FFCP PHASE1:Hg19::chr19:35521437..35521485,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:35521437..35521485,+ to FFCP PHASE1:Hg19::chr19:35521437..35521485,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6324 | |EntrezGene=6324 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10586 | |HGNC=10586 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-48bp_to_uc002nxo.1,uc002nxp.2,uc010xsg.1_5end | |||
|cluster_id=chr19:35521437..35521485,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_SCN1B_5end | |||
|id=chr19:35521437..35521485,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.06e-16!119;CL:0000115!1.73e-13!35;CL:0000213!4.12e-13!57;CL:0000215!4.12e-13!57;CL:0002139!7.05e-12!24;CL:0002078!2.34e-11!44;CL:0000071!1.13e-09!18;CL:0002546!1.13e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.15e-16;24!CL:0000115;1.76e-13;36!CL:0000071;1.23e-12;18!CL:0002078;7.26e-10;45!CL:0000213;3.70e-09;58!CL:0000215;3.70e-09;58!CL:1000413;5.94e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.82e-16,36;CL:0002139,2.51e-16,24;CL:0000213,1.16e-15,58;CL:0000215,1.16e-15,58;CL:0002078,1.01e-13,45;CL:0000071,3.59e-13,18;CL:0002546,3.59e-13,18;CL:0000222,4.82e-12,121;CL:1000413,3.07e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.23e-12;18!UBERON:0006601;6.87e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!1.52e-29!194;UBERON:0004111!2.12e-28!241;UBERON:0000477!1.63e-27!286;UBERON:0000483!2.93e-27!309;UBERON:0000119!3.17e-26!312;UBERON:0007023!5.51e-25!115;UBERON:0001049!7.32e-21!57;UBERON:0005068!7.32e-21!57;UBERON:0006241!7.32e-21!57;UBERON:0007135!7.32e-21!57;UBERON:0003075!3.28e-20!86;UBERON:0007284!3.28e-20!86;UBERON:0002616!4.98e-18!59;UBERON:0002346!1.57e-17!90;UBERON:0005743!1.82e-17!86;UBERON:0000955!1.18e-16!69;UBERON:0006238!1.18e-16!69;UBERON:0001017!4.50e-16!82;UBERON:0000475!4.77e-16!365;UBERON:0000073!3.09e-15!94;UBERON:0001016!3.09e-15!94;UBERON:0000481!3.32e-15!347;UBERON:0002780!5.81e-15!41;UBERON:0001890!5.81e-15!41;UBERON:0006240!5.81e-15!41;UBERON:0000055!1.80e-14!69;UBERON:0003080!4.56e-14!42;UBERON:0003914!6.42e-14!118;UBERON:0002049!9.41e-14!79;UBERON:0007798!9.41e-14!79;UBERON:0004872!3.41e-13!84;UBERON:0000468!1.12e-12!659;UBERON:0002020!1.29e-12!34;UBERON:0003528!1.29e-12!34;UBERON:0001893!1.34e-12!34;UBERON:0001981!1.89e-12!60;UBERON:0007500!1.89e-12!60;UBERON:0004537!1.89e-12!60;UBERON:0006965!1.89e-12!60;UBERON:0002791!5.77e-12!33;UBERON:0003056!1.32e-11!61;UBERON:0001869!1.41e-11!32;UBERON:0000033!2.21e-11!123;UBERON:0001009!4.23e-11!113;UBERON:0000153!1.21e-10!129;UBERON:0007811!1.21e-10!129;UBERON:0004535!5.62e-10!110;UBERON:0000467!7.01e-10!625;UBERON:0005256!9.52e-10!143;UBERON:0001986!1.13e-09!18;UBERON:0004638!1.13e-09!18;UBERON:0004852!1.13e-09!18;UBERON:0000480!1.14e-09!626;UBERON:0004121!1.89e-09!169;UBERON:0002619!2.52e-09!22;UBERON:0000490!2.79e-09!138;UBERON:0001950!1.15e-08!20;UBERON:0000924!2.49e-08!173;UBERON:0006601!2.49e-08!173;UBERON:0003076!3.19e-08!15;UBERON:0003057!3.19e-08!15;UBERON:0000956!6.70e-08!25;UBERON:0000203!6.70e-08!25;UBERON:0007100!8.91e-08!27;UBERON:0000487!1.62e-07!22;UBERON:0000914!2.64e-07!83;UBERON:0002329!2.64e-07!83;UBERON:0003077!2.64e-07!83;UBERON:0003059!2.64e-07!83;UBERON:0007282!2.64e-07!83;UBERON:0009618!2.64e-07!83;UBERON:0007285!2.64e-07!83;UBERON:0004732!3.05e-07!13;UBERON:0000922!4.68e-07!612;UBERON:0003103!4.78e-07!69;UBERON:0004290!7.22e-07!70;UBERON:0004733!7.74e-07!12;UBERON:0002028!7