FFCP PHASE1:Hg19::chr1:95285896..95285961,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:95285896..95285961,+ to FFCP PHASE1:Hg19::chr1:95285896..95285961,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126969 | |EntrezGene=126969 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28689 | |HGNC=28689 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N4M1,E9PJY8,E9PJH2 | |UniProt=Q8N4M1,E9PJY8,E9PJH2 | ||
|association_with_transcript=0bp_to_ENST00000271227,ENST00000446120,ENST00000527077,ENST00000529450,NM_001114106,uc001dqv.3,uc001dqx.3,uc010otq.1,uc010otr.1_5end | |||
|cluster_id=chr1:95285896..95285961,+ | |||
|description=CAGE_peak_1_at_SLC44A3_5end | |||
|id=chr1:95285896..95285961,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.09e-16!254;CL:0000223!1.74e-13!59;CL:0002076!1.97e-11!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.99e-11;42!CL:1000507;2.05e-08;10!CL:1000494;2.05e-08;10!CL:0002251;1.74e-07;20!CL:1000497;4.16e-07;17!CL:0002518;4.16e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,2.49e-15,58;CL:0002076,4.56e-14,42;CL:0000066,3.54e-12,253;CL:1000507,2.70e-08,10;CL:1000494,2.70e-08,10;CL:0002251,2.59e-07,20;CL:1000497,4.86e-07,17;CL:0002518,4.86e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;8.33e-09;58 | |||
|ontology_enrichment_disease=DOID:305!5.83e-11!106;DOID:0050687!3.65e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.26e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.85e-24!115;UBERON:0000062!3.34e-19!511;UBERON:0004119!7.84e-18!169;UBERON:0000925!7.84e-18!169;UBERON:0006595!7.84e-18!169;UBERON:0000064!7.46e-17!219;UBERON:0000475!9.37e-17!365;UBERON:0000481!9.65e-17!347;UBERON:0001049!8.47e-16!57;UBERON:0005068!8.47e-16!57;UBERON:0006241!8.47e-16!57;UBERON:0007135!8.47e-16!57;UBERON:0005743!9.80e-16!86;UBERON:0002616!5.40e-15!59;UBERON:0001017!1.51e-14!82;UBERON:0004121!2.26e-14!169;UBERON:0004921!3.61e-14!129;UBERON:0004185!3.61e-14!129;UBERON:0001007!5.09e-14!155;UBERON:0001555!5.09e-14!155;UBERON:0007026!5.09e-14!155;UBERON:0000153!9.81e-14!129;UBERON:0007811!9.81e-14!129;UBERON:0000073!1.12e-13!94;UBERON:0001016!1.12e-13!94;UBERON:0000033!1.50e-13!123;UBERON:0000955!3.62e-13!69;UBERON:0006238!3.62e-13!69;UBERON:0000466!4.87e-13!126;UBERON:0000924!6.01e-13!173;UBERON:0006601!6.01e-13!173;UBERON:0003075!6.17e-13!86;UBERON:0007284!6.17e-13!86;UBERON:0000468!7.04e-13!659;UBERON:0000467!9.21e-13!625;UBERON:0004111!1.14e-12!241;UBERON:0000480!1.56e-12!626;UBERON:0005177!3.20e-12!107;UBERON:0000077!8.52e-12!130;UBERON:0002780!1.09e-11!41;UBERON:0001890!1.09e-11!41;UBERON:0006240!1.09e-11!41;UBERON:0000119!1.27e-11!312;UBERON:0003080!1.33e-11!42;UBERON:0000483!1.51e-11!309;UBERON:0001008!2.52e-11!45;UBERON:0000477!4.66e-11!286;UBERON:0002346!4.94e-11!90;UBERON:0006554!6.69e-11!44;UBERON:0000464!7.43e-11!104;UBERON:0000922!1.23e-10!612;UBERON:0005911!1.34e-10!82;UBERON:0003056!2.40e-10!61;UBERON:0002050!1.15e-09!605;UBERON:0005423!1.15e-09!605;UBERON:0009569!1.34e-09!113;UBERON:0000923!1.70e-09!604;UBERON:0005291!1.70e-09!604;UBERON:0006598!1.70e-09!604;UBERON:0002532!1.70e-09!604;UBERON:0000489!5.84e-09!32;UBERON:0000025!1.22e-08!194;UBERON:0002020!1.46e-08!34;UBERON:0003528!1.46e-08!34;UBERON:0002417!1.64e-08!61;UBERON:0000916!1.64e-08!61;UBERON:0001893!1.99e-08!34;UBERON:0002791!2.85e-08!33;UBERON:0000063!3.83e-08!97;UBERON:0001041