FF:10841-111E4: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	small cell lung carcinoma cell line:DMS 144
Species:	Human (Homo sapiens)
Library ID:	CNhs12808
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	68
cell type	unclassifiable
cell line	DMS 144
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005205

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12808		CAGE		DRX008006		DRR008878

Accession ID Hg19

Library id		BAM		CTSS
CNhs12808		DRZ000303		DRZ001688

Accession ID Hg38

Library id		BAM		CTSS
CNhs12808		DRZ011653		DRZ013038

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005205

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10090		RNA-Seq		DRX057147		DRR062906

Accession ID Hg19

Library id		BAM		CTSS
RDhi10090		DRZ007982

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.054
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.353
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00168
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0026
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0.838
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00225
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0915
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0471
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0927
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.31
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0469
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.203
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12808

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00314
MA0003.1	MA0003.1	0.189
MA0004.1	MA0004.1	0.206
MA0006.1	MA0006.1	0.229
MA0007.1	MA0007.1	0.856
MA0009.1	MA0009.1	0.841
MA0014.1	MA0014.1	0.748
MA0017.1	MA0017.1	0.00299
MA0018.2	MA0018.2	0.128
MA0019.1	MA0019.1	0.651
MA0024.1	MA0024.1	3.09751e-4
MA0025.1	MA0025.1	0.237
MA0027.1	MA0027.1	0.578
MA0028.1	MA0028.1	0.00968
MA0029.1	MA0029.1	0.463
MA0030.1	MA0030.1	0.192
MA0031.1	MA0031.1	0.162
MA0035.2	MA0035.2	0.602
MA0038.1	MA0038.1	0.00261
MA0039.2	MA0039.2	0.433
MA0040.1	MA0040.1	0.4
MA0041.1	MA0041.1	0.0943
MA0042.1	MA0042.1	0.0815
MA0043.1	MA0043.1	0.696
MA0046.1	MA0046.1	0.129
MA0047.2	MA0047.2	0.0982
MA0048.1	MA0048.1	0.175
MA0050.1	MA0050.1	3.14561e-12
MA0051.1	MA0051.1	6.66465e-7
MA0052.1	MA0052.1	0.0468
MA0055.1	MA0055.1	0.0101
MA0057.1	MA0057.1	0.0931
MA0058.1	MA0058.1	0.169
MA0059.1	MA0059.1	0.504
MA0060.1	MA0060.1	4.54166e-14
MA0061.1	MA0061.1	0.0227
MA0062.2	MA0062.2	0.00819
MA0065.2	MA0065.2	0.117
MA0066.1	MA0066.1	0.238
MA0067.1	MA0067.1	0.311
MA0068.1	MA0068.1	0.523
MA0069.1	MA0069.1	0.609
MA0070.1	MA0070.1	0.0193
MA0071.1	MA0071.1	0.915
MA0072.1	MA0072.1	0.953
MA0073.1	MA0073.1	0.43
MA0074.1	MA0074.1	0.247
MA0076.1	MA0076.1	1.39887e-4
MA0077.1	MA0077.1	0.48
MA0078.1	MA0078.1	0.483
MA0079.2	MA0079.2	0.254
MA0080.2	MA0080.2	3.52572e-13
MA0081.1	MA0081.1	0.0344
MA0083.1	MA0083.1	0.479
MA0084.1	MA0084.1	0.978
MA0087.1	MA0087.1	0.734
MA0088.1	MA0088.1	0.0273
MA0090.1	MA0090.1	0.257
MA0091.1	MA0091.1	0.0432
MA0092.1	MA0092.1	0.261
MA0093.1	MA0093.1	0.134
MA0099.2	MA0099.2	2.52898e-21
MA0100.1	MA0100.1	0.1
MA0101.1	MA0101.1	0.0608
MA0102.2	MA0102.2	4.88478e-5
MA0103.1	MA0103.1	0.459
MA0104.2	MA0104.2	0.073
MA0105.1	MA0105.1	0.0518
MA0106.1	MA0106.1	0.515
MA0107.1	MA0107.1	0.0162
MA0108.2	MA0108.2	0.34
MA0111.1	MA0111.1	0.862
MA0112.2	MA0112.2	0.00122
MA0113.1	MA0113.1	0.0234
MA0114.1	MA0114.1	0.12
MA0115.1	MA0115.1	0.904
MA0116.1	MA0116.1	0.0892
MA0117.1	MA0117.1	0.855
MA0119.1	MA0119.1	0.31
MA0122.1	MA0122.1	0.531
MA0124.1	MA0124.1	0.946
MA0125.1	MA0125.1	0.187
MA0131.1	MA0131.1	0.143
MA0135.1	MA0135.1	0.181
MA0136.1	MA0136.1	2.28982e-10
MA0137.2	MA0137.2	0.0308
MA0138.2	MA0138.2	0.476
MA0139.1	MA0139.1	0.159
MA0140.1	MA0140.1	0.964
MA0141.1	MA0141.1	0.279
MA0142.1	MA0142.1	0.973
MA0143.1	MA0143.1	0.75
MA0144.1	MA0144.1	5.80317e-4
MA0145.1	MA0145.1	0.109
MA0146.1	MA0146.1	0.379
MA0147.1	MA0147.1	0.082
MA0148.1	MA0148.1	0.068
MA0149.1	MA0149.1	0.909
MA0150.1	MA0150.1	3.39755e-5
MA0152.1	MA0152.1	0.787
MA0153.1	MA0153.1	0.0978
MA0154.1	MA0154.1	0.0256
MA0155.1	MA0155.1	0.296
MA0156.1	MA0156.1	0.00131
MA0157.1	MA0157.1	0.397
MA0159.1	MA0159.1	0.0552
MA0160.1	MA0160.1	0.278
MA0162.1	MA0162.1	0.224
MA0163.1	MA0163.1	0.0861
MA0164.1	MA0164.1	0.666
MA0258.1	MA0258.1	0.0172
MA0259.1	MA0259.1	0.0472

