Personal tools

Coexpression cluster:C1958: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000481!2.66e-26!347;UBERON:0000475!8.77e-26!365;UBERON:0000025!4.81e-24!194;UBERON:0000477!1.63e-23!286;UBERON:0004111!5.25e-21!241;UBERON:0000073!1.06e-20!94;UBERON:0001016!1.06e-20!94;UBERON:0005743!1.29e-20!86;UBERON:0000119!2.61e-20!312;UBERON:0000483!8.74e-20!309;UBERON:0001017!1.40e-19!82;UBERON:0003075!2.58e-18!86;UBERON:0007284!2.58e-18!86;UBERON:0002616!4.69e-18!59;UBERON:0000955!4.39e-17!69;UBERON:0006238!4.39e-17!69;UBERON:0001049!7.00e-17!57;UBERON:0005068!7.00e-17!57;UBERON:0006241!7.00e-17!57;UBERON:0007135!7.00e-17!57;UBERON:0002346!8.31e-17!90;UBERON:0000033!8.40e-17!123;UBERON:0000153!2.78e-16!129;UBERON:0007811!2.78e-16!129;UBERON:0007023!5.71e-14!115;UBERON:0003056!1.20e-13!61;UBERON:0000468!1.96e-13!659;UBERON:0004121!3.72e-13!169;UBERON:0002385!5.70e-13!63;UBERON:0001015!5.70e-13!63;UBERON:0000383!5.70e-13!63;UBERON:0003080!6.99e-13!42;UBERON:0001134!1.20e-12!61;UBERON:0002036!1.20e-12!61;UBERON:0003082!1.20e-12!61;UBERON:0002780!1.22e-12!41;UBERON:0001890!1.22e-12!41;UBERON:0006240!1.22e-12!41;UBERON:0001637!1.87e-12!42;UBERON:0003509!1.87e-12!42;UBERON:0004572!1.87e-12!42;UBERON:0000924!2.10e-12!173;UBERON:0006601!2.10e-12!173;UBERON:0004573!3.80e-12!33;UBERON:0004571!3.80e-12!33;UBERON:0000922!1.10e-11!612;UBERON:0005256!1.24e-11!143;UBERON:0000914!1.51e-11!83;UBERON:0002329!1.51e-11!83;UBERON:0003077!1.51e-11!83;UBERON:0003059!1.51e-11!83;UBERON:0007282!1.51e-11!83;UBERON:0009618!1.51e-11!83;UBERON:0007285!1.51e-11!83;UBERON:0002020!4.49e-11!34;UBERON:0003528!4.49e-11!34;UBERON:0001893!5.87e-11!34;UBERON:0001869!9.92e-11!32;UBERON:0002100!1.00e-10!216;UBERON:0003914!1.19e-10!118;UBERON:0002791!1.35e-10!33;UBERON:0004290!2.55e-10!70;UBERON:0000467!3.80e-10!625;UBERON:0000480!5.88e-10!626;UBERON:0002050!6.01e-10!605;UBERON:0005423!6.01e-10!605;UBERON:0003103!6.69e-10!69;UBERON:0004872!8.00e-10!84;UBERON:0000923!1.02e-09!604;UBERON:0005291!1.02e-09!604;UBERON:0006598!1.02e-09!604;UBERON:0002532!1.02e-09!604;UBERON:0000956!2.18e-08!25;UBERON:0000203!2.18e-08!25;UBERON:0000062!3.20e-08!511;UBERON:0000064!5.14e-08!219;UBERON:0000948!1.16e-07!24;UBERON:0005498!1.16e-07!24;UBERON:0004140!1.16e-07!24;UBERON:0009881!1.16e-07!24;UBERON:0004141!1.16e-07!24;UBERON:0003084!1.16e-07!24;UBERON:0007005!1.16e-07!24;UBERON:0004139!1.16e-07!24;UBERON:0004291!1.16e-07!24;UBERON:0007100!1.44e-07!27;UBERON:0001981!1.68e-07!60;UBERON:0007500!1.68e-07!60;UBERON:0004537!1.68e-07!60;UBERON:0006965!1.68e-07!60;UBERON:0002619!1.74e-07!22;UBERON:0002049!2.39e-07!79;UBERON:0007798!2.39e-07!79;UBERON:0000486!2.82e-07!82;UBERON:0001950!3.04e-07!20;UBERON:0003104!5.88e-07!238;UBERON:0009142!5.88e-07!238
