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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005240
|accession_numbers=CAGE;DRX008009;DRR008881;DRZ000306;DRZ001691;DRZ011656;DRZ013041
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.88!753.30!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.16!142.06!INSM1;;chr1:201979743..201979762,+!p1@ELF3!2.10!124.39!ELF3;;chr8:40755333..40755352,-!p1@ZMAT4!2.04!109.30!ZMAT4;;chr8:53166899..53166914,-!p3@ST18!1.77!57.97!ST18;;chr2:122042770..122042785,-!p1@TFCP2L1!1.75!55.40!TFCP2L1;;chrX:30327504..30327509,-!p1@NR0B1!1.75!54.80!NR0B1;;chr1:27240455..27240474,-!p1@NR0B2!1.74!54.50!NR0B2;;chr1:214161272..214161322,+!p1@PROX1!1.64!58.88!PROX1;;chr3:181429704..181429722,+!p1@SOX2!1.64!42.87!SOX2;;chr18:45935720..45935772,-!p1@ZBTB7C!1.64!42.57!ZBTB7C;;chr1:209979467..209979494,-!p1@IRF6!1.62!45.74!IRF6;;chr2:239148671..239148686,-!p1@HES6!1.58!131.94!HES6;;chr1:201979703..201979721,+!p2@ELF3!1.58!36.99!ELF3;;chr17:46667594..46667619,-!p1@HOXB3!1.58!36.99!HOXB3;;chr11:129245526..129245553,+!p1@BARX2!1.51!31.25!BARX2;;chr11:111249993..111250006,-!p1@POU2AF1!1.48!29.44!POU2AF1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.47!35.78!L3MBTL4;;chr6:28321909..28321965,-!p3@ZNF323!1.47!28.53!ZNF323;;chr17:46671108..46671147,-!p1@HOXB5!1.46!27.93!HOXB5;;chr17:46675558..46675577,-!p2@HOXB6!1.45!26.87!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.45!26.87!HOXB9;;chr18:55102628..55102646,+!p2@ONECUT2!1.44!26.72!ONECUT2;;chr17:46703826..46703845,-!p3@HOXB9!1.41!24.76!HOXB9;;chr14:38064429..38064486,-!p1@FOXA1!1.40!24.00!FOXA1;;chr17:46622440..46622477,-!p5@HOXB2!1.39!26.57!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.38!26.27!HOXB2;;chr2:45236540..45236577,-!p1@SIX2!1.38!23.25!SIX2;;chr17:46692457..46692484,-!p2@HOXB8!1.37!22.34!HOXB8;;chr2:5832508..5832524,+!p1@SOX11!1.35!21.44!SOX11;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.44!SIX1;;chr2:176972000..176972025,+!p4@HOXD11!1.33!20.53!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.33!20.53!HOXD10;;chr10:135122906..135122921,+!p4@ZNF511!1.33!20.23!ZNF511;;chr18:55102598..55102623,+!p1@ONECUT2!1.32!19.78!ONECUT2;;chr17:46622229..46622257,-!p6@HOXB2!1.31!22.49!HOXB2;;chr7:156803329..156803362,-!p1@MNX1!1.31!19.63!MNX1;;chr4:109090075..109090095,-!p2@LEF1!1.31!19.47!LEF1;;chr2:177001290..177001315,+!p1@HOXD3!1.30!19.17!HOXD3;;chr3:181429741..181429767,+!p2@SOX2!1.29!18.72!SOX2;;chr12:103352277..103352324,+!p2@ASCL1!1.28!18.27!ASCL1;;chr14:36989427..36989442,-!p1@NKX2-1!1.26!17.36!NKX2-1;;chr17:38020392..38020477,-!p1@IKZF3!1.24!16.45!IKZF3;;chr18:56940611..56940660,-!p1@RAX!1.23!16.15!RAX;;chr1:41827095..41827155,+!p1@FOXO6!1.22!21.29!FOXO6;;chr8:53162037..53162058,-!p5@ST18!1.21!15.10!ST18;;chr11:615570..615721,-!p2@IRF7!1.20!28.98!IRF7;;chr20:51588873..51588953,+!p1@TSHZ2!1.20!19.63!TSHZ2;;chr2:242556880..242556899,-!p5@THAP4!1.20!14.95!THAP4;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.49!HOXD8;;chr17:46690839..46690884,-!p1@HOXB8!1.19!14.49!HOXB8;;chr5:72744594..72744609,-!p1@FOXD1!1.18!63.56!FOXD1;;chr18:6414849..6414876,-!p2@L3MBTL4!1.17!13.74!L3MBTL4;;chr4:109089901..109089930,-!p3@LEF1!1.16!13.44!LEF1;;chr14:36989358..36989378,-!p