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12808

Novel motif	Logo	P-value
1	1	0.827
10	10	0.888
100	100	0.322
101	101	0.848
102	102	0.472
103	103	0.231
104	104	0.577
105	105	0.279
106	106	6.70058e-7
107	107	0.00169
108	108	0.57
109	109	0.57
11	11	0.481
110	110	0.797
111	111	0.784
112	112	0.0396
113	113	0.468
114	114	0.364
115	115	0.685
116	116	0.856
117	117	0.941
118	118	0.994
119	119	0.363
12	12	0.728
120	120	0.554
121	121	0.23
122	122	0.641
123	123	0.635
124	124	0.629
125	125	0.00667
126	126	0.137
127	127	0.65
128	128	0.00205
129	129	0.3
13	13	0.929
130	130	0.514
131	131	0.0185
132	132	0.248
133	133	0.14
134	134	0.953
135	135	0.0152
136	136	0.457
137	137	0.182
138	138	0.209
139	139	0.0465
14	14	0.55
140	140	0.903
141	141	0.571
142	142	0.506
143	143	0.21
144	144	0.688
145	145	0.549
146	146	0.265
147	147	0.553
148	148	0.0157
149	149	0.109
15	15	0.559
150	150	0.256
151	151	0.258
152	152	0.0118
153	153	0.237
154	154	0.672
155	155	0.532
156	156	0.976
157	157	0.959
158	158	0.535
159	159	0.265
16	16	0.308
160	160	0.442
161	161	0.792
162	162	0.318
163	163	0.31
164	164	0.909
165	165	0.231
166	166	0.262
167	167	0.176
168	168	0.0996
169	169	0.0335
17	17	0.155
18	18	0.338
19	19	0.157
2	2	0.0485
20	20	0.417
21	21	0.575
22	22	0.229
23	23	1.25933e-4
24	24	0.918
25	25	0.689
26	26	0.321
27	27	0.161
28	28	0.756
29	29	0.377
3	3	0.462
30	30	0.188
31	31	0.722
32	32	0.0481
33	33	0.969
34	34	0.278
35	35	0.942
36	36	0.583
37	37	0.331
38	38	0.323
39	39	0.195
4	4	0.285
40	40	0.747
41	41	0.129
42	42	0.82
43	43	0.335
44	44	0.661
45	45	0.179
46	46	0.337
47	47	0.802
48	48	0.644
49	49	0.504
5	5	0.219
50	50	0.598
51	51	0.82
52	52	0.0127
53	53	0.319
54	54	0.359
55	55	0.814
56	56	0.47
57	57	0.911
58	58	0.256
59	59	0.0393
6	6	0.669
60	60	0.0026
61	61	0.925
62	62	0.136
63	63	0.317
64	64	0.753
65	65	0.0419
66	66	0.0363
67	67	0.426
68	68	0.098
69	69	0.768
7	7	0.72
70	70	0.207
71	71	0.206
72	72	0.218
73	73	0.0938
74	74	0.528
75	75	0.702
76	76	0.629
77	77	0.114
78	78	0.221
79	79	0.135
8	8	0.79
80	80	0.014
81	81	0.696
82	82	0.404
83	83	0.386
84	84	0.956
85	85	0.00824
86	86	0.534
87	87	0.948
88	88	0.956
89	89	0.0314
9	9	0.116
90	90	0.805
91	91	0.0783
92	92	0.208
93	93	0.935
94	94	0.18
95	95	0.405
96	96	0.459
97	97	0.898
98	98	0.687
99	99	0.72