!4.88e-08!98;UBERON:0001869!8.51e-08!32;UBERON:0005172!1.31e-07!55;UBERON:0005173!1.31e-07!55;UBERON:0002113!2.68e-07!27;UBERON:0003918!2.68e-07!27;UBERON:0005095!2.68e-07!27;UBERON:0007687!2.68e-07!27;UBERON:0001004!4.10e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.19e-11;30!UBERON:0001008;1.19e-11;30!UBERON:0002780;1.80e-10;41!UBERON:0001890;1.80e-10;41!UBERON:0000073;2.13e-10;53!UBERON:0002616;2.13e-10;53!UBERON:0000489;2.23e-10;29!UBERON:0004921;2.36e-09;33!UBERON:0007023;1.02e-08;114!UBERON:0003528;1.22e-08;34!UBERON:0002020;1.22e-08;34!UBERON:0002791;1.51e-08;32!UBERON:0001893;1.83e-08;34!UBERON:0004211;2.05e-08;10!UBERON:0009773;2.05e-08;10!UBERON:0001231;2.05e-08;10!UBERON:0004810;2.05e-08;10!UBERON:0001869;2.71e-08;32!UBERON:0002113;3.13e-08;24!UBERON:0011143;3.13e-08;24!UBERON:0002619;8.81e-08;22!UBERON:0005409;2.70e-07;22!UBERON:0001017;3.79e-07;75!UBERON:0000955;7.87e-07;68!UBERON:0001950;9.31e-07;20 | |||
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|phase1_expression=0.363356758541113,0.428201047781966,0.986680828671798,2.00146596706261,3.12872766099101,2.61701557230111,0,0,1.30592814099919,2.45733936501509,6.97801167972428,12.4511582114198,11.3419800638235,0.247532705920093,0.331397375727916,0.672325146451775,0,0,0,1.35433163884467,1.22400414746552,2.5076377718247,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0.464448369948228,3.67768489791571,1.8072355126695,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.222820913770347,0,0.443067789167242,0,0.128091319725675,0.390178042679635,0.164437904603676,0.276350017785848,0.579606171470105,0,0,0,0,0.383220493601921,0,0.506039384039006,0,0,0.950452044448374,0,0.383959833463255,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.869079113764942,0,1.94653948121054,1.60709189178915,0.665188192387692,1.49319135678314,6.35248516163906,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0.516833518338658,1.06729878806013,0.33472061276467,0.805658634218294,0.760272105718513,5.12530320851156,0.367663080345869,0,0.446498641420399,0.44905874525234,0.112611480483322,0,0,0,0,0,3.48875241714027,0,0,0.264818361626438,0,0.354668382198357,2.24271040056923,0,1.2333377420858,1.8672662123986,0.134710672069688,0.163461903113459,2.57307626996383,0.576175924479999,0.468642863667593,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0,0.910161361938026,0,0.505008341862199,0.250237039743928,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0.358779271377724,0.640672166455702,0.211931901159562,0,0.92747276314595,0.772921620136887,0.558350568994769,0.675105328965065,0.292311015483596,0.252433774244115,0.276149695926898,0.969876340912871,0.710019185033229,0.201504196455281,0.169560592310488,3.47869535693934,3.27295344709002,1.43402297694502,0.975789649036763,0.795178609928912,0.929551542956147,1.14027160516907,0.504641701751257,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0.473227200159376,0.168584690078102,0.241011029883482,0.55146986366197,0,0.474541238222193,0.674156540800822,0.784885860501384,0.769494313892781,1.4763109092493,0,2.057870056657,0,2.53510069643662,5.89696330006576,0.590789906681404,0,5.28850285735388,0.857839051492628,3.40225884766739,1.1240175325762,0.402115889646523,3.05541869023148,0,0,1.44331342025273,2.31860809950154,0.234817388471643,0.866198686566443,0,1.14152491340759,0.790204397959275,0,0,0,0,4.68669169