.74e-07!12;UBERON:0007277!7.74e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.78e-15;34!UBERON:0000073;3.40e-15;53!UBERON:0002616;3.40e-15;53!UBERON:0003528;7.31e-15;34!UBERON:0002020;7.31e-15;34!UBERON:0002780;1.09e-14;41!UBERON:0001890;1.09e-14;41!UBERON:0001869;1.72e-14;32!UBERON:0002791;2.74e-14;32!UBERON:0002619;2.24e-13;22!UBERON:0004638;1.23e-12;18!UBERON:0001986;1.23e-12;18!UBERON:0004852;1.23e-12;18!UBERON:0001950;1.43e-12;20!UBERON:0000956;6.25e-11;25!UBERON:0000203;6.25e-11;25!UBERON:0000955;1.46e-10;68!UBERON:0000487;3.37e-10;22!UBERON:0001017;4.42e-10;75!UBERON:0006914;2.54e-09;25!UBERON:0007023;7.50e-09;114!UBERON:0000125;7.98e-09;9!UBERON:0002308;7.98e-09;9!UBERON:0001016;2.72e-08;83!UBERON:0002420;3.44e-08;9!UBERON:0007245;3.44e-08;9!UBERON:0010009;3.44e-08;9!UBERON:0010011;3.44e-08;9!UBERON:0000454;3.44e-08;9!UBERON:0004732;5.38e-08;13!UBERON:0007100;1.29e-07;25!UBERON:0004733;1.84e-07;12!UBERON:0002028;1.84e-07;12!UBERON:0000200;2.07e-07;6!UBERON:0010314;2.93e-07;132!UBERON:0000055;3.72e-07;65!UBERON:0009663;4.97e-07;7!UBERON:0003915;5.94e-07;9!UBERON:0004700;5.94e-07;9!UBERON:0001917;5.94e-07;9!UBERON:0002298;9.11e-07;6 | |||
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|phase1_expression=0.54503513781167,0.856402095563933,0.704772020479856,0,0.446961094427288,0.872338524100369,0,0,0,0,0.697801167972428,0,0.527533956456907,1.23766352960047,1.32558950291166,0,0.602694528023977,1.46062018077475,1.95173119516203,0.61560529038394,1.22400414746552,0.940364164434263,0,0.684372125364421,0.125542639594803,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0,0,0.895661896959697,1.29557466407592,3.34848237924443,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0.272906150057846,0,0,0.641858054152187,0,0,0.398927315243264,0,0.290209238628584,0,0,0,0,0.434377689410233,0,0.368277635987565,0.632924774881769,0,0,0.209658645508376,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0.786021525498329,0,0,0,0,0,0.111410456885174,0.589211814949674,0.221533894583621,0,0.128091319725675,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0.267440195783507,0.434473211648397,2.43806866313962,6.03630773733273,1.66221330396589,1.0843174571537,0.50133791063589,2.17269778441236,4.7717156823066,9.24606253575008,0,1.10864698731282,0.614843499851882,3.79839318943367,0,0,0,0.174129737299267,0.26591592103773,0,0,0,3.9752481473341,3.4409383804245,3.81854551768354,7.34900324501212,6.29249154314859,3.85165258716094,1.8809546988313,5.42675194255591,2.13459757612026,1.00416183829401,1.61131726843659,6.0821768457481,4.63717909341522,1.47065232138347,3.24056779152704,1.87529429396568,5.83776368828041,3.82879033643296,3.06633274931766,7.59412527654503,5.1296488300514,1.31780417436063,0,0,0.993943903390637,0.633152558322899,0.794455084879313,0.286836620748814,1.77334191099179,1.12135520028461,0,3.20667812942308,1.55605517699883,0.67355336034844,0.490385709340376,0.302714855289863,0,0,2.80944069147288,1.71141546463335,2.24173020827702,0.822041490506354,0,0.280901613404497,0.61246251376468,1.71968044236475,1.23990937410919,2.37600571456411,0.247266929278557,0.910161361938026,4.31170885089743,0.336672227908132,1.25118519871964,0.831192346452549,3.07284334616587,0.612975591598039,1.05166641234618,0.907457465280168,0.538168907066586,0.640672166455702,0.211931901159562,1.20036438433761,0.92747276314595,0.257640540045629,1.67505170698431,0,0.292311015483596,0.504867548488229,0.552299391853796,0.161