|ontology_enrichment_uberon=UBERON:0000481!2.66e-26!347;UBERON:0000475!8.77e-26!365;UBERON:0000025!4.81e-24!194;UBERON:0000477!1.63e-23!286;UBERON:0004111!5.25e-21!241;UBERON:0000073!1.06e-20!94;UBERON:0001016!1.06e-20!94;UBERON:0005743!1.29e-20!86;UBERON:0000119!2.61e-20!312;UBERON:0000483!8.74e-20!309;UBERON:0001017!1.40e-19!82;UBERON:0003075!2.58e-18!86;UBERON:0007284!2.58e-18!86;UBERON:0002616!4.69e-18!59;UBERON:0000955!4.39e-17!69;UBERON:0006238!4.39e-17!69;UBERON:0001049!7.00e-17!57;UBERON:0005068!7.00e-17!57;UBERON:0006241!7.00e-17!57;UBERON:0007135!7.00e-17!57;UBERON:0002346!8.31e-17!90;UBERON:0000033!8.40e-17!123;UBERON:0000153!2.78e-16!129;UBERON:0007811!2.78e-16!129;UBERON:0007023!5.71e-14!115;UBERON:0003056!1.20e-13!61;UBERON:0000468!1.96e-13!659;UBERON:0004121!3.72e-13!169;UBERON:0002385!5.70e-13!63;UBERON:0001015!5.70e-13!63;UBERON:0000383!5.70e-13!63;UBERON:0003080!6.99e-13!42;UBERON:0001134!1.20e-12!61;UBERON:0002036!1.20e-12!61;UBERON:0003082!1.20e-12!61;UBERON:0002780!1.22e-12!41;UBERON:0001890!1.22e-12!41;UBERON:0006240!1.22e-12!41;UBERON:0001637!1.87e-12!42;UBERON:0003509!1.87e-12!42;UBERON:0004572!1.87e-12!42;UBERON:0000924!2.10e-12!173;UBERON:0006601!2.10e-12!173;UBERON:0004573!3.80e-12!33;UBERON:0004571!3.80e-12!33;UBERON:0000922!1.10e-11!612;UBERON:0005256!1.24e-11!143;UBERON:0000914!1.51e-11!83;UBERON:0002329!1.51e-11!83;UBERON:0003077!1.51e-11!83;UBERON:0003059!1.51e-11!83;UBERON:0007282!1.51e-11!83;UBERON:0009618!1.51e-11!83;UBERON:0007285!1.51e-11!83;UBERON:0002020!4.49e-11!34;UBERON:0003528!4.49e-11!34;UBERON:0001893!5.87e-11!34;UBERON:0001869!9.92e-11!32;UBERON:0002100!1.00e-10!216;UBERON:0003914!1.19e-10!118;UBERON:0002791!1.35e-10!33;UBERON:0004290!2.55e-10!70;UBERON:0000467!3.80e-10!625;UBERON:0000480!5.88e-10!626;UBERON:0002050!6.01e-10!605;UBERON:0005423!6.01e-10!605;UBERON:0003103!6.69e-10!69;UBERON:0004872!8.00e-10!84;UBERON:0000923!1.02e-09!604;UBERON:0005291!1.02e-09!604;UBERON:0006598!1.02e-09!604;UBERON:0002532!1.02e-09!604;UBERON:0000956!2.18e-08!25;UBERON:0000203!2.18e-08!25;UBERON:0000062!3.20e-08!511;UBERON:0000064!5.14e-08!219;UBERON:0000948!1.16e-07!24;UBERON:0005498!1.16e-07!24;UBERON:0004140!1.16e-07!24;UBERON:0009881!1.16e-07!24;UBERON:0004141!1.16e-07!24;UBERON:0003084!1.16e-07!24;UBERON:0007005!1.16e-07!24;UBERON:0004139!1.16e-07!24;UBERON:0004291!1.16e-07!24;UBERON:0007100!1.44e-07!27;UBERON:0001981!1.68e-07!60;UBERON:0007500!1.68e-07!60;UBERON:0004537!1.68e-07!60;UBERON:0006965!1.68e-07!60;UBERON:0002619!1.74e-07!22;UBERON:0002049!2.39e-07!79;UBERON:0007798!2.39e-07!79;UBERON:0000486!2.82e-07!82;UBERON:0001950!3.04e-07!20;UBERON:0003104!5.88e-07!238;UBERON:0009142!5.88e-07!238
|tf_chipseq_enrich=TAF1#6872;5:3.34304628574529:0.00239460009087031:0.0135542593295975!TBP#6908;5:3.70677068709639:0.00142875510672112:0.00920188422489191
|tfbs_overrepresentation=0.23317,0.00474847,2.27448e-06,0.078254,0.310241,0.000302269,0.0706464,4.52886e-06,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,2.95229e-07,0.0132401,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.0568587,0.182756,0.0298713,0.322378,0.108398,0.136785,0.132604,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.0459718,0.00140711,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.0158346,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.000100582,0.0371038,0.0980005,0.139298,0.262613,1.69298e-07,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.0125594,0.0694748,0.0698251,0.00120371,0.00286949,0.0852575,0.104918,0.323505,3.82882e-05,0.102375,0.138802,2.01031e-06,0.153861,0.0777027,0.