FFCP PHASE1:Hg19::chr7:127672173..127672191,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64101 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15586 | |||
|TSSclassifier=strong | |||
|UniProt=C9JA92 | |||
|association_with_transcript=-13bp_to_ENST00000476782_5end | |||
|cluster_id=chr7:127672173..127672191,- | |||
|coexpression_cluster_id=C1767 | |||
|description=CAGE_peak_1_at_LRRC4_5end | |||
|id=chr7:127672173..127672191,- | |||
|ontology_enrichment_celltype=CL:0000766!8.38e-18!76;CL:0002057!1.10e-17!42;CL:0000860!2.75e-15!45;CL:0002194!2.97e-14!63;CL:0000576!2.97e-14!63;CL:0000040!2.97e-14!63;CL:0000559!2.97e-14!63;CL:0002009!1.01e-13!65;CL:0000839!2.86e-13!70;CL:0000557!9.28e-13!71;CL:0000763!5.67e-07!112;CL:0000049!5.67e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.12e-21;33!CL:0002057;4.12e-21;33!CL:0000576;1.80e-15;48!CL:0000473;2.94e-15;39!CL:0000234;2.94e-15;39!CL:0000766;6.21e-10;69!CL:0000094;2.31e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.64e-21,72;CL:0000860,2.33e-20,42;CL:0002057,2.33e-20,42;CL:0000473,7.93e-18,48;CL:0000234,7.93e-18,48;CL:0002194,1.15e-16,59;CL:0000576,1.15e-16,59;CL:0000040,1.15e-16,59;CL:0000559,1.15e-16,59;CL:0002009,9.21e-16,61;CL:0000839,1.19e-14,66;CL:0000557,2.86e-14,67;CL:0000763,1.67e-10,108;CL:0000049,1.67e-10,108;CL:0000094,2.03e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;5.21e-15;42!UBERON:0006601;2.42e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-29!115;UBERON:0005743!2.20e-28!86;UBERON:0001049!2.10e-27!57;UBERON:0005068!2.10e-27!57;UBERON:0006241!2.10e-27!57;UBERON:0007135!2.10e-27!57;UBERON:0001017!1.99e-26!82;UBERON:0000073!3.06e-26!94;UBERON:0001016!3.06e-26!94;UBERON:0002780!1.44e-24!41;UBERON:0001890!1.44e-24!41;UBERON:0006240!1.44e-24!41;UBERON:0002346!1.31e-23!90;UBERON:0003080!1.78e-23!42;UBERON:0003075!1.12e-22!86;UBERON:0007284!1.12e-22!86;UBERON:0000955!1.93e-22!69;UBERON:0006238!1.93e-22!69;UBERON:0001893!7.98e-22!34;UBERON:0002616!1.34e-21!59;UBERON:0001869!3.38e-21!32;UBERON:0002020!4.25e-21!34;UBERON:0003528!4.25e-21!34;UBERON:0002791!5.06e-21!33;UBERON:0003056!8.32e-19!61;UBERON:0000956!1.02e-16!25;UBERON:0000203!1.02e-16!25;UBERON:0002619!4.14e-16!22;UBERON:0001950!7.05e-15!20;UBERON:0000153!7.88e-13!129;UBERON:0007811!7.88e-13!129;UBERON:0000468!1.92e-12!659;UBERON:0000033!2.55e-12!123;UBERON:0000924!3.33e-12!173;UBERON:0006601!3.33e-12!173;UBERON:0000467!1.45e-11!625;UBERON:0000922!1.79e-11!612;UBERON:0004121!1.90e-11!169;UBERON:0000480!2.13e-11!626;UBERON:0002193!5.82e-11!112;UBERON:0002050!1.23e-10!605;UBERON:0005423!1.23e-10!605;UBERON:0002390!1.51e-10!102;UBERON:0003061!1.51e-10!102;UBERON:0000923!2.25e-10!604;UBERON:0005291!2.25e-10!604;UBERON:0006598!2.25e-10!604;UBERON:0002532!2.25e-10!604;UBERON:0002371!1.64e-09!80;UBERON:0000025!7.18e-09!194;UBERON:0000062!6.83e-08!511;UBERON:0001474!1.32e-07!86;UBERON:0004111!3.69e-07!241;UBERON:0002405!7.15e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.56e-27;22!UBERON:0001869;8.90e-27;32!UBERON:0001893;3.62e-26;34!UBERON:0001950;8.94e-25;20!UBERON:0002791;9.66e-25;32!UBERON:0003528;1.34e-23;34!UBERON:0002020;1.34e-23;34!UBERON:0002780;5.26e-23;41!UBERON:0001890;5.26e-23;41!UBERON:0000956;9.10e-23;25!UBERON:0000