3@NKX2-1!1.15!13.28!NKX2-1;;chr19:9609272..9609297,-!p1@ZNF560!1.15!12.98!ZNF560;;chr19:9811125..9811144,-!p2@ZNF812!1.15!12.98!ZNF812;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.38!FOXA2;;chr21:47063625..47063658,+!p1@PCBP3!1.12!53.29!PCBP3;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.40!SATB1;;chr2:176971685..176971700,+!p6@HOXD11!1.11!11.78!HOXD11;;chr20:62795799..62795819,+!p1@MYT1!1.11!11.78!MYT1;;chr3:40547564..40547616,+!p1@ZNF620!1.10!16.30!ZNF620;;chr16:52581025..52581072,-!p1@TOX3!1.10!11.62!TOX3;;chr1:214161328..214161348,+!p2@PROX1!1.10!11.47!PROX1;;chr6:36355513..36355578,-!p2@ETV7!1.09!14.19!ETV7;;chr6:126070769..126070801,+!p1@HEY2!1.09!12.98!HEY2;;chr10:135122868..135122893,+!p3@ZNF511!1.09!11.32!ZNF511;;chr12:54772960..54773015,-!p3@ZNF385A!1.07!52.69!ZNF385A;;chr14:29235961..29236008,+!p1@FOXG1!1.07!10.87!FOXG1;;chr6:28321971..28321995,-!p1@ZNF323!1.07!10.87!ZNF323;;chr11:63684602..63684664,-!p1@RCOR2!1.06!20.83!RCOR2;;chr6:1610293..1610310,+!p1@FOXC1!1.06!17.66!FOXC1;;chr11:64764435..64764449,-!p1@BATF2!1.06!14.64!BATF2;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.42!HOXD1;;chr3:114819101..114819121,-!p7@ZBTB20!1.05!10.27!ZBTB20;;chr19:9811101..9811112,-!p3@ZNF812!1.05!10.27!ZNF812;;chr1:40367530..40367597,-!p1@MYCL1!1.03!17.66!MYCL1;;chrX:85403445..85403479,+!p2@DACH2!1.03!9.66!DACH2;;chr7:15726296..15726315,-!p1@MEOX2!1.03!9.66!MEOX2;;chr20:31350184..31350200,+!p1@DNMT3B!1.02!20.08!DNMT3B;;chr20:22565185..22565223,-!p3@FOXA2!1.02!9.51!FOXA2;;chr20:51589133..51589159,+!p2@TSHZ2!1.02!9.51!TSHZ2;;chr2:95963052..95963106,+!p1@KCNIP3!1.01!9.21!KCNIP3;;chr8:60031762..60031803,-!p3@TOX!1.00!13.13!TOX;;chr1:3569072..3569093,+!p1@TP73!1.00!9.06!TP73;;chr1:151804244..151804310,-!p1@RORC!1.00!8.91!RORC;;chr1:40367668..40367684,-!p2@MYCL1!1.00!8.91!MYCL1;;chr3:71355163..71355209,-!p5@FOXP1!0.98!11.93!FOXP1;;chr1:23857698..23857733,-!p1@E2F2!0.97!15.40!E2F2;;chr3:114819073..114819100,-!p10@ZBTB20!0.97!8.30!ZBTB20;;chr6:1612300..1612324,+!p3@FOXC1!0.97!8.30!FOXC1;;chr17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|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.88!753.30!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.16!142.06!INSM1;;chr1:201979743..201979762,+!p1@ELF3!2.10!124.39!ELF3;;chr8:40755333..40755352,-!p1@ZMAT4!2.04!109.30!ZMAT4;;chr8:53166899..53166914,-!p3@ST18!1.77!57.97!ST18;;chr2:122042770..122042785,-!p1@TFCP2L1!1.75!55.40!TFCP2L1;;chrX:30327504..30327509,-!p1@NR0B1!1.75!54.80!NR0B1;;chr1:27240455..27240474,-!p1@NR0B2!1.74!54.50!NR0B2;;chr1:214161272..214161322,+!p1@PROX1!1.64!58.88!PROX1;;chr3:181429704..181429722,+!p1@SOX2!1.64!42.87!SOX2;;chr18:45935720..45935772,-!p1@ZBTB7C!1.64!42.57!ZBTB7C;;chr1:209979467..209979494,-!p1@IRF6!1.62!45.74!IRF6;;chr2:239148671..239148686,-!p1@HES6!1.58!131.94!HES6;;chr1:201979703..201979721,+!p2@ELF3!1.58!36.99!ELF3;;chr17:46667594..46667619,-!p1@HOXB3!1.58!36.99!HOXB3;;chr11:129245526..129245553,+!p1@BARX2!1.51!31.25!BARX2;;chr11:111249993..111250006,-!p1@POU2AF1!1.48!29.44!POU2AF1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.47!35.78!L3MBTL4;;chr6:28321909..28321965,-!p3@ZNF323!1.47!28.53!ZNF323;;chr17:46671108..46671147,-!p1@HOXB5!1.46!27.93!HOXB5;;chr17:46675558..46675577,-!p2@HOXB6!1.45!26.87!