138224,0.184264,6.17621e-10,0.242703,2.53518e-05,0.0170951,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,3.40199e-07,1.81898e-05,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.0623132,0.222452,0.0101186,0.164723,0.000356829,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,2.96149e-05,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.00237488,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.0699617,0.153706,9.07848e-08,0.00258749,0.00219629,0.183121,0.065826,0.203135,0.0663482,0.463935,0.000380556,0.218835,1.34758e-05,0.000124103,0.00879177,0.145577,0.0268933,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,6.21348e-05,0.11983,0.190123,0.286036,0.0660586,0.134265,0.00422006,0.0157439,3.08621e-05,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.0164904,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.0903603,0.100282,0.0314403,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,4.27407e-06,0.265567,0.258402,0.162511,0.102771,0.165687,0.0275026,0.182806,0.246322,0.0353118,0.120044,0.00161784,0.220536,0.139142,0.0987108,0.09782,0.0543538,0.00945435,0.0687568,0.124225,9.71584e-07,0.150448,0.0774663,0.0150644,0.00351842,0.331711,0.285222,0.161173,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.000158313,0.187334,0.0344602,0.289141,0.289982,0.157983,0.158078,0.0347274,0.172268,0.00669013,0.113261,3.15356e-06,0.000186096,0.0416746,0.0363385,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.00236636,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.182534,1.19888e-05,0.0451674,0.0907735,0.401202,0.00975252,0.000567099,0.0318717,0.000325206,0.0918284,0.00343837,0.0445658,0.460217,0.675971,0.487888,0.205616,0.486439,0.00202871,0.215112,0.410803,0.43779,0.215646,2.34909e-08,0.000136719,0.0675907,3.08227e-05,0.528152,0.284119,0.234606,0.176507,0.488132,4.68298e-06,0.0148976,0.00864509,0.277796,6.02113e-10,0.132079,0.706516,0.537972,4.20428e-05,2.50566e-06,0.385794,0.00231215,0.450485,0.665656,0.470142,0.344006,0.688397,0.0205505,0.000279833,0.00049104,1.989e-05,0.0207023,0.260795,0.174433,0.00233032,0.0209497,0.00502963,0.251384,0.541742,0.420673,0.0740284,0.285074,1.00528e-05,1.14718e-08,0.0833105,0.00226045,0.0108583,0.046785,9.6011e-06,0.0409646,0.00211301,0.80581,0.688223,5.85088e-07,0.0085689,0.379008,2.43333e-05,1.60902e-05,0.0362804,0.109234,0.00735779,0.288602,9.28582e-11,8.40301e-06,0.000137033,2.99248e-09,0.000136926,0.379957,1.49791e-06,0.000565505,0.337121,0.464864,0.00429812,0.0740433,0.121457,0.00984135,7.19158e-11,0.436555,2.96297e-05,0.115972,0.15612,0.294103,0.0201591,6.10881e-06,0.00360254,0.418989,3.81597e-08,0.606622,0.350461,0.495024,0.307173,0.246694,3.11315e-11,0.231945,0.00540405,0.00245348,0.122916,0.00643729,0.00520975,0.229501,0.230597,0.195392,1.56795e-07,0.0182796,0.0206727,0.0855214,0.241286,0.0764074,0.00205974,0.393543,0.214395,0.0133432,0.732038,0.0029698,0.019185,0.504398,0.456725,0.0239402,0.00494219,0.000210947,0.0017197,0.427794,0.398041,0.524026,0.347879,0.58021,0.00233834,0.529253,0.279717,0.000162001,0.00714192,0.00178136,2.48914e-06,0.0165193,0.407113,0.152579,1.4588e-12,0.423517,0.224914,0.0826665,0.00841554,0.251