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12808

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100189 small cell lung cancer cell sample
FF:0102206 small cell lung cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007026,UBERON:0008947,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005205
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005205
-|ancestors_in_disease_facet=DOID:0050615,DOID:0050686,DOID:0050687,DOID:1324,DOID:1325,DOID:14566,DOID:162,DOID:305,DOID:3904,DOID:4,DOID:7
+|accession_numbers=CAGE;DRX008006;DRR008878;DRZ000303;DRZ001688;DRZ011653;DRZ013038
+|accession_numbers_RNASeq=RNA-Seq;DRX057147;DRR062906;DRZ007982
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
+|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:5409,DOID:3904
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102206,FF:0100189
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120
@@ Line 34: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aDMS%2520144.CNhs12808.10841-111E4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10841-111E4
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100189;;FF:0102206
+|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0102206
+|is_obsolete=
+|library_id=CNhs12808
+|library_id_phase_based=2:CNhs12808
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10841
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10841
 |name=small cell lung carcinoma cell line:DMS 144
 |namespace=FANTOM5
@@ Line 41: / Line 62: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12808,LSID972,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=111
 |rna_catalog_number=
@@ Line 53: / Line 77: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=111E4
+|rna_tube_id=1.11E+06
 |rna_weight_ug=15.9024
+|rnaseq_library_id=RDhi10090
 |sample_age=68
+|sample_category=cell lines
 |sample_cell_catalog=CRL2066
 |sample_cell_line=DMS 144
@@ Line 68: / Line 94: @@
 |sample_ethnicity=C
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.16349050542657e-317!GO:0043231;intracellular membrane-bound organelle;1.53436926948582e-283!GO:0043227;membrane-bound organelle;3.30686936642355e-283!GO:0043226;organelle;2.85917609991675e-278!GO:0043229;intracellular organelle;1.18803499049965e-277!GO:0044422;organelle part;4.34698536523283e-170!GO:0044446;intracellular organelle part;1.29307487227769e-168!GO:0005737;cytoplasm;2.27914746546876e-160!GO:0005634;nucleus;5.89124258969341e-155!GO:0043170;macromolecule metabolic process;1.53091425916425e-118!GO:0044444;cytoplasmic part;2.83874442994363e-118!GO:0044238;primary metabolic process;1.48901092945033e-117!GO:0032991;macromolecular complex;4.16371922240973e-117!GO:0044237;cellular metabolic process;1.56401468657018e-116!GO:0030529;ribonucleoprotein complex;3.30805685818036e-104!GO:0044428;nuclear part;4.23295127333589e-101!GO:0003723;RNA binding;4.2259185231674e-91!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.09420011034593e-90!GO:0043283;biopolymer metabolic process;8.00155521411267e-90!GO:0043233;organelle lumen;8.91439350338142e-90!GO:0031974;membrane-enclosed lumen;8.91439350338142e-90!GO:0010467;gene expression;1.47283206875107e-88!GO:0005739;mitochondrion;8.09038407448013e-71!GO:0003676;nucleic acid binding;2.36222144314525e-69!GO:0006396;RNA processing;6.61435761836815e-67!GO:0031981;nuclear lumen;1.4554707305056e-59!GO:0005840;ribosome;1.91641793269624e-58!GO:0043234;protein complex;2.15177928543824e-57!GO:0016070;RNA metabolic process;1.4180147654003e-55!GO:0005515;protein binding;1.84842335091136e-54!GO:0016043;cellular component organization and biogenesis;5.1699406396241e-52!GO:0016071;mRNA metabolic process;2.59309180607331e-51!GO:0003735;structural constituent of ribosome;1.31461630315501e-50!GO:0006412;translation;3.52445184535289e-50!GO:0008380;RNA splicing;3.98094714939945e-49!GO:0044429;mitochondrial part;3.10785668878614e-48!GO:0006259;DNA metabolic process;5.3275933818992e-46!GO:0031090;organelle membrane;5.95637013653161e-46!GO:0033036;macromolecule localization;1.28704257493252e-45!GO:0015031;protein transport;1.38400179408488e-45!GO:0006397;mRNA processing;6.55024719025048e-45!GO:0031967;organelle envelope;8.26836800893425e-45!GO:0031975;envelope;1.19467635193835e-44!GO:0033279;ribosomal subunit;4.09329393521542e-44!GO:0006996;organelle organization and biogenesis;1.08439010820301e-43!GO:0008104;protein localization;8.50650434884264e-41!GO:0043228;non-membrane-bound organelle;3.0750828057755e-40!GO:0043232;intracellular non-membrane-bound organelle;3.0750828057755e-40!GO:0045184;establishment of protein localization;3.07953007731579e-40!GO:0046907;intracellular transport;6.15855648017939e-38!GO:0019538;protein metabolic process;3.31254325759408e-37!GO:0005654;nucleoplasm;1.20437755662744e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.30153978328184e-36!GO:0005829;cytosol;3.58290443038279e-35!GO:0005681;spliceosome;5.55426644717723e-35!GO:0065003;macromolecular complex assembly;4.03071427599121e-34!GO:0044260;cellular macromolecule metabolic process;5.71974092440612e-34!GO:0044249;cellular biosynthetic process;6.28280333241385e-34!GO:0044267;cellular protein metabolic process;7.6872070973298e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.19006583784792e-32!GO:0009059;macromolecule biosynthetic process;2.19006583784792e-32!GO:0005740;mitochondrial envelope;1.29314979470017e-31!GO:0009058;biosynthetic process;2.89702335189771e-31!GO:0044451;nucleoplasm part;3.03105827301472e-31!GO:0022607;cellular component assembly;1.12274093210664e-30!GO:0019866;organelle inner membrane;3.25315364502639e-30!GO:0006886;intracellular protein transport;5.53690464904501e-30!GO:0031966;mitochondrial membrane;7.55198267326321e-30!GO:0005694;chromosome;4.41887565637308e-28!GO:0007049;cell cycle;4.59002132119433e-28!GO:0005743;mitochondrial inner membrane;8.40515934457893e-28!GO:0000166;nucleotide binding;1.48378039780235e-27!GO:0044445;cytosolic part;1.43631514548138e-26!GO:0051276;chromosome organization and biogenesis;2.72628805632402e-26!GO:0051649;establishment of cellular localization;1.64611140952356e-25!GO:0051641;cellular localization;2.97146380682051e-25!GO:0006512;ubiquitin cycle;3.30628943445015e-25!GO:0006974;response to DNA damage stimulus;3.84512413841242e-25!GO:0006119;oxidative phosphorylation;2.14282279205257e-24!GO:0044427;chromosomal part;2.5220950124805e-24!GO:0016462;pyrophosphatase activity;5.91333715721799e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.92795249162875e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;8.00317216613452e-24!GO:0006281;DNA repair;3.39144193961232e-23!GO:0017111;nucleoside-triphosphatase activity;4.50927861520435e-23!GO:0015935;small ribosomal subunit;1.03254429485881e-22!GO:0015934;large ribosomal subunit;1.47876215080114e-22!GO:0006457;protein folding;2.17894743965385e-22!GO:0016874;ligase activity;2.39959687984441e-22!GO:0044455;mitochondrial membrane part;2.40797661057196e-22!GO:0005730;nucleolus;4.53403209636235e-22!GO:0022402;cell cycle process;8.30762745171029e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;8.67892883984575e-22!GO:0043285;biopolymer catabolic process;4.64075937728586e-21!GO:0006323;DNA packaging;6.58017285180182e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;3.91939679492672e-20!GO:0022618;protein-RNA complex assembly;6.18946067676155e-20!GO:0019941;modification-dependent protein catabolic process;8.22395373662212e-20!GO:0043632;modification-dependent macromolecule catabolic process;8.22395373662212e-20!GO:0044265;cellular macromolecule catabolic process;9.57423566457341e-20!GO:0006511;ubiquitin-dependent protein catabolic process;1.70772610766112e-19!GO:0044257;cellular protein catabolic process;1.70939630036508e-19!GO:0000278;mitotic cell cycle;2.11955356463957e-19!GO:0031980;mitochondrial lumen;3.41938073541675e-19!GO:0005759;mitochondrial matrix;3.41938073541675e-19!GO:0019222;regulation of metabolic process;3.68567097558822e-19!GO:0030163;protein catabolic process;4.7123255357801e-19!GO:0009057;macromolecule catabolic process;1.0022642369174e-18!GO:0032553;ribonucleotide binding;2.41001205880107e-18!GO:0032555;purine ribonucleotide binding;2.41001205880107e-18!GO:0005746;mitochondrial respiratory chain;4.85673098503089e-18!GO:0006350;transcription;5.41437900338329e-18!GO:0008135;translation factor activity, nucleic acid binding;1.01102018580368e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.38642085046867e-17!GO:0022403;cell cycle phase;1.88868715225061e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;2.04274880171446e-17!GO:0000375;RNA splicing, via transesterification reactions;2.04274880171446e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.04274880171446e-17!GO:0017076;purine nucleotide binding;4.27060084343044e-17!GO:0051301;cell division;4.31843714182768e-17!GO:0006260;DNA replication;4.54560439474569e-17!GO:0042254;ribosome biogenesis and assembly;4.54560439474569e-17!GO:0000087;M phase of mitotic cell cycle;6.66201980658837e-17!GO:0050136;NADH dehydrogenase (quinone) activity;8.44128781322404e-17!GO:0003954;NADH dehydrogenase activity;8.44128781322404e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.44128781322404e-17!GO:0008134;transcription factor binding;1.14954681254469e-16!GO:0007067;mitosis;1.30901756246583e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.7201847507313e-16!GO:0000279;M phase;2.57738513352173e-16!GO:0031323;regulation of cellular metabolic process;3.28303654497667e-16!GO:0005761;mitochondrial ribosome;3.86984591448423e-16!GO:0000313;organellar ribosome;3.86984591448423e-16!GO:0051082;unfolded protein binding;4.35184292145504e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.37688304573461e-16!GO:0006605;protein targeting;4.7912679756772e-16!GO:0009719;response to endogenous stimulus;6.37594624751197e-16!GO:0006399;tRNA metabolic process;7.55500466283308e-16!GO:0005524;ATP binding;8.49279872175056e-16!GO:0032774;RNA biosynthetic process;1.7400235323157e-15!GO:0016887;ATPase activity;1.96029208604799e-15!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.38663811335412e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.52965689248437e-15!GO:0032559;adenyl ribonucleotide binding;2.61054970556927e-15!GO:0006351;transcription, DNA-dependent;2.75658076024687e-15!GO:0031965;nuclear membrane;3.12141016947032e-15!GO:0004386;helicase activity;4.19443725618452e-15!GO:0012505;endomembrane system;5.13189981981676e-15!GO:0010468;regulation of gene expression;5.84175966413711e-15!GO:0003677;DNA binding;6.01406401598163e-15!GO:0042623;ATPase activity, coupled;6.88076832172547e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.75022872129476e-15!GO:0042773;ATP synthesis coupled electron transport;7.75022872129476e-15!GO:0044453;nuclear membrane part;8.21427054300753e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.22031035317072e-14!GO:0045271;respiratory chain complex I;1.22031035317072e-14!GO:0005747;mitochondrial respiratory chain complex I;1.22031035317072e-14!GO:0016604;nuclear body;1.34657503380375e-14!GO:0006333;chromatin assembly or disassembly;1.46689225543805e-14!GO:0050794;regulation of cellular process;1.51201765917734e-14!GO:0051186;cofactor metabolic process;2.95061233776186e-14!GO:0048770;pigment granule;3.31055521106515e-14!GO:0042470;melanosome;3.31055521106515e-14!GO:0065004;protein-DNA complex assembly;4.05336116219582e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.46952655804836e-14!GO:0015630;microtubule cytoskeleton;5.962502731779e-14!GO:0030554;adenyl nucleotide binding;6.13367675002016e-14!GO:0048193;Golgi vesicle transport;7.91642319200864e-14!GO:0016568;chromatin modification;1.02325725313439e-13!GO:0005635;nuclear envelope;1.49530375028206e-13!GO:0045449;regulation of transcription;2.60924790689917e-13!GO:0044248;cellular catabolic process;2.9176535808285e-13!GO:0000785;chromatin;2.9943156119163e-13!GO:0005643;nuclear pore;3.06142599363349e-13!GO:0008026;ATP-dependent helicase activity;3.32210135042221e-13!GO:0016607;nuclear speck;3.76328470045628e-13!GO:0006913;nucleocytoplasmic transport;1.47495606499221e-12!GO:0003743;translation initiation factor activity;1.6360949893359e-12!GO:0050657;nucleic acid transport;2.27150433396954e-12!GO:0051236;establishment of RNA localization;2.27150433396954e-12!GO:0050658;RNA transport;2.27150433396954e-12!GO:0006355;regulation of transcription, DNA-dependent;2.57044930441926e-12!GO:0006403;RNA localization;2.57044930441926e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.85449292498918e-12!GO:0051169;nuclear transport;4.67664590359706e-12!GO:0008565;protein transporter activity;7.49641515838008e-12!GO:0043412;biopolymer modification;8.18558045492003e-12!GO:0006413;translational initiation;9.7255572740911e-12!GO:0065002;intracellular protein transport across a membrane;1.1679573067074e-11!GO:0006732;coenzyme metabolic process;1.34938062942875e-11!GO:0006364;rRNA processing;2.27297611793841e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.35727024830954e-11!GO:0004812;aminoacyl-tRNA ligase activity;2.35727024830954e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.35727024830954e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.38989995116565e-11!GO:0006366;transcription from RNA polymerase II promoter;3.99930942521495e-11!GO:0016192;vesicle-mediated transport;5.04599938821976e-11!GO:0044432;endoplasmic reticulum part;5.23255255587028e-11!GO:0003712;transcription cofactor activity;5.64807867755602e-11!GO:0016072;rRNA metabolic process;6.22064197858442e-11!GO:0043038;amino acid activation;6.38611993966158e-11!GO:0006418;tRNA aminoacylation for protein translation;6.38611993966158e-11!GO:0043039;tRNA aminoacylation;6.38611993966158e-11!GO:0006446;regulation of translational initiation;6.52920583355162e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.47361607303533e-11!GO:0008639;small protein conjugating enzyme activity;1.04675728654794e-10!GO:0009259;ribonucleotide metabolic process;1.0663646763334e-10!GO:0005783;endoplasmic reticulum;1.14647163575957e-10!GO:0046930;pore complex;1.35861408944629e-10!GO:0004842;ubiquitin-protein ligase activity;1.59976301752514e-10!GO:0043566;structure-specific DNA binding;2.06952369647468e-10!GO:0019787;small conjugating protein ligase activity;2.23139413938861e-10!GO:0051028;mRNA transport;2.32031808112737e-10!GO:0006334;nucleosome assembly;2.46707551530791e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.4761578107406e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.69564499851892e-10!GO:0005794;Golgi apparatus;2.97175568769227e-10!GO:0017038;protein import;3.45243610610512e-10!GO:0031497;chromatin assembly;3.56638798901733e-10!GO:0006163;purine nucleotide metabolic process;4.61306153888346e-10!GO:0050789;regulation of biological process;7.17672636064926e-10!GO:0043687;post-translational protein modification;8.62143073353634e-10!GO:0006464;protein modification process;1.03443975715376e-09!GO:0009150;purine ribonucleotide metabolic process;1.61059148330561e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.62910437969718e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.68976613220472e-09!GO:0000074;regulation of progression through cell cycle;1.83923405272364e-09!GO:0003697;single-stranded DNA binding;1.8976557084468e-09!GO:0051726;regulation of cell cycle;1.90502169172736e-09!GO:0009260;ribonucleotide biosynthetic process;2.13903436102352e-09!GO:0016881;acid-amino acid ligase activity;2.16984884597152e-09!GO:0006164;purine nucleotide biosynthetic process;4.13896892723289e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.31352189954682e-09!GO:0005667;transcription factor complex;4.52294104827671e-09!GO:0015986;ATP synthesis coupled proton transport;6.04469442228685e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.04469442228685e-09!GO:0009141;nucleoside triphosphate metabolic process;6.47066110538322e-09!GO:0006261;DNA-dependent DNA replication;6.87398913397714e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.17910156736848e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.17910156736848e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.42151924653545e-08!GO:0000775;chromosome, pericentric region;1.45701546212988e-08!GO:0009060;aerobic respiration;1.66291867361242e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.73015951670758e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73015951670758e-08!GO:0019829;cation-transporting