FFCP PHASE1:Hg19::chr3:159557858..159557882,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29970 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15678 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENST00000472483_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_8_at_SCHIP1_5end | |||
|id=chr3:159557858..159557882,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.10e-13!25;CL:0000047!3.37e-10!8;CL:0000133!1.11e-09!59;CL:0000540!9.91e-08!6;CL:0000031!9.91e-08!6;CL:0000404!9.91e-08!6;CL:0000128!3.62e-07!7;CL:0000126!3.62e-07!7;CL:0000127!3.62e-07!7;CL:0002453!3.62e-07!7;CL:0000221!8.86e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.98e-11;6!CL:0000404;4.98e-11;6!CL:0002322;2.04e-08;5!CL:0002321;2.24e-08;15!CL:0002319;5.12e-08;25!CL:0000333;9.69e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.01e-14,8;CL:0000540,5.74e-11,6;CL:0000031,5.74e-11,6;CL:0000404,5.74e-11,6;CL:0002322,2.27e-08,5;CL:0002319,5.11e-08,25;CL:0000133,2.07e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.22e-18;82!CL:0000031;4.98e-11;6!UBERON:0006215;8.70e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.76e-73!94;UBERON:0001016!4.76e-73!94;UBERON:0001017!5.29e-68!82;UBERON:0005743!1.63e-67!86;UBERON:0001049!3.61e-63!57;UBERON:0005068!3.61e-63!57;UBERON:0006241!3.61e-63!57;UBERON:0007135!3.61e-63!57;UBERON:0002616!5.66e-55!59;UBERON:0000955!3.40e-53!69;UBERON:0006238!3.40e-53!69;UBERON:0003075!4.16e-51!86;UBERON:0007284!4.16e-51!86;UBERON:0002780!1.95e-48!41;UBERON:0001890!1.95e-48!41;UBERON:0006240!1.95e-48!41;UBERON:0002346!8.72e-48!90;UBERON:0003080!6.35e-47!42;UBERON:0007023!1.36e-46!115;UBERON:0004121!4.79e-43!169;UBERON:0000924!2.37e-41!173;UBERON:0006601!2.37e-41!173;UBERON:0001893!7.39e-41!34;UBERON:0002020!1.27e-40!34;UBERON:0003528!1.27e-40!34;UBERON:0002791!1.48e-39!33;UBERON:0003056!4.29e-39!61;UBERON:0001869!8.83e-39!32;UBERON:0000153!2.02e-35!129;UBERON:0007811!2.02e-35!129;UBERON:0000033!6.90e-34!123;UBERON:0000956!4.45e-30!25;UBERON:0000203!4.45e-30!25;UBERON:0002619!3.80e-27!22;UBERON:0001950!8.39e-25!20;UBERON:0003076!1.16e-16!15;UBERON:0003057!1.16e-16!15;UBERON:0004732!1.34e-14!13;UBERON:0000025!8.31e-14!194;UBERON:0004733!1.60e-13!12;UBERON:0002028!1.60e-13!12;UBERON:0007277!1.60e-13!12;UBERON:0002420!2.72e-12!9;UBERON:0007245!2.72e-12!9;UBERON:0010009!2.72e-12!9;UBERON:0010011!2.72e-12!9;UBERON:0000454!2.72e-12!9;UBERON:0002308!7.59e-12!9;UBERON:0000125!7.59e-12!9;UBERON:0000064!8.09e-11!219;UBERON:0000922!1.17e-10!612;UBERON:0000119!1.36e-10!312;UBERON:0002680!1.67e-10!9;UBERON:0001895!1.67e-10!9;UBERON:0010092!1.67e-10!9;UBERON:0004111!2.36e-10!241;UBERON:0000483!4.39e-10!309;UBERON:0009663!8.47e-10!7;UBERON:0000477!3.81e-09!286;UBERON:0000200!3.96e-09!6;UBERON:0000475!5.77e-09!365;UBERON:0001894!7.87e-09!7;UBERON:0006222!7.87e-09!7;UBERON:0001871!1.30e-08!7;UBERON:0000923!4.37e-08!604;UBERON:0005291!4.37e-08!604;UBERON:0006598!4.37e-08!604;UBERON:0002532!4.37e-08!604;UBERON:0002050!5.18e-08!605;UBERON:0005423!5.18e-08!605;UBERON:0001872!5.63e-08!5;UBERON:0000468!7.27e-08!659;UBERON:0000481!1.07e-07!347;UBERON:0002021!1.11e-07!5;UBERON:0000349!1.20e-07!5;UBERON:0002037!2.03e-07!6;UBERON:0006215!2.03e-07!6;UBERON:0002298!2.06e-07!8;UBERON:0000467!5.24e-07!625;UBERON:0000480!6.14e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.54e-50;34!UBERON:0002780;5.77e-50;41!UBERON:0001890;5.77e-50;41!UBERON:0003528;1.14e-49;34!UBERON:0002020;1.14e-49;34!UBERON:0001869;1.51e-49;32!UBERON:0002791;4.17e-49;32!UBERON:0000073;1.20e-46;53!UBERON:0002616;1.20e-46;53!UBERON:0000956;4.88e-42;25!UBERON:0000203;4.88e-42;25!UBERON:0002619;8.44e-41;22!UBERON:0001950;3.62e-37