933885,0.671928512795438,1.70130116690864,1.16426079513703,1.45316969256981,1.15014803749563,0,0,0,0.144119953416961,0,0.063497894292169,0.381988425558278,0,0,0.616964956219941,0.300343057843917,0.285826432630578,0.448524337381443,2.1798003441664,0.07333828582095,0.258543431515556,3.57656445851882,0,0,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0,0,0,1.59956785891291,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0,0,0,0,0,1.52456774533478,2.60279707715243,1.54657762555539,0.335032530668698,0,0,0,1.24324654030811,0.36807447515742,1.50051156317903,0.813795071099207,1.03985430765404,0.356857977594324,0.157702415033935,0.35142424497814,0.902838299183157,9.09630016223939,1.03473071292505,0,0,0.260650843404249,0.783204629850962,0.686286847621712,0,0,0,1.5156378572313,4.99306318531491,2.11673205330776,0.248107807818777,0.767309866440312,0.841980283299221,1.02511319404561,3.07024349440022,0.804269605718038,0,0.154209693802656,0.355123450626254,0.246381468041427,0,0,3.38406458856542,10.0253235151642,1.28913384510255,0.68888668898764,0.546273504020151,1.44236856455367,7.21919380651859,5.16002758599579,4.70609861506113,4.38417673959782,11.1884726626448,0,0,0.215915916102139,0,3.25135725052623,4.51520796469368,6.11703055308092,8.31076008928724,7.38786690583188,0,0,3.84675187674584,2.29610251989794,0.976135183992909,3.29731237272711,2.28923662045859,3.96045599618822,3.44559322797703,1.95018073810956,0,0.580024309752732,0.308097234229289,0,0,1.71872391789238,0.870100163485371,0.0852266274161009,2.93805717634233,6.44611169907815,1.34533047155574,8.93288987462089,1.8208400553999,0,0.94443704049192,0,0,1.06461206063404,0,0,0,2.232950216158,1.89827654831236,0.571890581771475,0.767693373934002,0.42793898803392,0,0,0.719489830333259,1.09814811894422,0.235624804691373,0,0,0,0.48763373908959,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0.578775534266688,1.9676842561399,0,0,0,0.430234056612155,0.196498082026242,0,0,0.844430541190656,0,0,0,1.73199802905922,3.35151137767894,1.08890984861323,3.38917682796405,9.90162357143829,6.73885902670502,6.20802214951346,8.95921260807142,0,0,0,0,0,0,0,0,0.534120355637366,7.69983884210687,2.20536194382929,0,0,0,0,0.399158742865633,0.766021480529467,0.211673582723883,0,0,0,0,0,0.169291777801603,0.1605880751037,0,0,5.15258017133647,0,0,0.166849141711909,0,0,0,0,0,0,6.36277837387947,1.31857361344705,0,0,0.568272293612826,7.1623345421307,14.8482340416319,6.14321404198464,4.97073823883149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| ||
|short_description=p1@SLC44A3 | |||
}} | }} |
Latest revision as of 23:27, 19 September 2015
Short description: | p1@SLC44A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC44A3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000271227, ENST00000446120, ENST00000527077, ENST00000529450, NM_001114106, uc001dqv.3, uc001dqx.3, uc010otq.1, uc010otr.1_5end |
EntrezGene: | SLC44A3 |
HGNC: | 28689 |
UniProt: | Q8N4M1E9PJY8E9PJH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 2.49e-15 | 58 |
endo-epithelial cell | 4.56e-14 | 42 |
epithelial cell | 3.54e-12 | 253 |
kidney tubule cell | 2.70e-08 | 10 |
nephron tubule epithelial cell | 2.70e-08 | 10 |
epithelial cell of alimentary canal | 2.59e-07 | 20 |
kidney cell | 4.86e-07 | 17 |
kidney epithelial cell | 4.86e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.26e-08 | 106 |