Coexpression cluster:C4210: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 9: | Line 9: | ||
|tf_chipseq_enrich=BCLAF1#9774;2:14.4350984067479:0.00620114743554613:0.0273913735840383!BRCA1#672;2:13.4561537621492:0.00711980771608456:0.0296355505185188!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.019048935222739!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280229439124575!CTCFL#140690;2:13.1643162393162:0.00743336703699601:0.0306863283124561!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326325510055886!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323153100400177!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321468466638721!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463545769407588!ELK4#2005;2:10.823787772312:0.0109128471951648:0.0402076782690967!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763766523635963!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376834214868666!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0154469411078265!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108918265247454!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128400408497632!MEF2C#4208;2:27.5409029950827:0.00172911993836969:0.0106503631306554!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0270181058606414!NR3C1#2908;2:9.98201555411536:0.0127847436554717:0.0460565638520165!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0173291562482913!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00165501977250466!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277521476038459!SIX5#147912;2:11.391143570306:0.00987382008142903:0.0370846152222234!SMARCB1#6598;2:12.1684771874383:0.00867500222192174:0.0329985634125614!SMC3#9126;2:10.0299552299552:0.012665637976747:0.0457695776842836!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247125168843207!SP2#6668;2:17.4356869958964:0.00427356848176974:0.0203236291001115!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00615360562190553!TFAP2A#7020;2:11.0124229153633:0.0105499065521556:0.0390246401643615!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190784175239247!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330156594556085 | |tf_chipseq_enrich=BCLAF1#9774;2:14.4350984067479:0.00620114743554613:0.0273913735840383!BRCA1#672;2:13.4561537621492:0.00711980771608456:0.0296355505185188!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.019048935222739!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280229439124575!CTCFL#140690;2:13.1643162393162:0.00743336703699601:0.0306863283124561!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326325510055886!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323153100400177!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321468466638721!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463545769407588!ELK4#2005;2:10.823787772312:0.0109128471951648:0.0402076782690967!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763766523635963!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376834214868666!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0154469411078265!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108918265247454!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128400408497632!MEF2C#4208;2:27.5409029950827:0.00172911993836969:0.0106503631306554!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0270181058606414!NR3C1#2908;2:9.98201555411536:0.0127847436554717:0.0460565638520165!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0173291562482913!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00165501977250466!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277521476038459!SIX5#147912;2:11.391143570306:0.00987382008142903:0.0370846152222234!SMARCB1#6598;2:12.1684771874383:0.00867500222192174:0.0329985634125614!SMC3#9126;2:10.0299552299552:0.012665637976747:0.0457695776842836!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247125168843207!SP2#6668;2:17.4356869958964:0.00427356848176974:0.0203236291001115!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00615360562190553!TFAP2A#7020;2:11.0124229153633:0.0105499065521556:0.0390246401643615!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190784175239247!