;20!UBERON:0000955;7.82e-32;68!UBERON:0001017;2.79e-30;75!UBERON:0001016;1.09e-28;83!UBERON:0002420;9.64e-18;9!UBERON:0007245;9.64e-18;9!UBERON:0010009;9.64e-18;9!UBERON:0010011;9.64e-18;9!UBERON:0000454;9.64e-18;9!UBERON:0000125;4.26e-17;9!UBERON:0002308;4.26e-17;9!UBERON:0009663;5.29e-14;7!UBERON:0004732;1.02e-13;13!UBERON:0000200;5.08e-13;6!UBERON:0001894;5.95e-13;7!UBERON:0007023;2.38e-12;114!UBERON:0004733;3.76e-12;12!UBERON:0002028;3.76e-12;12!UBERON:0011216;2.39e-11;132!UBERON:0001872;2.63e-11;5!UBERON:0002021;7.64e-11;5!UBERON:0002298;7.70e-11;6!UBERON:0001871;7.88e-11;6!UBERON:0000349;8.29e-11;5!UBERON:0000369;4.93e-09;4!UBERON:0002435;4.93e-09;4!UBERON:0000204;4.93e-09;4!UBERON:0002680;5.97e-08;9!UBERON:0001895;5.97e-08;9!UBERON:0003296;8.53e-08;4!UBERON:0010133;8.53e-08;4!UBERON:0002784;1.02e-07;4!UBERON:0001870;2.03e-07;3!UBERON:0005383;3.35e-07;3!UBERON:0005382;3.35e-07;3!UBERON:0000013;9.69e-07;5!UBERON:0002410;9.69e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.87e-91,89;UBERON:0001017,5.01e-87,81;UBERON:0001049,2.95e-86,56;UBERON:0005068,2.95e-86,56;UBERON:0006241,2.95e-86,56;UBERON:0007135,2.95e-86,56;UBERON:0000073,4.77e-81,53;UBERON:0002616,4.77e-81,53;UBERON:0002780,2.80e-70,41;UBERON:0001890,2.80e-70,41;UBERON:0003080,2.80e-70,41;UBERON:0006240,2.80e-70,41;UBERON:0000955,1.46e-67,68;UBERON:0006238,1.46e-67,68;UBERON:0003075,2.47e-61,82;UBERON:0007284,2.47e-61,82;UBERON:0001893,1.14e-58,34;UBERON:0003528,2.56e-58,34;UBERON:0002020,2.56e-58,34;UBERON:0002346,9.96e-58,86;UBERON:0001869,1.75e-55,32;UBERON:0002791,4.94e-55,32;UBERON:0003056,7.73e-51,61;UBERON:0010371,3.03e-49,104;UBERON:0004121,2.44e-46,171;UBERON:0000924,2.44e-46,171;UBERON:0006601,2.44e-46,171;UBERON:0000956,3.27e-42,25;UBERON:0000203,3.27e-42,25;UBERON:0002619,6.11e-41,22;UBERON:0001950,2.38e-37,20;UBERON:0007023,1.60e-36,114;UBERON:0010314,1.51e-33,132;UBERON:0011216,1.09e-32,223;UBERON:0002420,6.49e-18,9;UBERON:0007245,6.49e-18,9;UBERON:0010009,6.49e-18,9;UBERON:0010011,6.49e-18,9;UBERON:0000454,6.49e-18,9;UBERON:0000125,3.10e-17,9;UBERON:0002308,3.10e-17,9;UBERON:0003076,8.58e-17,15;UBERON:0003057,8.58e-17,15;UBERON:0000025,3.63e-16,192;UBERON:0009663,4.10e-14,7;UBERON:0004732,8.74e-14,13;UBERON:0000200,4.28e-13,6;UBERON:0001894,1.22e-12,7;UBERON:0006222,1.22e-12,7;UBERON:0004733,3.03e-12,12;UBERON:0002028,3.03e-12,12;UBERON:0007277,3.03e-12,12;UBERON:0001872,2.43e-11,5;UBERON:0002298,5.74e-11,6;UBERON:0002021,6.78e-11,5;UBERON:0001871,7.06e-11,6;UBERON:0000349,7.66e-11,5;UBERON:0004111,1.05e-10,240;UBERON:0000369,4.89e-09,4;UBERON:0002435,4.89e-09,4;UBERON:0000204,4.89e-09,4;UBERON:0010082,4.89e-09,4;UBERON:0000483,1.47e-08,306;UBERON:0000119,2.46e-08,309;UBERON:0002680,5.61e-08,9;UBERON:0001895,5.61e-08,9;UBERON:0010092,5.61e-08,9;UBERON:0000922,1.08e-07,592;UBERON:0003296,1.37e-07,4;UBERON:0010133,1.37e-07,4;UBERON:0002784,1.68e-07,4;UBERON:0001870,1.78e-07,3;UBERON:0005383,3.46e-07,3;UBERON:0005382,3.46e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0.626909442956176,7.15589967827642,0.958120975510189,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,2.34880351467878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,3.36305137788922,2.63384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70162670895322,0.886917589850256,0.702678285545008,1.11332214173056,0,0,0,0,0,1.19245312152671,1.14398982156026,1.85728750664782,0,0,0,0,0,0.275118041940067,0.417989933073621,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,3.5783037446801,1.62671520017326,1.24393266018445,1.00928340350251,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.33279862885353,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