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.45!26.87!HOXB9;;chr18:55102628..55102646,+!p2@ONECUT2!1.44!26.72!ONECUT2;;chr17:46703826..46703845,-!p3@HOXB9!1.41!24.76!HOXB9;;chr14:38064429..38064486,-!p1@FOXA1!1.40!24.00!FOXA1;;chr17:46622440..46622477,-!p5@HOXB2!1.39!26.57!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.38!26.27!HOXB2;;chr2:45236540..45236577,-!p1@SIX2!1.38!23.25!SIX2;;chr17:46692457..46692484,-!p2@HOXB8!1.37!22.34!HOXB8;;chr2:5832508..5832524,+!p1@SOX11!1.35!21.44!SOX11;;chr14:61116183..61116208,-!p1@SIX1!1.34!77.44!SIX1;;chr2:176972000..176972025,+!p4@HOXD11!1.33!20.53!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.33!20.53!HOXD10;;chr10:135122906..135122921,+!p4@ZNF511!1.33!20.23!ZNF511;;chr18:55102598..55102623,+!p1@ONECUT2!1.32!19.78!ONECUT2;;chr17:46622229..46622257,-!p6@HOXB2!1.31!22.49!HOXB2;;chr7:156803329..156803362,-!p1@MNX1!1.31!19.63!MNX1;;chr4:109090075..109090095,-!p2@LEF1!1.31!19.47!LEF1;;chr2:177001290..177001315,+!p1@HOXD3!1.30!19.17!HOXD3;;chr3:181429741..181429767,+!p2@SOX2!1.29!18.72!SOX2;;chr12:103352277..103352324,+!p2@ASCL1!1.28!18.27!ASCL1;;chr14:36989427..36989442,-!p1@NKX2-1!1.26!17.36!NKX2-1;;chr17:38020392..38020477,-!p1@IKZF3!1.24!16.45!IKZF3;;chr18:56940611..56940660,-!p1@RAX!1.23!16.15!RAX;;chr1:41827095..41827155,+!p1@FOXO6!1.22!21.29!FOXO6;;chr8:53162037..53162058,-!p5@ST18!1.21!15.10!ST18;;chr11:615570..615721,-!p2@IRF7!1.20!28.98!IRF7;;chr20:51588873..51588953,+!p1@TSHZ2!1.20!19.63!TSHZ2;;chr2:242556880..242556899,-!p5@THAP4!1.20!14.95!THAP4;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.49!HOXD8;;chr17:46690839..46690884,-!p1@HOXB8!1.19!14.49!HOXB8;;chr5:72744594..72744609,-!p1@FOXD1!1.18!63.56!FOXD1;;chr18:6414849..6414876,-!p2@L3MBTL4!1.17!13.74!L3MBTL4;;chr4:109089901..109089930,-!p3@LEF1!1.16!13.44!LEF1;;chr14:36989358..36989378,-!p3@NKX2-1!1.15!13.28!NKX2-1;;chr19:9609272..9609297,-!p1@ZNF560!1.15!12.98!ZNF560;;chr19:9811125..9811144,-!p2@ZNF812!1.15!12.98!ZNF812;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.38!FOXA2;;chr21:47063625..47063658,+!p1@PCBP3!1.12!53.29!PCBP3;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.40!SATB1;;chr2:176971685..176971700,+!p6@HOXD11!1.11!11.78!HOXD11;;chr20:62795799..62795819,+!p1@MYT1!1.11!11.78!MYT1;;chr3:40547564..40547616,+!p1@ZNF620!1.10!16.30!ZNF620;;chr16:52581025..52581072,-!p1@TOX3!1.10!11.62!TOX3;;chr1:214161328..214161348,+!p2@PROX1!1.10!11.47!PROX1;;chr6:36355513..36355578,-!p2@ETV7!1.09!14.19!ETV7;;chr6:126070769..126070801,+!p1@HEY2!1.09!12.98!HEY2;;chr10:135122868..135122893,+!p3@ZNF511!1.09!11.32!ZNF511;;chr12:54772960..54773015,-!p3@ZNF385A!1.07!52.69!ZNF385A;;chr14:29235961..29236008,+!p1@FOXG1!1.07!10.87!FOXG1;;chr6:28321971..28321995,-!p1@ZNF323!1.07!10.87!ZNF323;;chr11:63684602..63684664,-!p1@RCOR2!1.06!20.83!RCOR2;;chr6:1610293..1610310,+!p1@FOXC1!1.06!17.66!FOXC1;;chr11:64764435..64764449,-!p1@BATF2!1.06!14.64!BATF2;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.42!HOXD1;;chr3:114819101..114819121,-!p7@ZBTB20!1.05!10.27!ZBTB20;;chr19:9811101..9811112,-!p3@ZNF812!1.05!10.27!ZNF812;;chr1:40367530..40367597,-!p1@MYCL1!1.03!17.66!MYCL1;;chrX:85403445..85403479,+!p2@DACH2!1.03!9.66!DACH2;;chr7:15726296..15726315,-!p1@MEOX2!1.03!9.66!MEOX2;;chr20:31350184..31350200,+!p1@DNMT3B!1.02!20.08!DNMT3B;;chr20:22565185..22565223,-!p3@FOXA2!1.02!9.51!FOXA2;;chr20:51589133..51589159,+!p2@TSHZ2!1.02!9.51!TSHZ2;;chr2:95963052..95963106,+!p1@KCNIP3!1.01!9.21!KCNIP3;;chr8:60031762..60031803,-!p3@TOX!1.00!13.13!TOX;;chr1:3569072..3569093,+!p1@TP73!1.00!9.06!TP73;;chr1:151804244..151804310,-!p1@RORC!1.00!8.91!RORC;;chr1:40367668..40367684,-!p2@MYCL1!1.00!8.91!MYCL1;;chr3:71355163..71355209,-!p5@FOXP1!0.98!11.93!FOXP1;;chr1:23857698..23857733,-!p1@E2F2!0.97!15.40!E2F2;;chr3:114819073..114819100,-!p10@ZBTB20!0.97!8.30!ZBTB20;;chr6:1612300..1612324,+!p3@FOXC1!0.97!8.30!FOXC1;;chr17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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aWA-hT.CNhs11812.10562-108A4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aWA-hT.CNhs11812.10562-108A4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aWA-hT.CNhs11812.10562-108A4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aWA-hT.CNhs11812.10562-108A4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aWA-hT.CNhs11812.10562-108A4.hg38.nobarcode.ctss.bed.gz
|id=FF:10562-108A4
|id=FF:10562-108A4
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206
|is_obsolete=
|is_obsolete=
|library_id=CNhs11812
|library_id_phase_based=2:CNhs11812
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10562
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10562
|name=small cell lung carcinoma cell line:WA-hT
|name=small cell lung carcinoma cell line:WA-hT
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11812,LSID829,release010,COMPLETED
|profile_hcage=CNhs11812,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 62: Line 78:
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|sample_cell_line=WA-hT
Line 83: Line 100:
|top_motifs=LMO2:2.82472247705;ZEB1:2.35060199783;MYOD1:2.30426764938;SNAI1..3:2.1993680861;DBP:2.12425723061;GFI1:2.08817657097;NFY{A,B,C}:2.0816043083;PAX3,7:1.97520520582;TFDP1:1.97475951492;ARID5B:1.86658156655;BREu{core}:1.83458702096;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74704520013;FOXA2:1.53736731038;XCPE1{core}:1.48578974696;ALX1:1.45801292024;bHLH_family:1.42194858657;E2F1..5:1.36983989966;ATF2:1.32773628972;NKX2-3_NKX2-5:1.27367447421;NRF1:1.26891193913;SP1:1.2508736051;JUN:1.24691675294;SOX{8,9,10}:1.22410416627;ZFP161:1.19338191546;VSX1,2:1.18088730283;FOX{I1,J2}:1.12918631722;ZNF143:1.11298470812;ADNP_IRX_SIX_ZHX:0.893030920107;SREBF1,2:0.891362441978;AHR_ARNT_ARNT2:0.886400461325;PPARG:0.884071194796;FOX{D1,D2}:0.869099313592;ELK1,4_GABP{A,B1}:0.838692996771;FOX{F1,F2,J1}:0.786385572957;RFX1:0.780275038343;HOX{A6,A7,B6,B7}:0.745525871279;FOXO1,3,4:0.712707039673;TFAP2B:0.707730716561;ATF6:0.704770874977;PAX5:0.688932894415;YY1:0.688622806365;ATF5_CREB3:0.649572715498;NKX3-1:0.617377603707;MED-1{core}:0.614693406071;MTE{core}:0.590550293364;IKZF2:0.580959629736;ATF4:0.577087357641;SOX2:0.57017167703;NHLH1,2:0.567543754659;HIC1:0.566894650076;PRRX1,2:0.530981020976;FOXP1:0.528748914365;NKX6-1,2:0.518121505474;PITX1..3:0.502749875486;ZBTB6:0.492869538957;IRF1,2:0.454901602791;EP300:0.44388952236;ZNF423:0.441766516649;PATZ1:0.439790819901;MYB:0.431154454397;T:0.413626767151;PAX6:0.385099612707;IRF7:0.377180377071;NANOG:0.370645836126;FOXP3:0.336660737369;NKX2-1,4:0.325460024535;FOXN1:0.320252118862;RREB1:0.311533776639;POU6F1:0.299436894121;MYFfamily:0.282217981016;REST:0.276399752224;PAX8:0.266726797849;TGIF1:0.257746286295;ESRRA:0.243486604769;SOX17:0.223475122254;FOXQ1:0.22231907221;CUX2:0.201473563137;MTF1:0.181020021609;MAZ:0.171071012022;RFX2..5_RFXANK_RFXAP:0.160019474235;GCM1,2:0.15805815513;NR5A1,2:0.12858520197;EGR1..3:0.127811727443;GATA4:0.118913751012;FOXD3:0.0850749244432;CEBPA,B_DDIT3:0.0617838440592;FOXM1:0.0530943125811;HIF1A:0.0419558134307;HAND1,2:0.0223494329422;PBX1:0.0108093764381;ONECUT1,2:0.00259301443631;MZF1:-0.0233492556158;ZIC1..3:-0.0393152125665;TLX2:-0.0668279139772;FOSL2:-0.0842480216843;HOXA9_MEIS1:-0.109820863818;NKX3-2:-0.132304905823;SOX5:-0.149120817294;MEF2{A,B,C,D}:-0.15822594023;SMAD1..7,9:-0.186054189956;LHX3,4:-0.192662106494;LEF1_TCF7_TCF7L1,2:-0.208711740858;TP53:-0.215884756706;SPIB:-0.227582210669;TBP:-0.230849446799;POU5F1:-0.231123525908;HOX{A4,D4}:-0.23282143267;PDX1:-0.243339363129;PAX1,9:-0.247176372981;CDC5L:-0.248058333523;TOPORS:-0.284608890443;RORA:-0.294737990012;POU2F1..3:-0.296225796253;XBP1:-0.311465986058;FOXL1:-0.315277473811;ELF1,2,4:-0.321841621901;ETS1,2:-0.337343526739;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.339223375339;GTF2I:-0.345118905847;RXR{A,B,G}:-0.345818853306;TEF:-0.362490384393;BPTF:-0.378090327242;TLX1..3_NFIC{dimer}:-0.391975021594;GATA6:-0.393210275926;RBPJ:-0.395808461135;POU1F1:-0.430529074617;GFI1B:-0.432540783128;RXRA_VDR{dimer}:-0.465439561714;EVI1:-0.46657380216;CREB1:-0.47105833429;PAX2:-0.480190407153;NFKB1_REL_RELA:-0.507296901815;HNF1A:-0.510864671402;ZBTB16:-0.51854643049;EN1,2:-0.518723545447;SPI1:-0.527840924049;HLF:-0.536568346866;NFE2:-0.553994157553;FOS_FOS{B,L1}_JUN{B,D}:-0.573378687341;GZF1:-0.574940759794;BACH2:-0.601958711978;ZNF384:-0.623610739591;HNF4A_NR2F1,2:-0.636490954881;UFEwm:-0.653687446736;ZNF148:-0.691749678302;TFAP2{A,C}:-0.707186829109;NFIX:-0.734060958061;HES1:-0.755542801315;KLF4:-0.784045506359;NR3C1:-0.784503860455;OCT4_SOX2{dimer}:-0.786487326989;NR6A1:-0.787843147643;TBX4,5:-0.796130186964;POU3F1..4:-0.800762946528;PRDM1:-0.837718898688;HBP1_HMGB_SSRP1_UBTF:-0.843571599423;MYBL2:-0.84920869043;AR:-0.892170513046;RUNX1..3:-0.892933176046;NFIL3:-0.901754582287;TEAD1:-0.919726294366;HMGA1,2:-0.92658958717;TFCP2:-0.96204477261;HOX{A5,B5}:-0.969087738396;CDX1,2,4:-0.996321589507;DMAP1_NCOR{1,2}_SMARC:-1.02604283187;GTF2A1,2:-1.04284072236;STAT1,3:-1.04288581378;NR1H4:-1.06749551089;NKX2-2,8:-1.08401801023;SRF:-1.09242688703;MAFB:-1.13201092537;STAT2,4,6:-1.18301729379;NANOG{mouse}:-1.2018856081;NFE2L2:-1.2271473228;TFAP4:-1.24239765422;TAL1_TCF{3,4,12}:-1.44959615191;AIRE:-1.49667136347;IKZF1:-1.54460714905;STAT5{A,B}:-1.64423712345;HMX1:-1.66656272376;ESR1:-1.7104466353;EBF1:-1.72363365105;PAX4:-1.73293258768;NFATC1..3:-1.73622655958;ALX4:-1.73639206751;ZNF238:-1.76659273665;GLI1..3:-1.79505530087;NFE2L1:-1.89187486597;CRX:-1.99498747778;HSF1,2:-2.46364546285;SPZ1:-2.46389508398
