FFCP PHASE1:Hg19::chr4:57547773..57547780,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84525|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24961|TSSclassifier=S|UniProt=Q9BPY8,G3V294,G3V469,E9PB55|association_with_transcript=91bp_to_ENST00000420433,ENST00000554144,ENST00000557328,NM_001145460,NM_032495,NM_139212,uc003hca.2,uc003hcb.2,uc003hcc.2,uc003hcd.2,uc003hce.2_5end|coexpression_cluster_id=C1942|description=CAGE_peak_12_at_HOPX_5end|id=chr4:57547773..57547780,-|ontology_enrichment_celltype=CL:0002605!9.15e-11!3;CL:0002623!2.63e-09!3|ontology_enrichment_celltype_v019=CL:0002605;1.07e-24;3!CL:0000047;1.37e-17;2!CL:0000128;6.39e-11;7!CL:0000126;6.39e-11;7!CL:0000127;6.39e-11;7!CL:0002319;2.18e-10;25|ontology_enrichment_celltype_v019_2=CL:0002605,1.12e-24,3;CL:0000128,6.51e-11,7;CL:0000126,6.51e-11,7;CL:0000127,6.51e-11,7;CL:0002453,6.51e-11,7;CL:0002319,2.34e-10,25;CL:0000047,8.33e-10,8|ontology_enrichment_development_v019=UBERON:0006241;9.57e-26;3!UBERON:0003057;9.57e-26;3!UBERON:0006601;2.06e-08;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.78e-86!57;UBERON:0005068!3.78e-86!57;UBERON:0006241!3.78e-86!57;UBERON:0007135!3.78e-86!57;UBERON:0001017!7.35e-76!82;UBERON:0005743!5.76e-75!86;UBERON:0002780!5.43e-73!41;UBERON:0001890!5.43e-73!41;UBERON:0006240!5.43e-73!41;UBERON:0003080!4.43e-71!42;UBERON:0002616!7.16e-70!59;UBERON:0002020!2.31e-69!34;UBERON:0003528!2.31e-69!34;UBERON:0001893!1.30e-68!34;UBERON:0001869!2.87e-68!32;UBERON:0000073!7.15e-67!94;UBERON:0001016!7.15e-67!94;UBERON:0002791!5.55e-66!33;UBERON:0003075!2.46e-62!86;UBERON:0007284!2.46e-62!86;UBERON:0000955!9.51e-61!69;UBERON:0006238!9.51e-61!69;UBERON:0002346!4.37e-59!90;UBERON:0000956!6.33e-54!25;UBERON:0000203!6.33e-54!25;UBERON:0003056!2.02e-49!61;UBERON:0002619!4.89e-45!22;UBERON:0000033!2.55e-41!123;UBERON:0001950!1.95e-39!20;UBERON:0007023!2.78e-39!115;UBERON:0000153!6.80e-39!129;UBERON:0007811!6.80e-39!129;UBERON:0004121!2.33e-37!169;UBERON:0000924!3.18e-36!173;UBERON:0006601!3.18e-36!173;UBERON:0000025!4.63e-19!194;UBERON:0000200!5.05e-19!6;UBERON:0002308!1.52e-16!9;UBERON:0000125!1.52e-16!9;UBERON:0004111!4.57e-16!241;UBERON:0003076!5.29e-16!15;UBERON:0003057!5.29e-16!15;UBERON:0002021!7.71e-16!5;UBERON:0000477!2.52e-14!286;UBERON:0001871!3.22e-14!7;UBERON:0002420!4.32e-12!9;UBERON:0007245!4.32e-12!9;UBERON:0010009!4.32e-12!9;UBERON:0010011!4.32e-12!9;UBERON:0000454!4.32e-12!9;UBERON:0002240!3.45e-11!3;UBERON:0009663!4.73e-11!7;UBERON:0002771!6.42e-11!3;UBERON:0000483!7.40e-11!309;UBERON:0000119!1.20e-10!312;UBERON:0000349!2.87e-10!5;UBERON:0000988!4.71e-10!3;UBERON:0000064!5.40e-10!219;UBERON:0000475!5.94e-10!365;UBERON:0002298!9.77e-10!8;UBERON:0004733!7.06e-09!12;UBERON:0002028!7.06e-09!12;UBERON:0007277!7.06e-09!12;UBERON:0004732!3.88e-08!13;UBERON:0002148!1.09e-07!2;UBERON:0009662!1.09e-07!2;UBERON:0000369!1.30e-07!4;UBERON:0002435!1.30e-07!4;UBERON:0000204!1.30e-07!4;UBERON:0010082!1.30e-07!4;UBERON:0000481!1.45e-07!347;UBERON:0001954!2.00e-07!2;UBERON:0003022!2.00e-07!2;UBERON:0002421!2.00e-07!2;UBERON:0002600!2.00e-07!2;UBERON:0001870!2.58e-07!2;UBERON:0001875!2.83e-07!2;UBERON:0006514!2.83e-07!2;UBERON:0001905!4.51e-07!2;UBERON:0002757!4.51e-07!2;UBERON:0010134!4.51e-07!2;UBERON:0002784!4.51e-07!2;UBERON:0005408!4.51e-07!2;UBERON:0001899!4.51e-07!2;UBERON:0001894!6.09e-07!7;UBERON:0006222!6.09e-07!7;UBERON:0002360!6.30e-07!2;UBERON:0000094!6.30e-07!2;UBERON:0007645!6.30e-07!2;UBERON:0