ATPase activity;1.84114485726864e-08!GO:0032446;protein modification by small protein conjugation;2.34568028820314e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.7153959130696e-08!GO:0000245;spliceosome assembly;2.79286690215262e-08!GO:0005813;centrosome;2.82574738280587e-08!GO:0016779;nucleotidyltransferase activity;2.89346008297593e-08!GO:0051188;cofactor biosynthetic process;3.42142104037761e-08!GO:0045333;cellular respiration;3.64626851133827e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.69706260296623e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.69706260296623e-08!GO:0046034;ATP metabolic process;4.15460980984972e-08!GO:0005815;microtubule organizing center;6.27734870353338e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.59990178664933e-08!GO:0009055;electron carrier activity;8.59990178664933e-08!GO:0009056;catabolic process;8.88650610746545e-08!GO:0016567;protein ubiquitination;9.16105843645908e-08!GO:0006754;ATP biosynthetic process;1.40774531320127e-07!GO:0006753;nucleoside phosphate metabolic process;1.40774531320127e-07!GO:0005768;endosome;1.58031581306768e-07!GO:0003724;RNA helicase activity;2.03738595317526e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.1535327535011e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.1535327535011e-07!GO:0005793;ER-Golgi intermediate compartment;3.03763457373725e-07!GO:0005819;spindle;3.33159433496435e-07!GO:0043623;cellular protein complex assembly;3.36612217775961e-07!GO:0005789;endoplasmic reticulum membrane;3.90134960955029e-07!GO:0005874;microtubule;4.35874252093382e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.92956916437534e-07!GO:0006099;tricarboxylic acid cycle;5.14495263363213e-07!GO:0046356;acetyl-CoA catabolic process;5.14495263363213e-07!GO:0009108;coenzyme biosynthetic process;5.64946512002526e-07!GO:0044440;endosomal part;5.87333207451685e-07!GO:0010008;endosome membrane;5.87333207451685e-07!GO:0016564;transcription repressor activity;6.36929086539527e-07!GO:0007017;microtubule-based process;6.58340797612578e-07!GO:0045259;proton-transporting ATP synthase complex;6.62977347564116e-07!GO:0006461;protein complex assembly;6.79387089229876e-07!GO:0000151;ubiquitin ligase complex;6.9683132403645e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.02293056324806e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.80697121254768e-07!GO:0003899;DNA-directed RNA polymerase activity;1.05599869203557e-06!GO:0006084;acetyl-CoA metabolic process;1.0964017793235e-06!GO:0003713;transcription coactivator activity;1.1178716998956e-06!GO:0008033;tRNA processing;1.27288862438152e-06!GO:0005788;endoplasmic reticulum lumen;1.3891698948896e-06!GO:0051170;nuclear import;2.17910305168212e-06!GO:0007005;mitochondrion organization and biogenesis;2.2625116519835e-06!GO:0031324;negative regulation of cellular metabolic process;2.41181263941733e-06!GO:0016563;transcription activator activity;2.43114215634621e-06!GO:0008094;DNA-dependent ATPase activity;2.67173849007523e-06!GO:0051427;hormone receptor binding;3.2942526320754e-06!GO:0009109;coenzyme catabolic process;3.55856280353443e-06!GO:0007051;spindle organization and biogenesis;3.59523265352584e-06!GO:0006606;protein import into nucleus;3.68098017655927e-06!GO:0016740;transferase activity;3.81434965895238e-06!GO:0005657;replication fork;3.81434965895238e-06!GO:0008654;phospholipid biosynthetic process;4.02370975371307e-06!GO:0016481;negative regulation of transcription;4.81726022565729e-06!GO:0051168;nuclear export;4.97184651739522e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.97027437615663e-06!GO:0006752;group transfer coenzyme metabolic process;6.24228569133436e-06!GO:0048475;coated membrane;6.84489030184858e-06!GO:0030117;membrane coat;6.84489030184858e-06!GO:0009892;negative regulation of metabolic process;7.0982525979598e-06!GO:0035257;nuclear hormone receptor binding;7.65274666315006e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.72501821629349e-06!GO:0008186;RNA-dependent ATPase activity;7.83803774472168e-06!GO:0051187;cofactor catabolic process;8.17095505993824e-06!GO:0031988;membrane-bound vesicle;8.36762674514113e-06!GO:0003924;GTPase activity;8.44191517924983e-06!GO:0006613;cotranslational protein targeting to membrane;1.01067553666975e-05!GO:0005762;mitochondrial large ribosomal subunit;1.01273530440625e-05!GO:0000315;organellar large ribosomal subunit;1.01273530440625e-05!GO:0009117;nucleotide metabolic process;1.05545319047464e-05!GO:0005770;late endosome;1.30416739546502e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.30416739546502e-05!GO:0006414;translational elongation;1.50762935336865e-05!GO:0003702;RNA polymerase II transcription factor activity;1.60795887119854e-05!GO:0016363;nuclear matrix;1.75368232623559e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.87211144244595e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.02720097607415e-05!GO:0000786;nucleosome;2.26392116884882e-05!GO:0000314;organellar small ribosomal subunit;2.28373622985102e-05!GO:0005763;mitochondrial small ribosomal subunit;2.28373622985102e-05!GO:0015631;tubulin binding;2.4086511650259e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.52433718167798e-05!GO:0004004;ATP-dependent RNA helicase activity;2.62724791848949e-05!GO:0000075;cell cycle checkpoint;3.33740027667634e-05!GO:0016859;cis-trans isomerase activity;3.43828123193335e-05!GO:0016853;isomerase activity;3.44772210437668e-05!GO:0051329;interphase of mitotic cell cycle;3.68826306689115e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.80307751264386e-05!GO:0006302;double-strand break repair;4.00291486267001e-05!GO:0008270;zinc ion binding;4.15645994016291e-05!GO:0000228;nuclear chromosome;4.27118447768514e-05!GO:0031982;vesicle;4.47902788488171e-05!GO:0043021;ribonucleoprotein binding;4.80102320346486e-05!GO:0044452;nucleolar part;4.91865839936256e-05!GO:0003714;transcription corepressor activity;4.93362518296036e-05!GO:0003729;mRNA binding;4.97136488610442e-05!GO:0030120;vesicle coat;5.17446617457919e-05!GO:0030662;coated vesicle membrane;5.17446617457919e-05!GO:0003682;chromatin binding;5.54121948296229e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.67003865139845e-05!GO:0031410;cytoplasmic vesicle;5.98087944687779e-05!GO:0003684;damaged DNA binding;6.19359198305327e-05!GO:0016741;transferase activity, transferring one-carbon groups;6.20265911267646e-05!GO:0005525;GTP binding;6.3418052790367e-05!GO:0003746;translation elongation factor activity;6.36230582310432e-05!GO:0003690;double-stranded DNA binding;6.47674847896618e-05!GO:0043681;protein import into mitochondrion;6.57071212659746e-05!GO:0044431;Golgi apparatus part;6.73680245082893e-05!GO:0004298;threonine endopeptidase activity;6.92938818071116e-05!GO:0005769;early endosome;7.4976635065142e-05!GO:0006338;chromatin remodeling;8.21265087956877e-05!GO:0000059;protein import into nucleus, docking;8.26844583734327e-05!GO:0008168;methyltransferase activity;8.48802415466656e-05!GO:0006402;mRNA catabolic process;0.000115295024214047!GO:0031072;heat shock protein binding;0.000121099573916069!GO:0000776;kinetochore;0.000124384093413361!GO:0006383;transcription from RNA polymerase III promoter;0.000125971230807833!GO:0045454;cell redox homeostasis;0.000150324114647544!GO:0006352;transcription initiation;0.000152346885703392!GO:0003678;DNA helicase activity;0.000154999841756917!GO:0046474;glycerophospholipid biosynthetic process;0.000156166848945062!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00016340173608236!GO:0019843;rRNA binding;0.000166828905344287!GO:0006612;protein targeting to membrane;0.000167111647596418!GO:0051325;interphase;0.000169512257865512!GO:0000049;tRNA binding;0.000175502016012474!GO:0007059;chromosome segregation;0.000195274768073002!GO:0065007;biological regulation;0.000205364438754015!GO:0015980;energy derivation by oxidation of organic compounds;0.000209374206181602!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000229493205895158!GO:0005798;Golgi-associated vesicle;0.000308534442337052!GO:0044454;nuclear chromosome part;0.000308534442337052!GO:0016787;hydrolase activity;0.000322245957059345!