|top_motifs=LMO2:2.82472247705;ZEB1:2.35060199783;MYOD1:2.30426764938;SNAI1..3:2.1993680861;DBP:2.12425723061;GFI1:2.08817657097;NFY{A,B,C}:2.0816043083;PAX3,7:1.97520520582;TFDP1:1.97475951492;ARID5B:1.86658156655;BREu{core}:1.83458702096;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.74704520013;FOXA2:1.53736731038;XCPE1{core}:1.48578974696;ALX1:1.45801292024;bHLH_family:1.42194858657;E2F1..5:1.36983989966;ATF2:1.32773628972;NKX2-3_NKX2-5:1.27367447421;NRF1:1.26891193913;SP1:1.2508736051;JUN:1.24691675294;SOX{8,9,10}:1.22410416627;ZFP161:1.19338191546;VSX1,2:1.18088730283;FOX{I1,J2}:1.12918631722;ZNF143:1.11298470812;ADNP_IRX_SIX_ZHX:0.893030920107;SREBF1,2:0.891362441978;AHR_ARNT_ARNT2:0.886400461325;PPARG:0.884071194796;FOX{D1,D2}:0.869099313592;ELK1,4_GABP{A,B1}:0.838692996771;FOX{F1,F2,J1}:0.786385572957;RFX1:0.780275038343;HOX{A6,A7,B6,B7}:0.745525871279;FOXO1,3,4:0.712707039673;TFAP2B:0.707730716561;ATF6:0.704770874977;PAX5:0.688932894415;YY1:0.688622806365;ATF5_CREB3:0.649572715498;NKX3-1:0.617377603707;MED-1{core}:0.614693406071;MTE{core}:0.590550293364;IKZF2:0.580959629736;ATF4:0.577087357641;SOX2:0.57017167703;NHLH1,2:0.567543754659;HIC1:0.566894650076;PRRX1,2:0.530981020976;FOXP1:0.528748914365;NKX6-1,2:0.518121505474;PITX1..3:0.502749875486;ZBTB6:0.492869538957;IRF1,2:0.454901602791;EP300:0.44388952236;ZNF423:0.441766516649;PATZ1:0.439790819901;MYB:0.431154454397;T:0.413626767151;PAX6:0.385099612707;IRF7:0.377180377071;NANOG:0.370645836126;FOXP3:0.336660737369;NKX2-1,4:0.325460024535;FOXN1:0.320252118862;RREB1:0.311533776639;POU6F1:0.299436894121;MYFfamily:0.282217981016;REST:0.276399752224;PAX8:0.266726797849;TGIF1:0.257746286295;ESRRA:0.243486604769;SOX17:0.223475122254;FOXQ1:0.22231907221;CUX2:0.201473563137;MTF1:0.181020021609;MAZ:0.171071012022;RFX2..5_RFXANK_RFXAP:0.160019474235;GCM1,2:0.15805815513;NR5A1,2:0.12858520197;EGR1..3:0.127811727443;GATA4:0.118913751012;FOXD3:0.0850749244432;CEBPA,B_DDIT3:0.0617838440592;FOXM1:0.0530943125811;HIF1A:0.0419558134307;HAND1,2:0.0223494329422;PBX1:0.0108093764381;ONECUT1,2:0.00259301443631;MZF1:-0.0233492556158;ZIC1..3:-0.0393152125665;TLX2:-0.0668279139772;FOSL2:-0.0842480216843;HOXA9_MEIS1:-0.109820863818;NKX3-2:-0.132304905823;SOX5:-0.149120817294;MEF2{A,B,C,D}:-0.15822594023;SMAD1..7,9:-0.186054189956;LHX3,4:-0.192662106494;LEF1_TCF7_TCF7L1,2:-0.208711740858;TP53:-0.215884756706;SPIB:-0.227582210669;TBP:-0.230849446799;POU5F1:-0.231123525908;HOX{A4,D4}:-0.23282143267;PDX1:-0.243339363129;PAX1,9:-0.247176372981;CDC5L:-0.248058333523;TOPORS:-0.284608890443;RORA:-0.294737990012;POU2F1..3:-0.296225796253;XBP1:-0.311465986058;FOXL1:-0.315277473811;ELF1,2,4:-0.321841621901;ETS1,2:-0.337343526739;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.339223375339;GTF2I:-0.345118905847;RXR{A,B,G}:-0.345818853306;TEF:-0.362490384393;BPTF:-0.378090327242;TLX1..3_NFIC{dimer}:-0.391975021594;GATA6:-0.393210275926;RBPJ:-0.395808461135;POU1F1:-0.430529074617;GFI1B:-0.432540783128;RXRA_VDR{dimer}:-0.465439561714;EVI1:-0.46657380216;CREB1:-0.47105833429;PAX2:-0.480190407153;NFKB1_REL_RELA:-0.507296901815;HNF1A:-0.510864671402;ZBTB16:-0.51854643049;EN1,2:-0.518723545447;SPI1:-0.527840924049;HLF:-0.536568346866;NFE2:-0.553994157553;FOS_FOS{B,L1}_JUN{B,D}:-0.573378687341;GZF1:-0.574940759794;BACH2:-0.601958711978;ZNF384:-0.623610739