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330156594556085 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00129531,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0594776,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.00196532,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.00995227,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.0151713,0.164202,0.100942,0.062995,0.10299,0.14193,0.0800546,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.00100585,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.00713165,0.159052,0.0183114,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0585224,0.0619218,0.1751,0.000828043,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,2.34834e-05,0.063292,0.254773,0.000371199,0.0865903,0.0380459,0.130174,0.219944,0.713218,0.451377,0.019623,0.563047,0.0319444,0.00156905,0.335423,0.0790073,0.261553,0.446302,0.373681,0.053682,0.49143,0.330703,0.0018019,0.061507,0.178727,0.615744,0.271958,0.292154,0.405773,0.0921263,0.0582602,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.0620388,0.218329,0.000281575,0.376924,0.463191,0.0883629,0.528324,0.520763,0.370782,0.415647,0.00475652,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.0026262,0.0447111,0.314747,0.21363,0.291709,0.120054,0.576651,0.416816,0.292835,0.476744,0.439556,0.0807167,0.213592,0.608919,0.18237,0.126021,0.0964442,1.43819e-05,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.00341096,0.503058,0.513852,0.522083,0.248634,0.0439966,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.0582356,0.0583074,0.412837,0.671377,0.546839,0.551561,0.448039,0.0258593,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.0897888,0.00223439,0.50215,0.294698,0.34331,0.0282052,0.00514398,0.0605279,0.00120886,0.278044,0.00692297,0.428671,0.228096,0.336314,0.19763,0.15631,0.00172609,0.104858,0.48267,0.420626,0.516462,3.89235e-05,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.0538047,0.206222,0.00713629,0.284166,0.113671,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.0385377,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.171389,0.257493,0.347298,0.539392,0.34988,0.475069,0.404569,0.0847452,0.0793778,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.0223093,0.116981,0.00303204,7.22648e-05,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.00461664,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.0238665,0.0200986,0.00934729,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.000207621,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.166024,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.0154037,0.201033,0.0488949,0.174921,0.00132287,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.00681584,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.00136406,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.226002,0.00739585,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.00500888,0.152372,0.0203723,0.0257725,0.00534625,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.00185183,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.0384217,0.0339656,0.140533,0.0997756,0.00352872,0.103667,0.113069,0.025556,0.16791,0.09066,0.0597157,0.166967,0.188651,0.0813902,0.0182671,0.156261,0.311847,0.0362615,0.0590944,0.247324,0.178389,0.0257622,0.231073,0.0972686,0.619906,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.00858901,0.43956,0.0789454,0.10748,0.448797,0.197484,0.396996,0.0750251,0.406019,0.381071,0.216033,0.000699353,0.432035,0.366326,0.390366,0.48809,0.153829,0.117158,0.522904,0.158867,0.000283689,0.227104,0.166658,0.617852,0.00161115,0.284625,0.0344717,0.55194,0.375373,0.28907,0.164197,0.128922,0.287881,0.0556235,0.478174,0.0642229,0.132529,0.258219,0.446557,0.032364,0.442897,0.390974,0.149257,0.029557,0.161598,0.164332,0.277094,0.496032,0.0795555,0.0805771,0.200632,0.477353,0.199161,0.0508568,0.0175763,0.0222555,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.0997241,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.0101317,0.314429,0.0175523,0.282286,0.78,0.616388,0.0978616,0.516511,0.322213,0.00012402,0.0655189,0.61031,0.0871388,0.169614,0.00143411,0.537348,0.222037,0.102227,0.10205,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.00583733,0.166905,0.19783,0.0833851,0.056391,0.48065,0.175199,0.332919,0.373557,0.523625,0.000216517,0.365487,0.178743,0.0140668,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.0516603,0.15059,0.386538,0.035296,0.250964,0.383276,0.0243456,0.504711,0.220231,0.509064,0.00149391,0.191517,0.463751,0.235208,0.307334,0.459728,0.283463,0.0102434,0.472935,0.0932845,0.273281,0.0780405,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.387069,0.0627969,0.52832,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.00449563,0.000350724,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.00700099,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.0377035,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.00940743,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00129531,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.0594776,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.00196532,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.00995227,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.0151713,0.164202,0.100942,0.062995,0.10299,0.14193,0.0800546,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.00100585,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