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000327728508344854!GO:0003711;transcription elongation regulator activity;0.000344490844072203!GO:0046489;phosphoinositide biosynthetic process;0.000369073153145629!GO:0045786;negative regulation of progression through cell cycle;0.000388552009666624!GO:0006626;protein targeting to mitochondrion;0.000391103962659957!GO:0008250;oligosaccharyl transferase complex;0.000430598447284164!GO:0051087;chaperone binding;0.000444018599693986!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000457353693278144!GO:0006401;RNA catabolic process;0.000498031696235696!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0005164290516984!GO:0006310;DNA recombination;0.000519570588515297!GO:0006405;RNA export from nucleus;0.000543928958950978!GO:0006793;phosphorus metabolic process;0.000561981109113629!GO:0006796;phosphate metabolic process;0.000561981109113629!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000580590335819999!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000581146942862293!GO:0005048;signal sequence binding;0.000585421320097712!GO:0005876;spindle microtubule;0.000604427062351146!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000606994436506017!GO:0048523;negative regulation of cellular process;0.000613150388152559!GO:0032561;guanyl ribonucleotide binding;0.000621418739149859!GO:0019001;guanyl nucleotide binding;0.000621418739149859!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00064392620732583!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00064392620732583!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00064392620732583!GO:0007052;mitotic spindle organization and biogenesis;0.000715951351752407!GO:0012501;programmed cell death;0.000715951351752407!GO:0006818;hydrogen transport;0.000720278625618422!GO:0045892;negative regulation of transcription, DNA-dependent;0.000772493401693537!GO:0008017;microtubule binding;0.000856618385490462!GO:0004576;oligosaccharyl transferase activity;0.00086095292744116!GO:0016310;phosphorylation;0.000872819360350566!GO:0009165;nucleotide biosynthetic process;0.000872819360350566!GO:0005684;U2-dependent spliceosome;0.000877993949549949!GO:0005773;vacuole;0.000934055634155621!GO:0051789;response to protein stimulus;0.000938743412409959!GO:0006986;response to unfolded protein;0.000938743412409959!GO:0051052;regulation of DNA metabolic process;0.000954226387288678!GO:0031124;mRNA 3'-end processing;0.000968386134575724!GO:0006891;intra-Golgi vesicle-mediated transport;0.000978869749679766!GO:0015992;proton transport;0.00098867481955318!GO:0016272;prefoldin complex;0.0010897761104454!GO:0033116;ER-Golgi intermediate compartment membrane;0.00113802046347302!GO:0005669;transcription factor TFIID complex;0.00114240997484816!GO:0006915;apoptosis;0.0011430580796977!GO:0030880;RNA polymerase complex;0.00114422759075127!GO:0006839;mitochondrial transport;0.00114647568136868!GO:0051246;regulation of protein metabolic process;0.0011506804882166!GO:0051920;peroxiredoxin activity;0.00115298999868994!GO:0005875;microtubule associated complex;0.00117155782984241!GO:0046467;membrane lipid biosynthetic process;0.00117155782984241!GO:0008022;protein C-terminus binding;0.00119852130678865!GO:0048471;perinuclear region of cytoplasm;0.00132229361757789!GO:0031968;organelle outer membrane;0.00141560187165296!GO:0043284;biopolymer biosynthetic process;0.00164612757274953!GO:0005637;nuclear inner membrane;0.00166080713319427!GO:0048487;beta-tubulin binding;0.00167847027626553!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00168587645951595!GO:0005741;mitochondrial outer membrane;0.00172689507824554!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00172689507824554!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00172689507824554!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00176251190636024!GO:0019783;small conjugating protein-specific protease activity;0.00186004237280125!GO:0007010;cytoskeleton organization and biogenesis;0.00190149420147186!GO:0030384;phosphoinositide metabolic process;0.00194227488651579!GO:0006378;mRNA polyadenylation;0.00201700762837485!GO:0016790;thiolester hydrolase activity;0.0020715473739312!GO:0051252;regulation of RNA metabolic process;0.00209289966435873!GO:0007088;regulation of mitosis;0.0021111762861061!GO:0030867;rough endoplasmic reticulum membrane;0.0021111762861061!GO:0000139;Golgi membrane;0.0021111762861061!GO:0007006;mitochondrial membrane organization and biogenesis;0.00212652392365425!GO:0019867;outer membrane;0.00215081019406122!GO:0046914;transition metal ion binding;0.00215590158707177!GO:0040029;regulation of gene expression, epigenetic;0.00217612166162936!GO:0006650;glycerophospholipid metabolic process;0.0022384187186487!GO:0035258;steroid hormone receptor binding;0.00226019705013312!GO:0006611;protein export from nucleus;0.00235572868524222!GO:0000922;spindle pole;0.00241764762475299!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00243743440617448!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00243743440617448!GO:0015399;primary active transmembrane transporter activity;0.00243743440617448!GO:0007093;mitotic cell cycle checkpoint;0.00249454127529768!GO:0018196;peptidyl-asparagine modification;0.00250281556238613!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00250281556238613!GO:0031902;late endosome membrane;0.00250471683525377!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00250948333323292!GO:0000428;DNA-directed RNA polymerase complex;0.00250948333323292!GO:0004843;ubiquitin-specific protease activity;0.00253529647454904!GO:0048500;signal recognition particle;0.00272422260753959!GO:0000323;lytic vacuole;0.00276333471772413!GO:0005764;lysosome;0.00276333471772413!GO:0045045;secretory pathway;0.00280911385735025!GO:0030521;androgen receptor signaling pathway;0.0028921459959777!GO:0008219;cell death;0.00290291354934921!GO:0016265;death;0.00290291354934921!GO:0000118;histone deacetylase complex;0.00294504910483363!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00303256748444843!GO:0043596;nuclear replication fork;0.00308782798164684!GO:0006916;anti-apoptosis;0.00316329289512367!GO:0008180;signalosome;0.00338012499184588!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00346015941327236!GO:0006595;polyamine metabolic process;0.00349316676241404!GO:0008276;protein methyltransferase activity;0.00365288198062927!GO:0030137;COPI-coated vesicle;0.00365935371543761!GO:0006497;protein amino acid lipidation;0.00377053418621817!GO:0008312;7S RNA binding;0.00389360636828995!GO:0004221;ubiquitin thiolesterase activity;0.00407855133779052!GO:0006672;ceramide metabolic process;0.00424293794800436!GO:0022890;inorganic cation transmembrane transporter activity;0.00439560737385935!GO:0032508;DNA duplex unwinding;0.00444587510371296!GO:0032392;DNA geometric change;0.00444587510371296!GO:0000792;heterochromatin;0.00459725932077305!GO:0006284;base-excision repair;0.00461644015199475!GO:0031123;RNA 3'-end processing;0.00464478435020582!GO:0030663;COPI coated vesicle membrane;0.00472040363983888!GO:0030126;COPI vesicle coat;0.00472040363983888!GO:0032259;methylation;0.00495075146268097!GO:0006506;GPI anchor biosynthetic process;0.00518451176667005!GO:0032200;telomere organization and biogenesis;0.00531126153487423!GO:0000723;telomere maintenance;0.00531126153487423!GO:0006505;GPI anchor metabolic process;0.00541398555161892!GO:0006289;nucleotide-excision repair;0.00557721374550344!GO:0051287;NAD binding;0.00563775604786101!GO:0007021;tubulin folding;0.00567732494960424!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00581485695422474!GO:0000096;sulfur amino acid metabolic process;0.00582622003531344!GO:0008139;nuclear localization sequence binding;0.00586008777878285!GO:0051539;4 iron, 4 sulfur cluster binding;0.00611959669761975!GO:0009451;RNA modification;0.0061390860584188!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00618166275633889!GO:0045047;protein targeting to ER;0.00618166275633889!