FFCP PHASE1:Hg19::chr5:138210931..138210938,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26045|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19409|TSSclassifier=S|UniProt=O43300|association_with_transcript=40bp_to_ENST00000274711_5end|coexpression_cluster_id=C257|description=CAGE_peak_6_at_LRRTM2_5end|id=chr5:138210931..138210938,-|ontology_enrichment_celltype=CL:0002605!5.93e-08!3|ontology_enrichment_celltype_v019=CL:0000540;2.61e-09;6!CL:0000404;2.61e-09;6!CL:0000047;9.86e-08;2|ontology_enrichment_celltype_v019_2=CL:0000047,1.01e-14,8;CL:0000540,3.14e-09,6;CL:0000031,3.14e-09,6;CL:0000404,3.14e-09,6|ontology_enrichment_development_v019=UBERON:0006215;2.29e-17;3!UBERON:0005425;5.15e-14;1!CL:0000031;2.61e-09;6!UBERON:0010122;1.81e-07;2!UBERON:0006601;2.58e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.91e-86!57;UBERON:0005068!3.91e-86!57;UBERON:0006241!3.91e-86!57;UBERON:0007135!3.91e-86!57;UBERON:0001017!2.08e-84!82;UBERON:0005743!4.95e-83!86;UBERON:0000073!3.18e-80!94;UBERON:0001016!3.18e-80!94;UBERON:0002616!1.08e-78!59;UBERON:0000955!1.88e-78!69;UBERON:0006238!1.88e-78!69;UBERON:0002780!7.80e-73!41;UBERON:0001890!7.80e-73!41;UBERON:0006240!7.80e-73!41;UBERON:0003080!6.78e-71!42;UBERON:0003075!2.01e-61!86;UBERON:0007284!2.01e-61!86;UBERON:0002020!3.05e-60!34;UBERON:0003528!3.05e-60!34;UBERON:0001893!4.65e-60!34;UBERON:0002346!3.93e-58!90;UBERON:0002791!1.23e-57!33;UBERON:0001869!8.45e-56!32;UBERON:0003056!8.36e-52!61;UBERON:0000033!1.05e-46!123;UBERON:0000153!9.02e-46!129;UBERON:0007811!9.02e-46!129;UBERON:0007023!1.15e-43!115;UBERON:0000956!1.52e-43!25;UBERON:0000203!1.52e-43!25;UBERON:0004121!4.69e-42!169;UBERON:0000924!9.41e-41!173;UBERON:0006601!9.41e-41!173;UBERON:0002619!3.02e-37!22;UBERON:0001950!2.62e-32!20;UBERON:0004732!5.16e-19!13;UBERON:0002308!8.33e-18!9;UBERON:0000125!8.33e-18!9;UBERON:0000025!7.48e-17!194;UBERON:0004733!1.47e-16!12;UBERON:0002028!1.47e-16!12;UBERON:0007277!1.47e-16!12;UBERON:0000200!2.25e-16!6;UBERON:0003076!3.92e-16!15;UBERON:0003057!3.92e-16!15;UBERON:0004111!2.95e-15!241;UBERON:0002298!5.55e-15!8;UBERON:0000477!7.34e-14!286;UBERON:0001894!9.02e-14!7;UBERON:0006222!9.02e-14!7;UBERON:0002420!2.12e-13!9;UBERON:0007245!2.12e-13!9;UBERON:0010009!2.12e-13!9;UBERON:0010011!2.12e-13!9;UBERON:0000454!2.12e-13!9;UBERON:0009663!4.06e-13!7;UBERON:0000064!2.14e-12!219;UBERON:0001871!1.37e-11!7;UBERON:0000483!2.96e-11!309;UBERON:0000119!5.05e-11!312;UBERON:0002680!1.89e-10!9;UBERON:0001895!1.89e-10!9;UBERON:0010092!1.89e-10!9;UBERON:0000475!2.06e-09!365;UBERON:0002771!3.85e-09!3;UBERON:0001872!4.45e-09!5;UBERON:0000349!5.60e-09!5;UBERON:0000988!1.09e-08!3;UBERON:0006331!1.99e-08!3;UBERON:0001896!2.44e-08!3;UBERON:0005290!2.44e-08!3;UBERON:0010096!2.44e-08!3;UBERON:0002021!3.27e-08!5;UBERON:0003296!3.55e-07!4;UBERON:0010133!3.55e-07!4;UBERON:0001905!4.12e-07!2;UBERON:0002757!4.12e-07!2;UBERON:0010134!4.12e-07!2;UBERON:0002784!4.12e-07!2;UBERON:0005408!4.12e-07!2;UBERON:0001899!4.12e-07!2;UBERON:0000062!5.30e-07!511;UBERON:0000481!7.59e-07!347;UBERON:0001954!7.90e-07!2;UBERON:0003022!7.90e-07!2;UBERON:0002421!7.90e-07!2;UBERON:0002600!7.90e-07!2|ontology_enrichment_uberon