.00713165,0.159052,0.0183114,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0585224,0.0619218,0.1751,0.000828043,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,2.34834e-05,0.063292,0.254773,0.000371199,0.0865903,0.0380459,0.130174,0.219944,0.713218,0.451377,0.019623,0.563047,0.0319444,0.00156905,0.335423,0.0790073,0.261553,0.446302,0.373681,0.053682,0.49143,0.330703,0.0018019,0.061507,0.178727,0.615744,0.271958,0.292154,0.405773,0.0921263,0.0582602,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.0620388,0.218329,0.000281575,0.376924,0.463191,0.0883629,0.528324,0.520763,0.370782,0.415647,0.00475652,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.0026262,0.0447111,0.314747,0.21363,0.291709,0.120054,0.576651,0.416816,0.292835,0.476744,0.439556,0.0807167,0.213592,0.608919,0.18237,0.126021,0.0964442,1.43819e-05,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.00341096,0.503058,0.513852,0.522083,0.248634,0.0439966,0.00419907,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.0582356,0.0583074,0.412837,0.671377,0.546839,0.551561,0.448039,0.0258593,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.0897888,0.00223439,0.50215,0.294698,0.34331,0.0282052,0.00514398,0.0605279,0.00120886,0.278044,0.00692297,0.428671,0.228096,0.336314,0.19763,0.15631,0.00172609,0.104858,0.48267,0.420626,0.516462,3.89235e-05,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.0538047,0.206222,0.00713629,0.284166,0.113671,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.0385377,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.171389,0.257493,0.347298,0.539392,0.34988,0.475069,0.404569,0.0847452,0.0793778,0.0562865,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.0223093,0.116981,0.00303204,7.22648e-05,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.00461664,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.0238665,0.0200986,0.00934729,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.000207621,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.166024,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.0154037,0.201033,0.0488949,0.174921,0.00132287,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.00681584,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.00136406,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.226002,0.00739585,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.0277579,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.00500888,0.152372,0.0203723,0.0257725,0.00534625,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.00185183,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.0384217,0.0339656,0.140533,0.0997756,0.00352872,0.103667,0.113069,0.025556,0.16791,0.09066,0.0597157,0.166967,0.188651,0.0813902,0.0182671,0.156261,0.311847,0.0362615,0.0590944,0.247324,0.178389,0.0257622,0.231073,0.0972686,0.619906,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.00858901,0.43956,0.0789454,0.10748,0.448797,0.197484,0.396996,0.0750251,0.406019,0.381071,0.216033,0.000699353,0.432035,0.366326,0.390366,0.48809,0.153829,0.117158,0.522904,0.158867,0.000283689,0.227104,0.166658,0.617852,0.00161115,0.284625,0.0344717,0.55194,0.375373,0.28907,0.164197,0.128922,0.287881,0.0556235,0.478174,0.0642229,0.132529,0.258219,0.446557,0.032364,0.442897,0.390974,0.149257,0.029557,0.161598,0.164332,0.277094,0.496032,0.0795555,0.0805771,0.200632,0.477353,0.199161,0.0508568,0.0175763,0.0222555,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.0997241,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.0101317,0.314429,0.0175523,0.282286,0.78,0.616388,0.0978616,0.516511,0.322213,0.00012402,0.0655189,0.61031,0.0871388,0.169614,0.00143411,0.537348,0.222037,0.102227,0.10205,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.00583733,0.166905,0.19783,0.0833851,0.056391,0.48065,0.175199,0.332919,0.373557,0.523625,0.000216517,0.365487,0.178743,0.0140668,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.0516603,0.15059,0.386538,0.035296,0.250964,0.383276,0.0243456,0.504711,0.220231,0.509064,0.00149391,0.191517,0.463751,0.235208,0.307334,0.459728,0.283463,0.0102434,0.472935,0.0932845,0.273281,0.0780405,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.387069,0.0627969,0.52832,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.00449563,0.000350724,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.00700099,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.0577193,0.0377035,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.00940743,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | ||
