FF:10818-111B8: Difference between revisions
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|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
Revision as of 17:58, 14 March 2012
| Name: | hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 |
|---|---|
| Species: | |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
|
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
FF:0100599 Hep-G2 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
DOID: Disease
0050687 (cell type cancer)
14566 (disease of cellular proliferation)
162 (cancer)
305 (carcinoma)
4 (disease)
7 (disease of anatomical entity)
UBERON: Anatomy
0000015 (anatomical boundary)
0000061 (anatomical structure)
0000062 (organ)
0000077 (mixed endoderm/mesoderm-derived structure)
0000465 (material anatomical entity)
0000466 (immaterial anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000916 (abdomen)
0000922 (embryo)
0000923 (germ layer)
0000925 (endoderm)
0000926 (mesoderm)
0000949 (endocrine system)
0001007 (digestive system)
0001041 (foregut)
0001048 (primordium)
0001062 (anatomical entity)
0001555 (digestive tract)
0002050 (embryonic structure)
0002100 (trunk)
0002107 (liver)
0002330 (exocrine system)
0002365 (exocrine gland)
0002368 (endocrine gland)
0002405 (immune system)
0002417 (abdominal segment of trunk)
0002423 (hepatobiliary system)
0002530 (gland)
0002532 (epiblast (generic))
0003104 (mesenchyme)
0003894 (liver primordium)
0004119 (endoderm-derived structure)
0004120 (mesoderm-derived structure)
0004161 (septum transversum)
0004185 (endodermal part of digestive tract)
0004921 (subdivision of digestive tract)
0005057 (immune organ)
0005172 (abdomen element)
0005173 (abdominal segment element)
0005177 (trunk region element)
0005256 (trunk mesenchyme)
0005423 (developing anatomical structure)
0006235 (foregut-midgut junction)
0006925 (digestive gland)
0007026 (primitive gut)
0008835 (hepatic diverticulum)
0008836 (liver bud)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