203;9.10e-23;25!UBERON:0000073;5.38e-20;53!UBERON:0002616;5.38e-20;53!UBERON:0001017;1.28e-15;75!UBERON:0000955;2.99e-14;68!UBERON:0001016;1.05e-12;83!UBERON:0000200;1.72e-09;6!UBERON:0002420;1.47e-08;9!UBERON:0007245;1.47e-08;9!UBERON:0010009;1.47e-08;9!UBERON:0010011;1.47e-08;9!UBERON:0000454;1.47e-08;9!UBERON:0001872;4.77e-08;5!UBERON:0001871;1.80e-07;6!UBERON:0000349;2.44e-07;5!UBERON:0002021;2.50e-07;5!UBERON:0007023;5.60e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.74e-37,56;UBERON:0005068,6.74e-37,56;UBERON:0006241,6.74e-37,56;UBERON:0007135,6.74e-37,56;UBERON:0000073,6.12e-36,53;UBERON:0002616,6.12e-36,53;UBERON:0001017,2.36e-35,81;UBERON:0002780,8.38e-33,41;UBERON:0001890,8.38e-33,41;UBERON:0003080,8.38e-33,41;UBERON:0006240,8.38e-33,41;UBERON:0001016,1.27e-32,89;UBERON:0001869,1.63e-30,32;UBERON:0001893,3.08e-30,34;UBERON:0000955,5.58e-30,68;UBERON:0006238,5.58e-30,68;UBERON:0002791,5.88e-28,32;UBERON:0003528,1.73e-27,34;UBERON:0002020,1.73e-27,34;UBERON:0003075,4.18e-27,82;UBERON:0007284,4.18e-27,82;UBERON:0002619,4.76e-27,22;UBERON:0002346,2.78e-26,86;UBERON:0007023,6.95e-26,114;UBERON:0003056,1.71e-25,61;UBERON:0001950,6.12e-25,20;UBERON:0000956,6.10e-23,25;UBERON:0000203,6.10e-23,25;UBERON:0010371,1.50e-19,104;UBERON:0004121,1.54e-16,171;UBERON:0000924,1.54e-16,171;UBERON:0006601,1.54e-16,171;UBERON:0010314,1.89e-14,132;UBERON:0011216,1.36e-11,223;UBERON:0002405,1.64e-11,93;UBERON:0002193,1.67e-11,108;UBERON:0002371,2.51e-11,76;UBERON:0002390,6.05e-11,98;UBERON:0003061,6.05e-11,98;UBERON:0001474,9.28e-10,82;UBERON:0000200,1.64e-09,6;UBERON:0002050,1.89e-09,564;UBERON:0000922,2.15e-09,592;UBERON:0000923,2.20e-09,560;UBERON:0010316,2.20e-09,560;UBERON:0005291,2.20e-09,560;UBERON:0006598,2.20e-09,560;UBERON:0010317,2.20e-09,560;UBERON:0002532,2.20e-09,560;UBERON:0005423,5.22e-09,581;UBERON:0002420,7.48e-09,9;UBERON:0007245,7.48e-09,9;UBERON:0010009,7.48e-09,9;UBERON:0010011,7.48e-09,9;UBERON:0000454,7.48e-09,9;UBERON:0001872,4.68e-08,5;UBERON:0004765,4.89e-08,90;UBERON:0000025,7.05e-08,192;UBERON:0001871,1.65e-07,6;UBERON:0002021,1.88e-07,5;UBERON:0000349,2.09e-07,5;UBERON:0001434,5.64e-07,100 | |||
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| |||
|short_description=p1@LRRC4 | |||
}} |
Latest revision as of 02:54, 16 September 2015
Short description: | p1@LRRC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC4_5end |
Coexpression cluster: | C1767_occipital_temporal_cerebellum_postcentral_insula_amygdala_paracentral |
Association with transcript: | -13bp_to_ENST00000476782_5end |
EntrezGene: | LRRC4 |
HGNC: | 15586 |
UniProt: | C9JA92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.64e-21 | 72 |
classical monocyte | 2.33e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.33e-20 | 42 |
defensive cell | 7.93e-18 | 48 |
phagocyte | 7.93e-18 | 48 |
monopoietic cell | 1.15e-16 | 59 |
monocyte | 1.15e-16 | 59 |
monoblast | 1.15e-16 | 59 |
promonocyte | 1.15e-16 | 59 |
macrophage dendritic cell progenitor | 9.21e-16 | 61 |
myeloid lineage restricted progenitor cell | 1.19e-14 | 66 |
granulocyte monocyte progenitor cell | 2.86e-14 | 67 |
myeloid cell | 1.67e-10 | 108 |
common myeloid progenitor | 1.67e-10 | 108 |
granulocyte | 2.03e-08 | 8 |