|tfbs_overrepresentation_for_novel_motifs=0.699513,1.40091,1.65103,0.855819,0.641468,0.853988,0.937929,0.494933,1.23181,1.18351,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,2.00385,0.824321,0.69094,1.26332,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,1.55576,0.388328,0.795576,1.21459,0.534793,0.439574,0.599922,0.137917,0.596053,0.855276,0.567465,0.469078,0.598234,0.777097,0.259059,0.63803,0.151453,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,1.7986,0.502203,0.886337,1.45054,2.87582,1.87308,0.396746,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,1.55552,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,1.54991,0.560075,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,2.36218,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,2.60433,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,1.54007,0.250511,1.37083,1.21015,0.941179,1.78371,1.03563,0.624795,0.744018,2.84192,1.56892,1.35169,1.19946,1.69998,1.11698,0.960047,0.524529,0.936473,1.96295 | |||
}} | }} | ||
Revision as of 16:36, 26 November 2012
Full id: C4210_granulocyte_Neutrophils_Dendritic_acute_CD4_Eosinophils_CD14
Phase1 CAGE Peaks
| Hg19::chr2:24149918..24149974,- | p1@ATAD2B |
| Hg19::chr2:24149977..24150007,- | p2@ATAD2B |
| Hg19::chr3:47205548..47205638,- | p1@SETD2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0018024 | histone-lysine N-methyltransferase activity | 0.0313757618939722 |
| GO:0016278 | lysine N-methyltransferase activity | 0.0313757618939722 |
| GO:0016279 | protein-lysine N-methyltransferase activity | 0.0313757618939722 |
| GO:0042054 | histone methyltransferase activity | 0.0313757618939722 |
| GO:0008276 | protein methyltransferase activity | 0.0313757618939722 |
| GO:0008170 | N-methyltransferase activity | 0.0313757618939722 |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | 0.0462323100263678 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 9.83e-21 | 114 |
| hematopoietic system | 8.13e-13 | 98 |
| blood island | 8.13e-13 | 98 |
| hemolymphoid system | 6.78e-12 | 108 |
| neural tube | 3.89e-09 | 56 |
| neural rod | 3.89e-09 | 56 |
| future spinal cord | 3.89e-09 | 56 |
| neural keel | 3.89e-09 | 56 |
| immune system | 1.59e-08 | 93 |
| regional part of nervous system | 1.80e-08 | 53 |
| regional part of brain | 1.80e-08 | 53 |
| bone element | 7.47e-08 | 82 |
| regional part of forebrain | 7.92e-08 | 41 |
| forebrain | 7.92e-08 | 41 |
| anterior neural tube | 7.92e-08 | 41 |
| future forebrain | 7.92e-08 | 41 |
| central nervous system | 1.19e-07 | 81 |
| bone marrow | 1.40e-07 | 76 |
| nervous system | 1.92e-07 | 89 |
| brain | 2.54e-07 | 68 |
| future brain | 2.54e-07 | 68 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BCLAF1#9774 | 2 | 14.4350984067479 | 0.00620114743554613 | 0.0273913735840383 |
| BRCA1#672 | 2 | 13.4561537621492 | 0.00711980771608456 | 0.0296355505185188 |
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.019048935222739 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0280229439124575 |
| CTCFL#140690 | 2 | 13.1643162393162 | 0.00743336703699601 | 0.0306863283124561 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0326325510055886 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0323153100400177 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.0321468466638721 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0463545769407588 |
| ELK4#2005 | 2 | 10.823787772312 | 0.0109128471951648 | 0.0402076782690967 |
| ETS1#2113 | 3 | 9.72876092220234 | 0.00108584009258484 | 0.00763766523635963 |
| FOSL2#2355 | 2 | 11.2868004030411 | 0.010053458697312 | 0.0376834214868666 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.0154469411078265 |
| HMGN3#9324 | 3 | 8.17854772335059 | 0.00182776694216421 | 0.0108918265247454 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0128400408497632 |
| MEF2C#4208 | 2 | 27.5409029950827 | 0.00172911993836969 | 0.0106503631306554 |
| NFKB1#4790 | 3 | 5.48806342419384 | 0.00604938181565543 | 0.0270181058606414 |
| NR3C1#2908 | 2 | 9.98201555411536 | 0.0127847436554717 | 0.0460565638520165 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0173291562482913 |
| RXRA#6256 | 3 | 20.0746171391333 | 0.000123573034843222 | 0.00165501977250466 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0277521476038459 |
| SIX5#147912 | 2 | 11.391143570306 | 0.00987382008142903 | 0.0370846152222234 |
| SMARCB1#6598 | 2 | 12.1684771874383 | 0.00867500222192174 | 0.0329985634125614 |
| SMC3#9126 | 2 | 10.0299552299552 | 0.012665637976747 | 0.0457695776842836 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0247125168843207 |
| SP2#6668 | 2 | 17.4356869958964 | 0.00427356848176974 | 0.0203236291001115 |
| TCF7L2#6934 | 3 | 10.7701765631373 | 0.000800318129839838 | 0.00615360562190553 |
| TFAP2A#7020 | 2 | 11.0124229153633 | 0.0105499065521556 | 0.0390246401643615 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0190784175239247 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0330156594556085 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