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00618166275633889!GO:0048519;negative regulation of biological process;0.00640388992718365!GO:0000209;protein polyubiquitination;0.00661012874429257!GO:0000082;G1/S transition of mitotic cell cycle;0.00675639362382285!GO:0006354;RNA elongation;0.00691763255131989!GO:0043414;biopolymer methylation;0.00692683833199241!GO:0030518;steroid hormone receptor signaling pathway;0.00705750517465092!GO:0004674;protein serine/threonine kinase activity;0.00710122783985255!GO:0042393;histone binding;0.00711041235680141!GO:0006607;NLS-bearing substrate import into nucleus;0.00716677818752246!GO:0005832;chaperonin-containing T-complex;0.00731363717862988!GO:0005905;coated pit;0.00747046805297495!GO:0004527;exonuclease activity;0.00747046805297495!GO:0044450;microtubule organizing center part;0.00770573027360495!GO:0051540;metal cluster binding;0.00788440008006003!GO:0051536;iron-sulfur cluster binding;0.00788440008006003!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00788440008006003!GO:0006270;DNA replication initiation;0.00796431041271943!GO:0016197;endosome transport;0.00853912313645009!GO:0016584;nucleosome positioning;0.00873632150862416!GO:0006376;mRNA splice site selection;0.00878960253721066!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00878960253721066!GO:0005869;dynactin complex;0.00882839081846986!GO:0006740;NADPH regeneration;0.00898941492039205!GO:0006098;pentose-phosphate shunt;0.00898941492039205!GO:0043022;ribosome binding;0.00898941492039205!GO:0005758;mitochondrial intermembrane space;0.00906498475902254!GO:0004518;nuclease activity;0.00923171714527125!GO:0046519;sphingoid metabolic process;0.00926509849901844!GO:0009303;rRNA transcription;0.00931295808161216!GO:0000339;RNA cap binding;0.00956671969259816!GO:0031901;early endosome membrane;0.00960697768191015!GO:0000152;nuclear ubiquitin ligase complex;0.00979750032424474!GO:0016407;acetyltransferase activity;0.0099586358478571!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00997385125316323!GO:0031252;leading edge;0.0101690299523215!GO:0030118;clathrin coat;0.0102128813579093!GO:0043488;regulation of mRNA stability;0.0102137646294633!GO:0043487;regulation of RNA stability;0.0102137646294633!GO:0006400;tRNA modification;0.0105054140923604!GO:0006268;DNA unwinding during replication;0.0105869128269849!GO:0000781;chromosome, telomeric region;0.0106942339809675!GO:0016585;chromatin remodeling complex;0.0107526134736908!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0109467961468931!GO:0015002;heme-copper terminal oxidase activity;0.0109467961468931!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0109467961468931!GO:0004129;cytochrome-c oxidase activity;0.0109467961468931!GO:0042158;lipoprotein biosynthetic process;0.0111026971912025!GO:0005885;Arp2/3 protein complex;0.011803274795074!GO:0030176;integral to endoplasmic reticulum membrane;0.0121005158368612!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0122004385211031!GO:0030027;lamellipodium;0.01237413089096!GO:0003887;DNA-directed DNA polymerase activity;0.0130289163856569!GO:0005680;anaphase-promoting complex;0.0131202615959745!GO:0043631;RNA polyadenylation;0.0132275837026459!GO:0016126;sterol biosynthetic process;0.013325833442365!GO:0043601;nuclear replisome;0.0134258941448308!GO:0030894;replisome;0.0134258941448308!GO:0031970;organelle envelope lumen;0.0134760772559655!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0141301648353695!GO:0000910;cytokinesis;0.0149547925380963!GO:0007034;vacuolar transport;0.0150538194868704!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.015275954548498!GO:0005881;cytoplasmic microtubule;0.0154694246293232!GO:0000793;condensed chromosome;0.0155854966723274!GO:0000123;histone acetyltransferase complex;0.0157079708706709!GO:0019899;enzyme binding;0.0157153993678199!GO:0009116;nucleoside metabolic process;0.0159686689176501!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0161317652610528!GO:0010257;NADH dehydrogenase complex assembly;0.0161317652610528!GO:0033108;mitochondrial respiratory chain complex assembly;0.0161317652610528!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0161663557714384!GO:0004003;ATP-dependent DNA helicase activity;0.0172654581397978!GO:0008097;5S rRNA binding;0.0174211084039138!GO:0043069;negative regulation of programmed cell death;0.0174549436824961!GO:0007004;telomere maintenance via telomerase;0.0180357221120092!GO:0000790;nuclear chromatin;0.0180889295997075!GO:0006275;regulation of DNA replication;0.0184790360270044!GO:0046966;thyroid hormone receptor binding;0.0185878401972888!GO:0016044;membrane organization and biogenesis;0.018721986619392!GO:0007264;small GTPase mediated signal transduction;0.0189604190096017!GO:0008287;protein serine/threonine phosphatase complex;0.0190087888540849!GO:0000178;exosome (RNase complex);0.0191582851334747!GO:0007040;lysosome organization and biogenesis;0.019461655305898!GO:0030503;regulation of cell redox homeostasis;0.019461655305898!GO:0006220;pyrimidine nucleotide metabolic process;0.0201058165481145!GO:0043492;ATPase activity, coupled to movement of substances;0.0206501373513841!GO:0043189;H4/H2A histone acetyltransferase complex;0.0208676227908314!GO:0006091;generation of precursor metabolites and energy;0.0212955936713943!GO:0030132;clathrin coat of coated pit;0.0212955936713943!GO:0031371;ubiquitin conjugating enzyme complex;0.0215088235953036!GO:0030134;ER to Golgi transport vesicle;0.0223177907484988!GO:0045815;positive regulation of gene expression, epigenetic;0.0223177907484988!GO:0000725;recombinational repair;0.0237372494461382!GO:0000724;double-strand break repair via homologous recombination;0.0237372494461382!GO:0031625;ubiquitin protein ligase binding;0.0238273516872007!GO:0005791;rough endoplasmic reticulum;0.0256414509953026!GO:0035267;NuA4 histone acetyltransferase complex;0.0259457587803256!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0264175260007736!GO:0000726;non-recombinational repair;0.0264175260007736!GO:0003756;protein disulfide isomerase activity;0.0264175260007736!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0264175260007736!GO:0043066;negative regulation of apoptosis;0.0265324132507274!GO:0030133;transport vesicle;0.0266887760967549!GO:0008320;protein transmembrane transporter activity;0.0266887760967549!GO:0006892;post-Golgi vesicle-mediated transport;0.0270652850741545!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0270652850741545!GO:0022884;macromolecule transmembrane transporter activity;0.0270920566688859!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0270920566688859!GO:0004549;tRNA-specific ribonuclease activity;0.0275469299380081!GO:0005774;vacuolar membrane;0.0278561159657409!GO:0016018;cyclosporin A binding;0.0278561159657409!GO:0031570;DNA integrity checkpoint;0.0286131488989199!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0286131488989199!GO:0050681;androgen receptor binding;0.0289434242413135!GO:0006406;mRNA export from nucleus;0.0291263193605314!GO:0005938;cell cortex;0.0294847626318364!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0294847626318364!GO:0009081;branched chain family amino acid metabolic process;0.029588323681262!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.029588323681262!GO:0030496;midbody;0.0296496920650552!GO:0006695;cholesterol biosynthetic process;0.0297059859533094!GO:0030508;thiol-disulfide exchange intermediate activity;0.030198368762671!GO:0006278;RNA-dependent DNA replication;0.0313088357014181!GO:0045947;negative regulation of translational initiation;0.0316763244478499!GO:0007018;microtubule-based movement;0.0317966855058992!GO:0005663;DNA replication factor C complex;0.0326509632235551!GO:0004532;exoribonuclease activity;0.0338411167863012!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0338411167863012!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0339382072521873!GO:0045039;protein import into mitochondrial inner membrane;0.0339382072521873!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0340456258029854!GO:0005784;translocon complex;0.0340616159420774!GO:0004526;ribonuclease P activity;0.0349275232425082!