FFCP PHASE1:Hg19::chr11:31839488..31839515,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:31839488..31839515,- to FFCP PHASE1:Hg19::chr11:31839488..31839515,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5080 | |EntrezGene=5080 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |HGNC=8620 | ||
|TSSclassifier=strong | |||
|UniProt=P26367,B1B1I9,Q66SS1 | |UniProt=P26367,B1B1I9,Q66SS1 | ||
|association_with_transcript=0bp_to_ENST00000379129,ENST00000379132,ENST00000419022,ENST00000423822,ENST00000532175,NM_001127612,uc009yjr.2_5end | |||
|cluster_id=chr11:31839488..31839515,- | |||
|coexpression_cluster_id=C3140 | |||
|description=CAGE_peak_3_at_PAX6_5end | |||
|id=chr11:31839488..31839515,- | |||
|ontology_enrichment_celltype=CL:0000128!2.30e-11!7;CL:0000126!2.30e-11!7;CL:0000127!2.30e-11!7;CL:0002453!2.30e-11!7;CL:0002319!2.39e-09!25;CL:0000133!1.33e-08!59;CL:0000306!4.05e-08!4;CL:0002222!4.05e-08!4;CL:0002224!4.05e-08!4;CL:0000221!5.41e-08!71;CL:0000064!4.56e-07!3;CL:0005012!4.56e-07!3;CL:0000067!4.56e-07!3;CL:0002304!4.56e-07!3;CL:0002605!7.04e-07!3;CL:0000075!9.20e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000306;4.92e-10;4!CL:0002222;4.92e-10;4!CL:0002224;4.92e-10;4!CL:0000064;1.16e-08;3!CL:0000067;1.16e-08;3!CL:0005012;1.16e-08;3!CL:0002304;1.16e-08;3!CL:0002605;2.07e-08;3!CL:0000128;4.50e-08;7!CL:0000126;4.50e-08;7!CL:0000127;4.50e-08;7!CL:0002319;5.49e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,5.15e-10,4;CL:0002222,5.15e-10,4;CL:0002224,5.15e-10,4;CL:0000064,1.16e-08,3;CL:0000067,1.16e-08,3;CL:0005012,1.16e-08,3;CL:0002304,1.16e-08,3;CL:0002605,2.02e-08,3;CL:0000128,4.57e-08,7;CL:0000126,4.57e-08,7;CL:0000127,4.57e-08,7;CL:0002453,4.57e-08,7;CL:0002319,5.45e-08,25;CL:0000133,1.99e-07,59;CL:0000047,2.28e-07,8;CL:0000221,3.60e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.66e-15;82!UBERON:0006215;3.80e-08;3!UBERON:0006241;4.86e-08;3!UBERON:0003057;4.86e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!5.07e-93!86;UBERON:0007284!5.07e-93!86;UBERON:0002346!6.43e-88!90;UBERON:0005743!3.97e-87!86;UBERON:0001049!7.76e-86!57;UBERON:0005068!7.76e-86!57;UBERON:0006241!7.76e-86!57;UBERON:0007135!7.76e-86!57;UBERON:0001017!2.37e-81!82;UBERON:0003056!1.17e-77!61;UBERON:0000073!6.07e-77!94;UBERON:0001016!6.07e-77!94;UBERON:0002616!2.88e-72!59;UBERON:0000955!9.57e-69!69;UBERON:0006238!9.57e-69!69;UBERON:0002780!4.70e-64!41;UBERON:0001890!4.70e-64!41;UBERON:0006240!4.70e-64!41;UBERON:0003080!3.14e-62!42;UBERON:0000033!1.37e-57!123;UBERON:0000153!1.55e-55!129;UBERON:0007811!1.55e-55!129;UBERON:0004121!5.95e-54!169;UBERON:0001893!1.11e-53!34;UBERON:0002020!1.23e-53!34;UBERON:0003528!1.23e-53!34;UBERON:0002791!2.40e-52!33;UBERON:0000924!3.70e-52!173;UBERON:0006601!3.70e-52!173;UBERON:0001869!1.24e-50!32;UBERON:0000956!2.43e-40!25;UBERON:0000203!2.43e-40!25;UBERON:0007023!8.36e-36!115;UBERON:0002619!4.84e-35!22;UBERON:0001950!7.60e-32!20;UBERON:0003076!1.75e-23!15;UBERON:0003057!1.75e-23!15;UBERON:0000064!9.98e-21!219;UBERON:0007625!1.23e-18!11;UBERON:0004733!1.50e-18!12;UBERON:0002028!1.50e-18!12;UBERON:0007277!1.50e-18!12;UBERON:0000970!4.16e-18!20;UBERON:0000483!3.94e-17!309;UBERON:0002104!5.04e-17!21;UBERON:0004732!7.18e-17!13;UBERON:0000119!9.38e-17!312;UBERON:0000019!1.78e-16!19;UBERON:0000047!1.78e-16!19;UBERON:0004088!1.78e-16!19;UBERON:0003072!1.78e-16!19;UBERON:0003071!1.78e-16!19;UBERON:0004128!1.78e-16!19;UBERON:0000025!2.51e-16!194;UBERON:0000020!3.81e-15!23;UBERON:0002420!1.10e-14!9;UBERON:0007245!1.10e-14!9;UBERON:0010009!1.10e-14!9;UBERON:0010011!1.10e-14!9;UBERON:0000454!1.10e-14!9;UBERON:0001456!1.65e-14!21;UBERON:0002308!1.84e-14!9;UBERON:0000125!1.84e-14!9;UBERON:0001032!2.52e-14!24;UBERON:0004456!2.52e-14!24;UBERON:0002680!3.93e-14!9;UBERON:0001895!3.93e-14!9;UBERON:0010092!3.93e-14!9;UBERON:0001871!1.12e-13!7;UBERON:0000475!2.13e-13!365;UBERON:0001801!1.28e-12!14;UBERON:0009663!1.17e-11!7;UBERON:0001894!1.80e-11!7;UBERON:0006222!1.80e-11!7;UBERON:0005085!8.50e-11!29;UBERON:0000481!1.22e-10!347;UBERON:0000062!3.01e-10!511;UBERON:0000200!3.20e-10!6;UBERON:0002037!3.36e-10!6;UBERON:0006215!3.36e-10!6;UBERON:0004111!4.85e-10!241;UBERON:0000477!8.51e-10!286;UBERON:0002298!9.05e-10!8;UBERON:0000349!3.53e-09!5;UBERON:0000922!5.54e-09!612;UBERON:0000488!7.48e-09!4;UBERON:0000063!9.34e-09!97;UBERON:0002021!1.21e-08!5;UBERON:0001872!1.25e-08!5;UBERON:0010077!4.05e-08!4;UBERON:0005389!4.05e-08!4;UBERON:0000484!4.05e-08!4;UBERON:0002546!4.05e-08!4;UBERON:0000965!4.05e-08!4;UBERON:0001803!4.05e-08!4;UBERON:0003073!4.05e-08!4;UBERON:0005426!4.05e-08!4;UBERON:0003296!2.38e-07!4;UBERON:0010133!2.38e-07!4;UBERON:0000369!2.42e-07!4;UBERON:0002435!2.42e-07!4;UBERON:0000204!2.42e-07!4;UBERON:0010082!2.42e-07!4;UBERON:0000468!3.05e-07!659;UBERON:0001778!4.56e-07!3;UBERON:0001775!4.56e-07!3;UBERON:0000923!4.75e-07!604;UBERON:0005291!4.75e-07!604;UBERON:0006598!4.75e-07!604;UBERON:0002532!4.75e-07!604;UBERON:0002050!5.37e-07!605;UBERON:0005423!5.37e-07!605;UBERON:0000467!7.31e-07!625;UBERON:0000480!8.25e-07!626 | |||
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| ||
|short_description=p3@PAX6 | |||
}} | }} |
Latest revision as of 15:06, 17 September 2015
Short description: | p3@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PAX6_5end |
Coexpression cluster: | C3140_argyrophil_Lens_Ciliary_eye_small_Astrocyte_Iris |
Association with transcript: | 0bp_to_ENST00000379129, ENST00000379132, ENST00000419022, ENST00000423822, ENST00000532175, NM_001127612, uc009yjr.2_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | P26367B1B1I9Q66SS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 5.15e-10 | 4 |
vertebrate lens cell | 5.15e-10 | 4 |
lens epithelial cell | 5.15e-10 | 4 |
ciliated cell | 1.16e-08 | 3 |
ciliated epithelial cell | 1.16e-08 | 3 |
multi-ciliated epithelial cell | 1.16e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.16e-08 | 3 |
astrocyte of the cerebral cortex | 2.02e-08 | 3 |
oligodendrocyte | 4.57e-08 | 7 |
macroglial cell | 4.57e-08 | 7 |
astrocyte | 4.57e-08 | 7 |
oligodendrocyte precursor cell | 4.57e-08 | 7 |
neural cell | 5.45e-08 | 25 |
neurectodermal cell | 1.99e-07 | 59 |
neuronal stem cell | 2.28e-07 | 8 |
ectodermal cell | 3.60e-07 | 72 |