_v019=UBERON:0001905;1.90e-26;2!UBERON:0002757;1.90e-26;2!UBERON:0010134;1.90e-26;2!UBERON:0005408;1.90e-26;2!UBERON:0001899;1.90e-26;2!UBERON:0000941;5.15e-14;1!UBERON:0001785;5.15e-14;1!UBERON:0002464;5.15e-14;1!UBERON:0004904;5.15e-14;1!UBERON:0001021;5.15e-14;1!UBERON:0003296;9.75e-14;4!UBERON:0010133;9.75e-14;4!UBERON:0002784;9.75e-14;4!UBERON:0001017;2.94e-12;75!UBERON:0001016;3.14e-12;83!UBERON:0000955;4.83e-11;68!UBERON:0002780;2.07e-09;41!UBERON:0001890;2.07e-09;41!UBERON:0004732;3.40e-09;13!UBERON:0002037;3.71e-09;6!UBERON:0001894;3.10e-08;7!UBERON:0000073;5.64e-08;53!UBERON:0002616;5.64e-08;53!UBERON:0009663;5.66e-08;7!UBERON:0001954;1.20e-07;2!UBERON:0003714;1.20e-07;2!UBERON:0005162;1.20e-07;2!UBERON:0000122;1.20e-07;2!UBERON:0003022;1.20e-07;2!UBERON:0002421;1.20e-07;2!UBERON:0002600;1.20e-07;2!UBERON:0001873;1.81e-07;2!UBERON:0001875;1.81e-07;2!UBERON:0006514;1.81e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.11e-28,89;UBERON:0001017,1.20e-27,81;UBERON:0001905,2.16e-26,2;UBERON:0002757,2.16e-26,2;UBERON:0010134,2.16e-26,2;UBERON:0005408,2.16e-26,2;UBERON:0001899,2.16e-26,2;UBERON:0001049,1.22e-16,56;UBERON:0005068,1.22e-16,56;UBERON:0006241,1.22e-16,56;UBERON:0007135,1.22e-16,56;UBERON:0000955,1.54e-16,68;UBERON:0006238,1.54e-16,68;UBERON:0004121,2.27e-14,171;UBERON:0000924,2.27e-14,171;UBERON:0006601,2.27e-14,171;UBERON:0000941,4.53e-14,1;UBERON:0001785,4.53e-14,1;UBERON:0002464,4.53e-14,1;UBERON:0004904,4.53e-14,1;UBERON:0001021,4.53e-14,1;UBERON:0003902,4.53e-14,1;UBERON:0005425,4.53e-14,1;UBERON:0000073,6.19e-14,53;UBERON:0002616,6.19e-14,53;UBERON:0003075,8.39e-14,82;UBERON:0007284,8.39e-14,82;UBERON:0003296,1.04e-13,4;UBERON:0010133,1.04e-13,4;UBERON:0002784,1.04e-13,4;UBERON:0002346,4.10e-13,86;UBERON:001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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19409 | |||
|TSSclassifier=S | |||
|UniProt=O43300 | |||
|association_with_transcript=40bp_to_ENST00000274711_5end | |||
|coexpression_cluster_id=C257 | |||
|description=CAGE_peak_6_at_LRRTM2_5end | |||
|id=chr5:138210931..138210938,- | |||
|ontology_enrichment_celltype=CL:0002605!5.93e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.61e-09;6!CL:0000404;2.61e-09;6!CL:0000047;9.86e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.01e-14,8;CL:0000540,3.14e-09,6;CL:0000031,3.14e-09,6;CL:0000404,3.14e-09,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.29e-17;3!UBERON:0005425;5.15e-14;1!CL:0000031;2.61e-09;6!UBERON:0010122;1.81e-07;2!UBERON:0006601;2.58e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p6@LRRTM2 | |||
}} |
Revision as of 13:26, 13 September 2013
Short description: | p6@LRRTM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LRRTM2_5end |
Coexpression cluster: | C257_pineal_insula_frontal_occipital_temporal_medial_paracentral |
Association with transcript: | 40bp_to_ENST00000274711_5end |
EntrezGene: | LRRTM2 |
HGNC: | 19409 |
UniProt: | O43300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.01e-14 | 8 |
neuron | 3.14e-09 | 6 |
neuroblast | 3.14e-09 | 6 |
electrically signaling cell | 3.14e-09 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.