:69915385..69915438,+!p3@MITF!0.80!5.37!MITF;;chr8:60031762..60031803,-!p3@TOX!0.79!7.68!TOX;;chr1:59249688..59249703,-!p3@JUN!0.78!33.01!JUN;;chr6:1389789..1389821,+!p1@FOXF2!0.78!7.10!FOXF2;;chr1:27023752..27023799,+!p4@ARID1A!0.78!6.91!ARID1A;;chr1:3569072..3569093,+!p1@TP73!0.78!4.99!TP73;;chr5:43120995..43121052,+!p1@ZNF131!0.77!27.06!ZNF131;;chr20:2673383..2673441,+!p1@EBF4!0.77!8.06!EBF4;;chr3:24536253..24536328,-!p1@THRB!0.76!9.60!THRB;;chr11:65686802..65686818,+!p6@DRAP1!0.76!8.64!DRAP1;;chr4:109089095..109089144,-!p6@LEF1!0.76!4.80!LEF1;;chr17:46703212..46703238,-!p2@HOXB9!0.76!4.80!HOXB9;;chr17:48046543..48046575,+!p2@DLX4!0.76!4.80!DLX4;;chr5:43067636..43067674,+!p6@ZNF131!0.75!6.53!ZNF131;;chr9:110251836..110251887,-!p4@KLF4!0.75!6.33!KLF4;;chr15:83953373..83953386,-!p2@BNC1!0.75!4.61!BNC1;;chr15:96869206..96869220,+!p21@NR2F2!0.75!4.61!NR2F2;;chr3:138665969..138665993,-!p2@FOXL2!0.75!4.61!FOXL2;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.87!MSX2;;chr18:19749386..19749404,+!p2@GATA6!0.74!6.72!GATA6;;chr12:66218378..66218401,+!p6@HMGA2!0.73!7.10!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.73!4.41!HOXC10;;chr3:69915369..69915381,+!p4@MITF!0.73!4.41!MITF;;chr8:102504690..102504704,+!p3@GRHL2!0.73!4.41!GRHL2;;chr20:32274179..32274213,-!p1@E2F1!0.72!31.28!E2F1;;chr13:100634031..100634045,+!p1@ZIC2!0.72!4.22!ZIC2;;chr6:10419824..10419840,-!p9@TFAP2A!0.72!4.22!TFAP2A;;chr15:96874012..96874042,+!p2@NR2F2!0.71!41.84!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.06!MYBL2;;chr10:64576105..64576133,-!p1@EGR2!0.71!9.21!EGR2;;chr2:208030886..208030917,-!p4@KLF7!0.71!8.64!KLF7;;chr14:33408072..33408114,+!p2@NPAS3!0.71!4.99!NPAS3;;chr20:42295745..42295765,+!p1@MYBL2!0.70!74.27!MYBL2;;chr12:80084768..80084821,-!p2@PAWR!0.70!31.47!PAWR;;chr1:59249645..59249656,-!p4@JUN!0.70!11.13!JUN;;chr12:80084167..80084197,-!p5@PAWR!0.70!10.36!PAWR;;chr1:158979851..158979865,+!p5@IFI16!0.70!9.60!IFI16;;chr3:157823517..157823562,-!p1@SHOX2!0.70!4.41!SHOX2;;chr12:2986275..2986363,-!p1@FOXM1!0.68!43.76!FOXM1;;chr12:66218255..66218304,+!p3@HMGA2!0.68!11.32!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!0.68!7.10!IFI16;;chr17:45928521..45928539,-!p1@SP6!0.68!3.84!SP6;;chr17:46703240..46703257,-!p6@HOXB9!0.68!3.84!HOXB9;;chr10:28032421..28032494,-!p2@MKX!0.68!3.84!MKX;;chr14:37051798..37051831,-!p1@NKX2-8!0.68!3.84!NKX2-8;;chr3:24536332..24536358,-!p2@THRB!0.68!3.84!THRB;;chr19:33864600..33864732,+!p1@CEBPG!0.67!119.95!CEBPG;;chr12:52445218..52445237,+!p1@NR4A1!0.67!53.35!NR4A1;;chr6:34205372..34205412,+!p5@HMGA1!0.67!21.30!HMGA1;;chr6:10419884..10419898,-!p11@TFAP2A!0.67!3.65!TFAP2A;;chr10:28032548..28032559,-!p7@MKX!0.67!3.65!MKX;;chr19:45908278..45908282,-!p5@PPP1R13L!0.67!3.65!PPP1R13L;;chr21:38071403..38071428,+!p2@SIM2!0.67!3.65!SIM2;;chr3:141087562..141087594,+!p12@ZBTB38!0.67!3.65!ZBTB38;;chr1:59249707..59249727,-!p1@JUN!0.66!175.03!JUN;;chr22:29196547..29196563,-!p2@XBP1!0.66!152.00!XBP1;;chr7:19157248..19157268,-!p1@TWIST1!0.66!10.94!TWIST1;;chr3:141087339..141087387,+!p2@ZBTB38!0.65!41.26!ZBTB38;;chr6:20402102..20402152,+!p1@E2F3!0.65!16.31!E2F3;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.83!MYBL1;;chr5:134369879..134369898,-!p2@PITX1!0.65!3.45!PITX1;;chr6:28048343..28048354,+!p1@ZNF165!0.65!3.45!ZNF165;;chr9:100615546..100615558,+!p4@FOXE1!0.65!3.45!FOXE1;;chr17:41622731..41622764,-!p5@ETV4!0.65!3.45!ETV4;;chr17:45928443..45928473,-!p2@SP6!0.65!3.45!SP6;;chr3:141868293..141868355,-!p2@TFDP2!0.64!34.74!TFDP2;;chr19:45909594..45909625,-!p2@PPP1R13L!0.64!18.04!PPP1R13L;;chr3:178789622..178789633,-!p3@ZMAT3!0.64!7.10!ZMAT3;;chr3:141868230..141868250,-!p6@TFDP2!0.64!4.22!TFDP2;;chr17:7590797..7590815,-!p1@TP53!0.63!169.08!TP53;;c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+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10692-109F8
 |is_a=EFO:0002091;;FF:0000210;;FF:0102202;;FF:0102205
 |is_obsolete=
+|library_id=CNhs11825
+|library_id_phase_based=2:CNhs11825
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10692
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10692
 |name=large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11825,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=109
 |rna_catalog_number=
@@ Line 58: / Line 78: @@
 |rna_weight_ug=43.79272
 |sample_age=50
+|sample_category=cell lines
 |sample_cell_catalog=RCB0685
 |sample_cell_line=SKG-II-SF
@@ Line 79: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10692-109F8;search_select_hide=table117:FF:10692-109F8
 }}

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FF:10692-109F8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0