591;HNF4A_NR2F1,2:-0.636490954881;UFEwm:-0.653687446736;ZNF148:-0.691749678302;TFAP2{A,C}:-0.707186829109;NFIX:-0.734060958061;HES1:-0.755542801315;KLF4:-0.784045506359;NR3C1:-0.784503860455;OCT4_SOX2{dimer}:-0.786487326989;NR6A1:-0.787843147643;TBX4,5:-0.796130186964;POU3F1..4:-0.800762946528;PRDM1:-0.837718898688;HBP1_HMGB_SSRP1_UBTF:-0.843571599423;MYBL2:-0.84920869043;AR:-0.892170513046;RUNX1..3:-0.892933176046;NFIL3:-0.901754582287;TEAD1:-0.919726294366;HMGA1,2:-0.92658958717;TFCP2:-0.96204477261;HOX{A5,B5}:-0.969087738396;CDX1,2,4:-0.996321589507;DMAP1_NCOR{1,2}_SMARC:-1.02604283187;GTF2A1,2:-1.04284072236;STAT1,3:-1.04288581378;NR1H4:-1.06749551089;NKX2-2,8:-1.08401801023;SRF:-1.09242688703;MAFB:-1.13201092537;STAT2,4,6:-1.18301729379;NANOG{mouse}:-1.2018856081;NFE2L2:-1.2271473228;TFAP4:-1.24239765422;TAL1_TCF{3,4,12}:-1.44959615191;AIRE:-1.49667136347;IKZF1:-1.54460714905;STAT5{A,B}:-1.64423712345;HMX1:-1.66656272376;ESR1:-1.7104466353;EBF1:-1.72363365105;PAX4:-1.73293258768;NFATC1..3:-1.73622655958;ALX4:-1.73639206751;ZNF238:-1.76659273665;GLI1..3:-1.79505530087;NFE2L1:-1.89187486597;CRX:-1.99498747778;HSF1,2:-2.46364546285;SPZ1:-2.46389508398
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10562-108A4;search_select_hide=table117:FF:10562-108A4
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:small cell lung carcinoma cell line:WA-hT
Species:Human (Homo sapiens)
Library ID:CNhs11812
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age56
cell typeunclassifiable
cell lineWA-hT
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005240
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11812 CAGE DRX008009 DRR008881
Accession ID Hg19

Library idBAMCTSS
CNhs11812 DRZ000306 DRZ001691
Accession ID Hg38

Library idBAMCTSS
CNhs11812 DRZ011656 DRZ013041
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.334
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.441
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0611
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0753
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.218
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0.0611
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.209
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.214
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0611
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0235
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.272
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0.0611
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0114
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0624
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0611
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0168
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.532
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.115
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0.0305
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0.162
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0.932
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11812

Jaspar motifP-value
MA0002.29.86675e-6
MA0003.10.416
MA0004.10.15
MA0006.10.586
MA0007.10.49
MA0009.10.626
MA0014.10.692
MA0017.10.0171
MA0018.20.00215