608,8.28529e-06,0.539805,0.356278,0.295455,0.144104,0.0972855,0.352039,0.00670178,0.508875,0.141052,0.512109,0.000128839,0.214417,0.0300273,0.0870485,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.0673703,0.315824,7.12272e-05,0.0172924,2.04814e-06,0.179502,2.90915e-05,0.0715061,0.023355,0.201779,0.214491,0.171725,0.100099,0.102448,1.8138e-07,0.029672,1.02748e-09,0.0182061,0.200188,0.0762646,0.0391282,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,2.66999e-05,2.07935e-06,0.338195,0.490571,0.304235,0.210475,0.294266,0.0790025,0.310539,0.0577178,4.23155e-06,0.275452,0.288155,0.0389599,0.141761,0.153627,0.0186891,0.342497,0.171961,0.000237632,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.000197089,0.129414,0.157037,0.0349321,0.197279,0.146467,0.0912686,0.000273998,0.0351178,0.00207043,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,1.07113e-09,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,8.76486e-07,0.00398358,0.312064,0.080156,0.274185,0.180885,0.0545112,0.510703,1.45969e-08,0.0649137,0.0974216,1.11614e-17,0.00146285,0.174786,0.176557,0.396547,0.0472148,0.383224,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.0489921,0.208788,0.0104864,0.0757402,0.430936,0.000347023,2.00655e-05,0.00922288,7.19012e-08,6.21585e-07,0.233835,0.00226547,0.262929,0.0270029,0.143824,0.460679,0.11021,0.0775891,0.0123649,0.257945,0.211515,0.125701,1.65515e-09,0.204954,0.209341,0.000898851,0.000572102,0.084895,3.36066e-05,0.0819954,0.10091,0.122658,0.0120484,0.228398,0.056055,0.120552,0.41771,0.00824561,2.74122e-06,0.335207,0.111864,0.190688,0.299739,0.000365706,1.36799e-06,0.0940982,0.0780533,0.0103603,0.0993772,0.274769,0.120547,0.11602,0.067657,0.436413,0.0585992,0.00157918,0.000341918,8.40657e-05,0.0940748,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.000666983,0.122767,0.0749261,0.176858,0.114361,0.0094733,1.09243e-05,0.0620267,0.211111,0.0738743,0.0882327,0.00118464,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.430769,0.240825,0.0515122,0.000853249,0.00083068,6.55242e-05,0.27134,0.00560965,0.239667,0.10226,0.000493542,0.235147,0.689826,0.245965,0.116923,0.148426,0.0983658,0.00240651,0.238223,0.156976,0.244789,0.267391,0.301441,0.000125416,0.350528,0.382904,0.0199219,0.190404,0.135865,0.488841,0.0011505,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.0141192,0.166736,0.181253,0.0422294,0.263877,0.146486,0.000817768,0.262486,0.294204,0.131936,0.288826,0.000213876,0.463617,5.56138e-07,0.0965376,0.377203,0.000369305,0.336564,0.35463,0.00204488,1.10216e-06,0.0594155,0.000315574,0.208795,0.0713793,0.212621,0.228454,0.0429502,0.629713,0.581874,0.00108978,1.49574e-07,0.00315172,0.0432366,0.000398335,7.96054e-05,0.306963,0.569605,0.526495,0.0119447,0.550495,0.0162156,0.0962478,0.24322,4.27108e-07,0.200159,0.00576733,0.111362,0.00330321,8.1656e-08,0.000969861,5.98832e-05,0.349068,4.10924e-05,1.68577e-08,0.557035,0.427789,0.114323,0.0469865,3.2131e-06,0.433702,0.258394,0.0869065,0.432123,0.759415,0.000136211,0.149969,0.651196,0.00172442,0.626931,0.0118613,4.27038e-07,0.000219181,0.00010556,1.28147e-07,0.254547,3.16512e-05,0.51445,3.27733e-06,1.62685e-07,1.76132e-05,3.10456