005174!7.84e-07!5;UBERON:0001137!7.84e-07!5|ontology_enrichment_uberon_v019=UBERON:0003528;5.03e-46;34!UBERON:0002020;5.03e-46;34!UBERON:0002791;2.21e-42;32!UBERON:0001869;2.21e-42;32!UBERON:0000956;1.00e-41;25!UBERON:0000203;1.00e-41;25!UBERON:0001893;7.68e-37;34!UBERON:0002780;2.90e-27;41!UBERON:0001890;2.90e-27;41!UBERON:0002619;1.76e-26;22!UBERON:0002240;9.57e-26;3!UBERON:0005174;9.57e-26;3!UBERON:0001137;9.57e-26;3!UBERON:0000073;8.53e-25;53!UBERON:0002616;8.53e-25;53!UBERON:0001017;1.03e-23;75!UBERON:0001950;4.46e-23;20!UBERON:0000200;9.88e-22;6!UBERON:0002298;2.20e-21;6!UBERON:0000955;3.30e-20;68!UBERON:0002771;2.64e-17;2!UBERON:0001016;3.30e-17;83!UBERON:0002148;3.97e-17;2!UBERON:0006331;3.97e-17;2!UBERON:0009662;3.97e-17;2!UBERON:0002702;5.96e-17;2!UBERON:0000125;1.71e-14;9!UBERON:0002308;1.71e-14;9!UBERON:0000988;9.83e-12;3!UBERON:0001870;1.29e-11;3!UBERON:0001896;2.19e-11;3!UBERON:0005290;2.19e-11;3!UBERON:0001871;6.39e-11;6!UBERON:0004733;8.34e-11;12!UBERON:0002028;8.34e-11;12!UBERON:0004732;5.49e-10;13!UBERON:0002420;1.72e-08;9!UBERON:0007245;1.72e-08;9!UBERON:0010009;1.72e-08;9!UBERON:0010011;1.72e-08;9!UBERON:0000454;1.72e-08;9!UBERON:0002021;3.55e-07;5!UBERON:0000349;3.55e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.72e-58,56;UBERON:0005068,3.72e-58,56;UBERON:0006241,3.72e-58,56;UBERON:0007135,3.72e-58,56;UBERON:0001017,1.74e-56,81;UBERON:0003528,3.23e-55,34;UBERON:0002020,3.23e-55,34;UBERON:0001016,1.28e-50,89;UBERON:0002791,1.07e-44,3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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84525 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24961 | |||
|TSSclassifier=S | |||
|UniProt=Q9BPY8,G3V294,G3V469,E9PB55 | |||
|association_with_transcript=91bp_to_ENST00000420433,ENST00000554144,ENST00000557328,NM_001145460,NM_032495,NM_139212,uc003hca.2,uc003hcb.2,uc003hcc.2,uc003hcd.2,uc003hce.2_5end | |||
|coexpression_cluster_id=C1942 | |||
|description=CAGE_peak_12_at_HOPX_5end | |||
|id=chr4:57547773..57547780,- | |||
|ontology_enrichment_celltype=CL:0002605!9.15e-11!3;CL:0002623!2.63e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.07e-24;3!CL:0000047;1.37e-17;2!CL:0000128;6.39e-11;7!CL:0000126;6.39e-11;7!CL:0000127;6.39e-11;7!CL:0002319;2.18e-10;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.12e-24,3;CL:0000128,6.51e-11,7;CL:0000126,6.51e-11,7;CL:0000127,6.51e-11,7;CL:0002453,6.51e-11,7;CL:0002319,2.34e-10,25;CL:0000047,8.33e-10,8 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.57e-26;3!UBERON:0003057;9.57e-26;3!UBERON:0006601;2.06e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p12@HOPX | |||
}} |
Revision as of 11:12, 13 September 2013
Short description: | p12@HOPX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_HOPX_5end |
Coexpression cluster: | C1942_Neural_spinal_Astrocyte_Neurons_caudate_locus_medial |
Association with transcript: | 91bp_to_ENST00000420433, ENST00000554144, ENST00000557328, NM_001145460, NM_032495, NM_139212, uc003hca.2, uc003hcb.2, uc003hcc.2, uc003hcd.2, uc003hce.2_5end |
EntrezGene: | HOPX |
HGNC: | 24961 |
UniProt: | Q9BPY8G3V294G3V469E9PB55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.12e-24 | 3 |
oligodendrocyte | 6.51e-11 | 7 |
macroglial cell | 6.51e-11 | 7 |
astrocyte | 6.51e-11 | 7 |
oligodendrocyte precursor cell | 6.51e-11 | 7 |
neural cell | 2.34e-10 | 25 |
neuronal stem cell | 8.33e-10 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.