MA0019.10.816
MA0024.19.9188e-5
MA0025.10.00823
MA0027.10.902
MA0028.10.194
MA0029.10.413
MA0030.10.00918
MA0031.10.0442
MA0035.20.958
MA0038.12.10758e-4
MA0039.20.156
MA0040.10.654
MA0041.10.23
MA0042.10.166
MA0043.10.0126
MA0046.10.651
MA0047.20.0123
MA0048.10.156
MA0050.10.00788
MA0051.10.00313
MA0052.10.678
MA0055.10.617
MA0057.10.459
MA0058.10.127
MA0059.10.824
MA0060.14.4212e-20
MA0061.10.00742
MA0062.20.0322
MA0065.20.0104
MA0066.10.0312
MA0067.10.757
MA0068.10.191
MA0069.10.862
MA0070.10.0324
MA0071.10.265
MA0072.10.454
MA0073.10.712
MA0074.10.132
MA0076.10.0224
MA0077.10.0476
MA0078.10.784
MA0079.20.271
MA0080.20.00513
MA0081.10.0944
MA0083.10.108
MA0084.10.743
MA0087.10.573
MA0088.10.285
MA0090.10.00219
MA0091.10.0485
MA0092.10.0593
MA0093.10.0984
MA0099.21.4302e-8
MA0100.10.23
MA0101.10.0329
MA0102.20.4
MA0103.16.15433e-4
MA0104.20.35
MA0105.12.31496e-5
MA0106.10.141
MA0107.10.0195
MA0108.20.0328
MA0111.10.464
MA0112.25.81755e-5
MA0113.10.0485
MA0114.10.0581
MA0115.10.477
MA0116.11.78299e-4
MA0117.10.666
MA0119.10.0584
MA0122.10.332
MA0124.10.774
MA0125.10.0338
MA0131.10.346
MA0135.10.915
MA0136.10.843
MA0137.20.0843
MA0138.20.957
MA0139.10.301
MA0140.10.345
MA0141.10.042
MA0142.10.224
MA0143.10.156
MA0144.10.286
MA0145.10.229
MA0146.10.32
MA0147.10.729
MA0148.10.0102
MA0149.10.126
MA0150.18.58789e-4
MA0152.10.933
MA0153.10.0925
MA0154.16.0733e-4
MA0155.10.528
MA0156.10.44
MA0157.10.248
MA0159.10.364
MA0160.10.164
MA0162.10.196
MA0163.14.60268e-8
MA0164.10.35
MA0258.10.00361
MA0259.10.543



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11812

Novel motifP-value
10.143
100.13
1000.834
1010.492
1020.254
1030.0342
1040.343
1050.498
1060.00445
1070.0592
1080.632
1090.14
110.0873
1100.23
1110.0138
1120.0919
1130.408
1147.46577e-4
1150.912
1160.163
1170.122
1180.178
1190.164
120.508
1200.24
1210.6
1220.329
1230.243
1240.859
1250.853
1260.452
1270.356
1280.0478
1290.569
130.261
1300.73
1310.795
1320.997
1330.373
1340.979
1350.00607
1360.324
1370.0222
1380.845
1390.122
140.813
1400.0165
1410.77
1420.687
1430.376
1440.0287
1450.121
1460.321
1470.721
1480.024
1490.0747
150.113
1500.46
1510.383
1520.0781
1530.374
1540.88
1550.798
1560.272
1570.676
1580.763
1590.0372
160.133
1600.0783
1610.329
1620.776
1630.854
1640.0458
1650.0679
1660.332
1670.652
1680.0871
1690.0137
170.25
180.28
190.182
20.76
200.945
210.166
220.174
230.02
240.141
250.719
260.0583
270.877
280.93
290.289
30.0302
300.865
310.494
327.34074e-4
330.701
340.483
350.126
360.0758
370.0571
380.379
390.0684
40.627
400.407
410.164
420.122
430.0903
440.493
450.552
460.0644
470.243
480.156
490.138
50.232
500.455
510.219
520.154
530.567
540.233
550.0474
560.564
570.286
580.146
590.0413
60.49
600.0461
610.685
620.0436
630.121
640.555
650.172
660.0945
670.543
680.94
690.874
70.462
700.0657
710.0678
720.434
730.0884
740.0484
750.184
760.651
770.0894
780.355
790.0324
80.0717
800.077
810.0897
820.0193
830.707
840.714
850.00313
860.176
870.872
880.427
890.0998
90.139
900.0365
910.162
920.0476
930.883
940.145
950.258
960.135
970.351
980.708
990.607



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11812


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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