e-06,0.660884,0.000326252,2.25758e-08,3.54241e-07,0.315485,0.311289,0.318577,0.4488,0.389888,0.236714,0.511254,0.193221,0.246387,0.000141508,0.00218041,0.155054,0.466978,0.00665694,0.257848,0.353942,0.192234,0.427276,0.0133812,0.466967,0.283682,0.0187101,4.68516e-07,0.474058,0.218352,0.00804138,0.0281446,0.000100616,0.498956,1.11152e-07,0.0498097,0.000294225,0.932831,0.0101726,0.34194,0.592696,0.592314,0.644904,9.79587e-08,0.0587619,0.317485,0.633504,0.220564,0.00312136,0.262394,0.307462,0.135076,4.70771e-06,0.0251525,0.00434256,0.000667335,1.76083e-05,0.0369687,0.0123142,0.00756664,7.85702e-06,0.0512684,0.528646,0.361524,0.31558,0.412744,0.54408,0.259136,0.0367094,0.415367,0.00182035,0.124718,0.36864,0.538745,0.456862,0.453004,0.0289228,0.557093,0.000229824,0.382214,0.048225,0.271769,0.68995,0.000885649,0.117434,0.306231,0.298354,0.646049,3.30908e-05,4.33202e-05,0.00407641,0.426239,0.401917,0.656093,0.572661,0.412586,0.534679,0.0172799,0.55475,0.0962475,0.523749,0.000745777,0.307426,1.37665e-09,0.196912,0.0310988,4.97255e-05,0.000377546,0.0897597,1.72379e-07,0.276338,0.126433,2.17889e-05,0.318174,0.0555558,0.00553063,0.000170953,0.000461533,0.116969,0.401231,3.02909e-08,0.00565432,0.256708,0.000872261,0.00733321,0.145568,0.153833,0.261242,0.0854897,0.00878877,2.98089e-09,1.48593e-11,0.627637,0.0046687,0.000518233,0.340343,0.343265,0.501812,4.65372e-05,0.336254,2.55898e-06,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.00179898,0.32256,1.05259e-05,0.342366,0.109684,0.322704,0.403482,5.68657e-05,0.00247802,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.162482,0.0327199,0.192188,0.158985,0.174153,0.0972854,0.333309,0.00319971,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.00169859,0.238377,0.000834518,0.197875,0.287909,2.92062e-05,0.117618,0.392533,0.0148293,0.316002,0.330317,0.321404,0.225079,0.300542,4.3878e-08,0.185715,5.61064e-06,0.0122731,0.271405,0.0544127,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,3.2218e-11,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.000851458,0.13327,0.0552906,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.0919467,0.000745809,0.0478203,0.00113333,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.00695007,0.442567,0.430541,0.159424,0.224871,0.0150771,0.000160964,0.0542381,0.349611,0.000367311,0.0863731,0.278202,0.426488,0.000191558,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.00457903,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.0189008,0.380826,0.259046,0.000955184,0.151046,0.483953,8.25228e-05,0.321735,0.15463,0.13907,0.470121,0.0400826,0.250466,0.00212259,0.115686,0.00210052,0.162633,0.342661,0.0420678,0.0337021,0.00819438,0.0858973,0.000669985,0.00721116
