FFCP PHASE1:Hg19::chr5:138210931..138210938,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19409 | |||
|TSSclassifier=strong | |||
|UniProt=O43300 | |||
|association_with_transcript=40bp_to_ENST00000274711_5end | |||
|coexpression_cluster_id=C257 | |||
|description=CAGE_peak_6_at_LRRTM2_5end | |||
|id=chr5:138210931..138210938,- | |||
|ontology_enrichment_celltype=CL:0002605!5.93e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.61e-09;6!CL:0000404;2.61e-09;6!CL:0000047;9.86e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.01e-14,8;CL:0000540,3.14e-09,6;CL:0000031,3.14e-09,6;CL:0000404,3.14e-09,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.29e-17;3!UBERON:0005425;5.15e-14;1!CL:0000031;2.61e-09;6!UBERON:0010122;1.81e-07;2!UBERON:0006601;2.58e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.91e-86!57;UBERON:0005068!3.91e-86!57;UBERON:0006241!3.91e-86!57;UBERON:0007135!3.91e-86!57;UBERON:0001017!2.08e-84!82;UBERON:0005743!4.95e-83!86;UBERON:0000073!3.18e-80!94;UBERON:0001016!3.18e-80!94;UBERON:0002616!1.08e-78!59;UBERON:0000955!1.88e-78!69;UBERON:0006238!1.88e-78!69;UBERON:0002780!7.80e-73!41;UBERON:0001890!7.80e-73!41;UBERON:0006240!7.80e-73!41;UBERON:0003080!6.78e-71!42;UBERON:0003075!2.01e-61!86;UBERON:0007284!2.01e-61!86;UBERON:0002020!3.05e-60!34;UBERON:0003528!3.05e-60!34;UBERON:0001893!4.65e-60!34;UBERON:0002346!3.93e-58!90;UBERON:0002791!1.23e-57!33;UBERON:0001869!8.45e-56!32;UBERON:0003056!8.36e-52!61;UBERON:0000033!1.05e-46!123;UBERON:0000153!9.02e-46!129;UBERON:0007811!9.02e-46!129;UBERON:0007023!1.15e-43!115;UBERON:0000956!1.52e-43!25;UBERON:0000203!1.52e-43!25;UBERON:0004121!4.69e-42!169;UBERON:0000924!9.41e-41!173;UBERON:0006601!9.41e-41!173;UBERON:0002619!3.02e-37!22;UBERON:0001950!2.62e-32!20;UBERON:0004732!5.16e-19!13;UBERON:0002308!8.33e-18!9;UBERON:0000125!8.33e-18!9;UBERON:0000025!7.48e-17!194;UBERON:0004733!1.47e-16!12;UBERON:0002028!1.47e-16!12;UBERON:0007277!1.47e-16!12;UBERON:0000200!2.25e-16!6;UBERON:0003076!3.92e-16!15;UBERON:0003057!3.92e-16!15;UBERON:0004111!2.95e-15!241;UBERON:0002298!5.55e-15!8;UBERON:0000477!7.34e-14!286;UBERON:0001894!9.02e-14!7;UBERON:0006222!9.02e-14!7;UBERON:0002420!2.12e-13!9;UBERON:0007245!2.12e-13!9;UBERON:0010009!2.12e-13!9;UBERON:0010011!2.12e-13!9;UBERON:0000454!2.12e-13!9;UBERON:0009663!4.06e-13!7;UBERON:0000064!2.14e-12!219;UBERON:0001871!1.37e-11!7;UBERON:0000483!2.96e-11!309;UBERON:0000119!5.05e-11!312;UBERON:0002680!1.89e-10!9;UBERON:0001895!1.89e-10!9;UBERON:0010092!1.89e-10!9;UBERON:0000475!2.06e-09!365;UBERON:0002771!3.85e-09!3;UBERON:0001872!4.45e-09!5;UBERON:0000349!5.60e-09!5;UBERON:0000988!1.09e-08!3;UBERON:0006331!1.99e-08!3;UBERON:0001896!2.44e-08!3;UBERON:0005290!2.44e-08!3;UBERON:0010096!2.44e-08!3;UBERON:0002021!3.27e-08!5;UBERON:0003296!3.55e-07!4;UBERON:0010133!3.55e-07!4;UBERON:0001905!4.12e-07!2;UBERON:0002757!4.12e-07!2;UBERON:0010134!4.12e-07!2;UBERON:0002784!4.12e-07!2;UBERON:0005408!4.12e-07!2;UBERON:0001899!4.12e-07!2;UBERON:0000062!5.30e-07!511;UBERON:0000481!7.59e-07!347;UBERON:0001954!7.90e-07!2;UBERON:0003022!7.90e-07!2;UBERON:0002421!7.90e-07!2;UBERON:0002600!7.90e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.90e-26;2!UBERON:0002757;1.90e-26;2!UBERON:0010134;1.90e-26;2!UBERON:0005408;1.90e-26;2!UBERON:0001899;1.90e-26;2!UBERON:0000941;5.15e-14;1!UBERON:0001785;5.15e-14;1!UBERON:0002464;5.15e-14;1!UBERON:0004904;5.15e-14;1!UBERON:0001021;5.15e-14;1!UBERON:0003296;9.75e-14;4!UBERON:0010133;9.75e-14;4!UBERON:0002784;9.75e-14;4!UBERON:0001017;2.94e-12;75!UBERON:0001016;3.14e-12;83!UBERON:0000955;4.83e-11;68!UBERON:0002780;2.07e-09;41!UBERON:0001890;2.07e-09;41!UBERON:0004732;3.40e-09;13!UBERON:0002037;3.71e-09;6!UBERON:0001894;3.10e-08;7!UBERON:0000073;5.64e-08;53!UBERON:0002616;5.64e-08;53!UBERON:0009663;5.66e-08;7!UBERON:0001954;1.20e-07;2!UBERON:0003714;1.20e-07;2!UBERON:0005162;1.20e-07;2!UBERON:0000122;1.20e-07;2!UBERON:0003022;1.20e-07;2!UBERON:0002421;1.20e-07;2!UBERON:0002600;1.20e-07;2!UBERON:0001873;1.81e-07;2!UBERON:0001875;1.81e-07;2!UBERON:0006514;1.