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0349655407374846!GO:0030522;intracellular receptor-mediated signaling pathway;0.0352261359189908!GO:0016279;protein-lysine N-methyltransferase activity;0.0360494854998828!GO:0018024;histone-lysine N-methyltransferase activity;0.0360494854998828!GO:0016278;lysine N-methyltransferase activity;0.0360494854998828!GO:0042054;histone methyltransferase activity;0.0365412683511725!GO:0007033;vacuole organization and biogenesis;0.0370448731556183!GO:0005732;small nucleolar ribonucleoprotein complex;0.0373400407605416!GO:0000097;sulfur amino acid biosynthetic process;0.037389728874191!GO:0000819;sister chromatid segregation;0.0376528581984999!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0377365136781843!GO:0051059;NF-kappaB binding;0.0378859301803903!GO:0007041;lysosomal transport;0.0379538094088091!GO:0006733;oxidoreduction coenzyme metabolic process;0.0379551488168286!GO:0016569;covalent chromatin modification;0.0387636802520108!GO:0051098;regulation of binding;0.0392464645284844!GO:0030911;TPR domain binding;0.0393023877083591!GO:0046128;purine ribonucleoside metabolic process;0.0393023877083591!GO:0042278;purine nucleoside metabolic process;0.0393023877083591!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0396055624551314!GO:0005862;muscle thin filament tropomyosin;0.0406495288247682!GO:0016581;NuRD complex;0.0408070154520872!GO:0000070;mitotic sister chromatid segregation;0.0426403921328071!GO:0017134;fibroblast growth factor binding;0.0426403921328071!GO:0003923;GPI-anchor transamidase activity;0.0433214103193248!GO:0016255;attachment of GPI anchor to protein;0.0433214103193248!GO:0042765;GPI-anchor transamidase complex;0.0433214103193248!GO:0009956;radial pattern formation;0.043648865961709!GO:0031461;cullin-RING ubiquitin ligase complex;0.043648865961709!GO:0006596;polyamine biosynthetic process;0.0438002140682787!GO:0030433;ER-associated protein catabolic process;0.0438242540125605!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0438242540125605!GO:0032984;macromolecular complex disassembly;0.0441834649779719!GO:0043130;ubiquitin binding;0.0444393538674867!GO:0032182;small conjugating protein binding;0.0444393538674867!GO:0004402;histone acetyltransferase activity;0.0450576767400332!GO:0004468;lysine N-acetyltransferase activity;0.0450576767400332!GO:0019206;nucleoside kinase activity;0.0454006809069526!GO:0008143;poly(A) binding;0.0465296524321218!GO:0009083;branched chain family amino acid catabolic process;0.0466245671466126!GO:0030658;transport vesicle membrane;0.0470049949832379!GO:0030127;COPII vesicle coat;0.0474463039382942!GO:0012507;ER to Golgi transport vesicle membrane;0.0474463039382942!GO:0005689;U12-dependent spliceosome;0.0481120851113991!GO:0008234;cysteine-type peptidase activity;0.0482987711435927!GO:0043624;cellular protein complex disassembly;0.0482987711435927!GO:0050662;coenzyme binding;0.048491525620866!GO:0004448;isocitrate dehydrogenase activity;0.0486318265254707!GO:0008601;protein phosphatase type 2A regulator activity;0.0489025653022851!GO:0005652;nuclear lamina;0.0489898179498802!GO:0042809;vitamin D receptor binding;0.0491515816761575!GO:0000805;X chromosome;0.0494012419990783!GO:0001740;Barr body;0.0494012419990783!GO:0042176;regulation of protein catabolic process;0.0494751901226941!GO:0030119;AP-type membrane coat adaptor complex;0.0497873059101715
 |sample_id=10841
 |sample_note=
@@ Line 75: / Line 102: @@
 |sample_tissue=lung
 |top_motifs=NRF1:2.0144704726;YY1:1.97750521856;HOX{A6,A7,B6,B7}:1.95481266797;RFX1:1.69218433491;VSX1,2:1.66480516058;POU1F1:1.45200431006;PBX1:1.44419219657;GFI1:1.44051605217;EVI1:1.3754525115;ZNF143:1.31317879397;FOXM1:1.29363586362;RBPJ:1.26707810154;SOX17:1.24430777317;ELK1,4_GABP{A,B1}:1.19493756655;HOX{A5,B5}:1.16601077422;NFY{A,B,C}:1.15135990952;TFDP1:1.13309921466;E2F1..5:1.09345961401;STAT1,3:1.0863317733;CRX:1.07422801889;CDX1,2,4:1.05939080281;CDC5L:1.03148973466;TEF:0.974767408332;NKX6-1,2:0.971053223014;ALX1:0.934808850352;BREu{core}:0.925945662535;DBP:0.9039628844;ZBTB16:0.829369528572;STAT5{A,B}:0.822081314748;ARID5B:0.752188200067;MYB:0.748612866461;GZF1:0.747640005459;RFX2..5_RFXANK_RFXAP:0.74229690385;ONECUT1,2:0.74047114388;POU6F1:0.727621361919;PAX1,9:0.727084663687;FOXN1:0.725490515674;PITX1..3:0.700116913047;SREBF1,2:0.698522384571;PATZ1:0.639622089391;SOX{8,9,10}:0.617932116698;HBP1_HMGB_SSRP1_UBTF:0.5582515156;LEF1_TCF7_TCF7L1,2:0.550105935011;PRRX1,2:0.516864126047;FOXA2:0.484170149171;POU2F1..3:0.482111631806;HOXA9_MEIS1:0.440592618692;AIRE:0.436532584593;NKX2-1,4:0.431526522432;PAX8:0.429985102661;IKZF2:0.393119136044;FOXP1:0.384444140998;RXR{A,B,G}:0.384443936396;NANOG:0.378835176176;HSF1,2:0.374384407986;HIC1:0.362928141649;NKX2-3_NKX2-5:0.335327981322;ATF5_CREB3:0.321181570149;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.300938487108;MZF1:0.291336070634;FOXL1:0.267436347188;OCT4_SOX2{dimer}:0.266955686379;SOX5:0.255866107191;GFI1B:0.250046340532;T:0.244810592977;CUX2:0.22795584317;bHLH_family:0.221327554965;REST:0.210755651;PAX4:0.183624896758;ATF4:0.183203768899;PAX6:0.182014832723;GATA6:0.18124084265;BPTF:0.172343296747;UFEwm:0.165789831189;CREB1:0.140204272467;ATF2:0.127720268278;HOX{A4,D4}:0.120892861879;PPARG:0.0856361840436;ZFP161:0.0609489683005;ZBTB6:0.0581783326792;HIF1A:0.0499985253443;FOX{I1,J2}:0.0262628116803;POU3F1..4:0.00180230132758;FOXQ1:-0.00301838424816;FOXP3:-0.00722991182561;EGR1..3:-0.0198772067583;NANOG{mouse}:-0.0245884132258;RORA:-0.0332403786675;NR5A1,2:-0.0421836744739;HNF1A:-0.0570790668372;NR6A1:-0.0588520662602;AHR_ARNT_ARNT2:-0.0734312157645;TFAP2B:-0.0750060556817;ADNP_IRX_SIX_ZHX:-0.0776520858715;FOXD3:-0.0792952870542;NR3C1:-0.0972463592204;RREB1:-0.12094183396;ESRRA:-0.132068543168;ZNF384:-0.134451203698;MED-1{core}:-0.141937576139;SRF:-0.143830675085;ZIC1..3:-0.149968690316;NHLH1,2:-0.167161146662;HNF4A_NR2F1,2:-0.186142927626;RUNX1..3:-0.211476418027;LHX3,4:-0.2248217115;MYBL2:-0.239709037639;TGIF1:-0.272329858537;MEF2{A,B,C,D}:-0.282471563147;AR:-0.314395728723;FOX{D1,D2}:-0.329189890714;ATF6:-0.331171906304;ZNF423:-0.336401685349;TAL1_TCF{3,4,12}:-0.339815472445;JUN:-0.341716623754;TOPORS:-0.343562685999;SNAI1..3:-0.344854972599;HMGA1,2:-0.350030604267;TEAD1:-0.352298444598;NKX3-1:-0.360817309806;TLX1..3_NFIC{dimer}:-0.371379780743;TLX2:-0.379302893953;GTF2A1,2:-0.379853602648;SP1:-0.39666591819;EN1,2:-0.407213148389;POU5F1:-0.428444470092;TBX4,5:-0.428724194948;TP53:-0.441283321336;PAX3,7:-0.453286209389;HAND1,2:-0.454935673805;ZEB1:-0.457625236167;MTE{core}:-0.46670798326;PDX1:-0.469837346859;HLF:-0.472692062017;ALX4:-0.484685761111;FOS_FOS{B,L1}_JUN{B,D}:-0.510023101899;GTF2I:-0.5162186805;ZNF148:-0.527569613043;FOX{F1,F2,J1}:-0.529566719702;NKX3-2:-0.544135952294;MTF1:-0.544462292449;NKX2-2,8:-0.552474221729;ESR1:-0.574854582968;IKZF1:-0.576489309092;NFE2:-0.583346566142;NFKB1_REL_RELA:-0.588845501911;PRDM1:-0.608161966006;DMAP1_NCOR{1,2}_SMARC:-0.621466180254;BACH2:-0.626262869403;TBP:-0.630187597645;GATA4:-0.654410398383;NFIX:-0.659984598846;SPI1:-0.678248316105;FOSL2:-0.685792177081;MYOD1:-0.688956314911;LMO2:-0.692660283147;SPIB:-0.703513552648;NFE2L1:-0.729439179379;NFE2L2:-0.730709767591;KLF4:-0.738215568365;XBP1:-0.778272699902;XCPE1{core}:-0.796175144702;MYFfamily:-0.817372020753;PAX5:-0.839593557742;PAX2:-0.871380483752;NFIL3:-0.871426756758;CEBPA,B_DDIT3:-0.874828251322;EBF1:-0.875581031381;ETS1,2:-0.930461454923;HES1:-0.945981183675;FOXO1,3,4:-0.955758738147;SOX2:-0.962508103999;ELF1,2,4:-1.01012558211;NR1H4:-1.01514682915;IRF7:-1.02738050715;ZNF238:-1.06758698861;SMAD1..7,9:-1.08112496282;IRF1,2:-1.12321837037;RXRA_VDR{dimer}:-1.12465869753;TFAP2{A,C}:-1.26566575211;SPZ1:-1.30177305569;NFATC1..3:-1.3201769925;MAFB:-1.41495513476;STAT2,4,6:-1.4336660991;MAZ:-1.46612129134;GCM1,2:-1.49422905813;TFAP4:-1.56539571582;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.5744831364;TFCP2:-1.59109174721;HMX1:-1.6015745567;EP300:-1.73198641127;GLI1..3:-1.90611213033
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10841-111E4;search_select_hide=table117:FF:10841-111E4
 }}

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FF:10841-111E4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0