|tfbs_overrepresentation=0.23317,0.00474847,2.27448e-06,0.078254,0.310241,0.000302269,0.0706464,4.52886e-06,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,2.95229e-07,0.0132401,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.0568587,0.182756,0.0298713,0.322378,0.108398,0.136785,0.132604,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.0459718,0.00140711,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.0158346,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.000100582,0.0371038,0.0980005,0.139298,0.262613,1.69298e-07,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.0125594,0.0694748,0.0698251,0.00120371,0.00286949,0.0852575,0.104918,0.323505,3.82882e-05,0.102375,0.138802,2.01031e-06,0.153861,0.0777027,0.138224,0.184264,6.17621e-10,0.242703,2.53518e-05,0.0170951,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,3.40199e-07,1.81898e-05,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.0623132,0.222452,0.0101186,0.164723,0.000356829,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,2.96149e-05,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.00237488,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.0699617,0.153706,9.07848e-08,0.00258749,0.00219629,0.183121,0.065826,0.203135,0.0663482,0.463935,0.000380556,0.218835,1.34758e-05,0.000124103,0.00879177,0.145577,0.0268933,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,6.21348e-05,0.11983,0.190123,0.286036,0.0660586,0.134265,0.00422006,0.0157439,3.08621e-05,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.0164904,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.0903603,0.100282,0.0314403,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,4.27407e-06,0.265567,0.258402,0.162511,0.102771,0.165687,0.0275026,0.182806,0.246322,0.0353118,0.120044,0.00161784,0.220536,0.139142,0.0987108,0.09782,0.0543538,0.00945435,0.0687568,0.124225,9.71584e-07,0.150448,0.0774663,0.0150644,0.00351842,0.331711,0.285222,0.161173,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.000158313,0.187334,0.0344602,0.289141,0.289982,0.157983,0.158078,0.0347274,0.172268,0.00669013,0.113261,3.15356e-06,0.000186096,0.0416746,0.0363385,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.00236636,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.182534,1.19888e-05,0.0451674,0.0907735,0.401202,0.00975252,0.000567099,0.0318717,0.000325206,0.0918284,0.00343837,0.0445658,0.460217,0.675971,0.487888,0.205616,0.486439,0.00202871,0.215112,0.410803,0.43779,0.215646,2.34909e-08,0.000136719,0.0675907,3.08227e-05,0.528152,0.284119,0.234606,0.176507,0.488132,4.68298e-06,0.0148976,0.00864509,0.277796,6.02113e-10,0.132079,0.706516,0.537972,4.20428e-05,2.50566e-06,0.385794,0.00231215,0.450485,0.665656,0.470142,0.344006,0.688397,0.0205505,0.000279833,0.00049104,1.989e-05,0.0207023,0.260795,0.174433,0.00233032,0.0209497,0.00502963,0.251384,0.541742,0.420673,0.0740284,0.285074,1.00528e-05,1.14718e-08,0.0833105,0.00226045,0.0108583,0.046785,9.6011e-06,0.0409646,0.00211301,0.80581,0.688223,5.85088e-07,0.0085689,0.379008,2.43333e-05,1.60902e-05,0.0362804,0.109234,0.00735779,0.288602,9.28582e-11,8.40301e-06,0.000137033,2.99248e-09,0.000136926,0.379957,1.49791e-06,0.000565505,0.337121,0.464864,0.00429812,0.0740433,0.121457,0.00984135,7.19158e-11,0.436555,2.96297e-05,0.115972,0.15612,0.294103,0.0201591,6.10881e-06,0.00360254,0.418989,3.81597e-08,0.606622,0.350461,0.495024,0.307173,0.246694,3.11315e-11,0.231945,0.00540405,0.00245348,0.122916,0.00643729,0.00520975,0.229501,0.230597,0.195392,1.56795e-07,0.0182796,0.0206727,0.0855214,0.241286,0.0764074,0.00205974,0.393543,0.214395,0.0133432,0.732