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.11e-28,89;UBERON:0001017,1.20e-27,81;UBERON:0001905,2.16e-26,2;UBERON:0002757,2.16e-26,2;UBERON:0010134,2.16e-26,2;UBERON:0005408,2.16e-26,2;UBERON:0001899,2.16e-26,2;UBERON:0001049,1.22e-16,56;UBERON:0005068,1.22e-16,56;UBERON:0006241,1.22e-16,56;UBERON:0007135,1.22e-16,56;UBERON:0000955,1.54e-16,68;UBERON:0006238,1.54e-16,68;UBERON:0004121,2.27e-14,171;UBERON:0000924,2.27e-14,171;UBERON:0006601,2.27e-14,171;UBERON:0000941,4.53e-14,1;UBERON:0001785,4.53e-14,1;UBERON:0002464,4.53e-14,1;UBERON:0004904,4.53e-14,1;UBERON:0001021,4.53e-14,1;UBERON:0003902,4.53e-14,1;UBERON:0005425,4.53e-14,1;UBERON:0000073,6.19e-14,53;UBERON:0002616,6.19e-14,53;UBERON:0003075,8.39e-14,82;UBERON:0007284,8.39e-14,82;UBERON:0003296,1.04e-13,4;UBERON:0010133,1.04e-13,4;UBERON:0002784,1.04e-13,4;UBERON:0002346,4.10e-13,86;UBERON:0011216,2.82e-12,223;UBERON:0007023,7.87e-12,114;UBERON:0010371,1.17e-10,104;UBERON:0002780,2.25e-10,41;UBERON:0001890,2.25e-10,41;UBERON:0003080,2.25e-10,41;UBERON:0006240,2.25e-10,41;UBERON:0003056,2.65e-09,61;UBERON:0004732,3.13e-09,13;UBERON:0002037,3.42e-09,6;UBERON:0006215,3.42e-09,6;UBERON:0001894,3.21e-08,7;UBERON:0006222,3.21e-08,7;UBERON:0010314,3.78e-08,132;UBERON:0003076,5.25e-08,15;UBERON:0003057,5.25e-08,15;UBERON:0009663,6.99e-08,7;UBERON:0003714,1.12e-07,2;UBERON:0005162,1.12e-07,2;UBERON:0000122,1.12e-07,2;UBERON:0001954,1.20e-07,2;UBERON:0003022,1.20e-07,2;UBERON:0002421,1.20e-07,2;UBERON:0002600,1.20e-07,2;UBERON:0001875,2.12e-07,2;UBERON:0006514,2.12e-07,2;UBERON:0001873,2.25e-07,2;UBERON:0010122,2.25e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.33598710867173,0,3.09315525111078,1.00509759200609,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0.969332746095218,1.20598527610407,1.99613798001194,0,0,0,0,0,0,0,0,0.173624994933292,0,1.08536794762867,1.52581736317083,1.21637185924347,0.295547618953547,0.87754158861589,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.468528891450678,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.684526894459965,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0.817220436669454,0,0,0,0,0,0.485996453264197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0.517131825446202,0.92562821219883,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0.886068179966986,0.976210119215705,0.625954653532499,0.573409195690071,0.554645257684261,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,0,0.638535436228605,0.205116364240755,0.252071696221718,0.207471757392654,0.807378228159255,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0.781078098613847,1.65349437200947,0.443910671357348,0,0,0,0,0,2.14280734351315,9.07966049990825,0.606965604236632,0,0,0,0,0.339848664884159,0.591954962065642,0,0,0,0.157115589916002,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,1.37415926980462,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.543931921527318,1.30905207102113,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.20686599172379,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@LRRTM2 | |||
}} |
Revision as of 07:42, 22 January 2014
Short description: | p6@LRRTM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRRTM2_5end |
Coexpression cluster: | C257_pineal_insula_frontal_occipital_temporal_medial_paracentral |
Association with transcript: | 40bp_to_ENST00000274711_5end |
EntrezGene: | LRRTM2 |
HGNC: | 19409 |
UniProt: | O43300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.01e-14 | 8 |
neuron | 3.14e-09 | 6 |
neuroblast | 3.14e-09 | 6 |
electrically signaling cell | 3.14e-09 | 6 |