646056818812,0,1.41052937518696,1.3564847384839,0,0,0,1.09776335516636,1.19276791489337,1.51052125730374,1.34759371519982,1.26160425437814,1.45990943630332,1.56449532329816,1.28648187638577,1.38134921352481,0.464367928031979,3.60939740834793,0,0,0.241011029883482,0.110293972732394,0.217879444092406,0.237270619111097,0,0.392442930250692,0,9.59602091012043,2.80483547606892,0.8231480226628,1.47008711385542,0,1.96565443335525,2.36315962672562,0,0,0.514703430895577,0.109750285408626,1.1240175325762,0,0.277765335475589,0.325808305310325,0,0,0.115930404975077,0.352226082707465,3.17606185074362,4.62985512576611,2.47330397904978,2.37061319387782,1.71697232418975,0.984868024349589,0.234004265139238,0.445893486866185,0,0.335964256397719,0,0.0895585227028483,0,0,0,0.352193736052904,2.28060927094849,2.88239906833923,2.27236380167484,0.952468414382536,0.381988425558278,0,0,0.411309970813294,1.50171528921959,0.857479297891735,0.112131084345361,0,0,1.55126058909333,7.15312891703765,1.690605505112,1.32969058292435,2.08014873822732,1.28603687131071,0,0.266422179016099,2.00169191121407,0.542621605391443,2.46972101034231,0.65147236858747,1.77695974371273,1.58390374586686,5.72734816413214,2.61460037580088,2.99918973546171,1.2162378064119,1.50677127429638,0,1.19812427745791,0,2.85273810081437,0.723906533337896,0.410952645100767,0.716243852959582,0,0.197030760201927,0.646882724578552,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0.613457458595699,3.50119364741774,1.08506009479894,0.415941723061614,0.535286966391485,0.157702415033935,0.117141414992713,0.601892199455438,4.5481500811197,0,0.664225598535437,0.737476674166813,1.91143951829782,1.95801157462741,0.343143423810856,0.206768026122887,0,0.320182673410333,0,0,0,0.744323423456331,0,1.96462066103151,0.256278298511402,0,0.321707842287215,1.48418066444991,0.308419387605311,0.177561725313127,0.410635780069046,1.55776328755086,0.232420756919918,0.241718899183244,0.200506470303285,0,0.459257792658427,0.910455840033585,1.96686622439136,0.451199612907412,0.539107359730903,3.13739907670742,0,0.527758144464379,3.4120015221269,1.70093705276516,0.431831832204279,1.54227252690289,1.35473218771926,3.01013864312912,0.254876273045038,1.66215201785745,0.447749509444357,0,0,1.28225062558195,1.96808787419823,3.25378394664303,1.03041011647722,0.183138929636687,0.330037999682352,0.574265537996172,0,1.6068392984416,0.870036464629098,0.308097234229289,0.614014698904518,0.137836572484531,0.537101224341368,0.870100163485371,0.0852266274161009,0.534192213880424,0,0,0.127612712494584,0,0.929691098594572,0.31481234683064,4.8792608911242,0,0.532306030317022,3.47973196830029,1.11194531462352,0.429374660225974,0.7443167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| ||
|short_description=p2@SCN1B | |||
}} | }} |
Latest revision as of 09:26, 17 September 2015
Short description: | p2@SCN1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCN1B_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -48bp_to_uc002nxo.1, uc002nxp.2, uc010xsg.1_5end |
EntrezGene: | SCN1B |
HGNC: | 10586 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.82e-16 | 36 |
endothelial cell of vascular tree | 2.51e-16 | 24 |
lining cell | 1.16e-15 | 58 |
barrier cell | 1.16e-15 | 58 |
meso-epithelial cell | 1.01e-13 | 45 |
blood vessel endothelial cell | 3.59e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.59e-13 | 18 |
mesodermal cell | 4.82e-12 | 121 |
endothelial cell of artery | 3.07e-07 | 9 |