,1.15295962733569,0.50496973370552,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.63921722356376,6.50699269288109,4.63973287666617,5.19300422536481,5.10351001322531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.680374821106063,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0.275673144969061,0.107420244868274,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,6.1385338989926,0,3.93116049358842,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,13.9180670687282,4.92342957436795,0,0,0,0,0.276283915531148,0,0.715880777515084,0,0,0,0,0,0.0986434056369336,0,0,4.84666373047609,9.09127361986142,3.99227596002388,0,0,0,0,0,0,3.10269035917318,0,2.2571249341328,15.0576035588353,4.34147179051469,10.6807215421958,10.0627126537414,13.5951904718632,8.11725969469698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.353830258013357,1.22206028986725,0,0,0,3.90926571287927,0,4.2167600230561,0,0,0,0,0,4.28501866282686,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,1.80784592624426,0,0,9.93979496507296,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,7.80546375322726,4.92859364011175,1.27746588066972,0,0,0.558564802544508,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,11.1332156573302,3.26888174667781,1.44677833618517,2.33817042215297,2.07720169014593,0,0,7.35069635562098,0,0.0788057072991982,0.314727528809989,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,4.52490347265427,2.90911723833918,0,0,0,0.78602152549833,0.414239055347196,0,0,0.974340787047167,0,0,0,0,0,0,14.1770908794718,12.9347840796081,4.88244629755349,4.58727356552057,1.99672292766334,3.78788057942439,0,0.249960815924213,0,0,0,8.43002830452387,8.40541965942786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.94511275452442,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73209173823511,4.20516764447059,2.04445724412665,10.4841252664333,0,0,0,0,0,0,0.80057074828547,0,0,6.74406863512825,9.91876034279095,4.78901577171454,8.82000366235247,4.78936222821264,7.05403975135022,6.62050147090589,4.28308260777463,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,8.10451015420736,12.4972495778216,6.20060389503552,7.99039208443226,12.0334457984008,0,0,0,0,1.07140367175657,1.00885116665647,7.89055285507621,4.09791944432336,0,0.460935950223117,0,3.80630504670258,6.90614122409915,0,0,0.235479278551542,5.34193005714407,0,2.73947616152849,0,0,0.78624198594322,0,0,0.173858272302579,0,0.207216164163037,1.19502933965765,0,0.430227358820278,0.591660003652827,0.340853619036631,0,0,0,0,0,0,0,3.88457302312737,1.64260490969995,0,0,0,3.58111395290463,0,0,1.64910775118144,3.62310824560016,0.0771741581079447,0.218559560503957,0,0,0,6.0855624805633,2.37637120261669,3.8039015482506,0,0.0939839179798536,0.128915775947154,0,0,0,0,0.730336388246517,0,2.86679166302903,0,7.54705541119153,3.9271562130634,0,0,0,0,3.02799419604189,0,0,2.34574308406558,0.801652215796681,0.735159196278759,0,0.378893491091197,1.07185652062471,8.29169439458779,3.10298987585686,0.426467963801962,0.23806443146374,0.258355639344024,0.0620747142958579,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p8@SCHIP1 | |||
}} |
Revision as of 22:20, 21 January 2014
Short description: | p8@SCHIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SCHIP1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -5bp_to_ENST00000472483_5end |
EntrezGene: | SCHIP1 |
HGNC: | 15678 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.01e-14 | 8 |
neuron | 5.74e-11 | 6 |
neuroblast | 5.74e-11 | 6 |
electrically signaling cell | 5.74e-11 | 6 |
embryonic stem cell | 2.27e-08 | 5 |
neural cell | 5.11e-08 | 25 |
neurectodermal cell | 2.07e-07 | 59 |