038,0.0029698,0.019185,0.504398,0.456725,0.0239402,0.00494219,0.000210947,0.0017197,0.427794,0.398041,0.524026,0.347879,0.58021,0.00233834,0.529253,0.279717,0.000162001,0.00714192,0.00178136,2.48914e-06,0.0165193,0.407113,0.152579,1.4588e-12,0.423517,0.224914,0.0826665,0.00841554,0.251608,8.28529e-06,0.539805,0.356278,0.295455,0.144104,0.0972855,0.352039,0.00670178,0.508875,0.141052,0.512109,0.000128839,0.214417,0.0300273,0.0870485,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.0673703,0.315824,7.12272e-05,0.0172924,2.04814e-06,0.179502,2.90915e-05,0.0715061,0.023355,0.201779,0.214491,0.171725,0.100099,0.102448,1.8138e-07,0.029672,1.02748e-09,0.0182061,0.200188,0.0762646,0.0391282,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,2.66999e-05,2.07935e-06,0.338195,0.490571,0.304235,0.210475,0.294266,0.0790025,0.310539,0.0577178,4.23155e-06,0.275452,0.288155,0.0389599,0.141761,0.153627,0.0186891,0.342497,0.171961,0.000237632,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.000197089,0.129414,0.157037,0.0349321,0.197279,0.146467,0.0912686,0.000273998,0.0351178,0.00207043,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,1.07113e-09,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,8.76486e-07,0.00398358,0.312064,0.080156,0.274185,0.180885,0.0545112,0.510703,1.45969e-08,0.0649137,0.0974216,1.11614e-17,0.00146285,0.174786,0.176557,0.396547,0.0472148,0.383224,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.0489921,0.208788,0.0104864,0.0757402,0.430936,0.000347023,2.00655e-05,0.00922288,7.19012e-08,6.21585e-07,0.233835,0.00226547,0.262929,0.0270029,0.143824,0.460679,0.11021,0.0775891,0.0123649,0.257945,0.211515,0.125701,1.65515e-09,0.204954,0.209341,0.000898851,0.000572102,0.084895,3.36066e-05,0.0819954,0.10091,0.122658,0.0120484,0.228398,0.056055,0.120552,0.41771,0.00824561,2.74122e-06,0.335207,0.111864,0.190688,0.299739,0.000365706,1.36799e-06,0.0940982,0.0780533,0.0103603,0.0993772,0.274769,0.120547,0.11602,0.067657,0.436413,0.0585992,0.00157918,0.000341918,8.40657e-05,0.0940748,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.000666983,0.122767,0.0749261,0.176858,0.114361,0.0094733,1.09243e-05,0.0620267,0.211111,0.0738743,0.0882327,0.00118464,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.430769,0.240825,0.0515122,0.000853249,0.00083068,6.55242e-05,0.27134,0.00560965,0.239667,0.10226,0.000493542,0.235147,0.689826,0.245965,0.116923,0.148426,0.0983658,0.00240651,0.238223,0.156976,0.244789,0.267391,0.301441,0.000125416,0.350528,0.382904,0.0199219,0.190404,0.135865,0.488841,0.0011505,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.0141192,0.166736,0.181253,0.0422294,0.263877,0.146486,0.000817768,0.262486,0.294204,0.131936,0.288826,0.000213876,0.463617,5.56138e-07,0.0965376,0.377203,0.000369305,0.336564,0.35463,0.00204488,1.10216e-06,0.0594155,0.000315574,0.208795,0.0713793,0.212621,0.228454,0.0429502,0.629713,0.581874,0.00108978,1.49574e-07,0.00315172,0.0432366,0.000398335,7.96054e-05,0.306963,0.569605,0.526495,0.0119447,0.550495,0.0162156,0.0962478,0.24322,4.27108e-07,0.200159,0.00576733,0.111362,0.00330321,8.1656e-08,0.000969861,5.98832e-05,0.349068,4.10924e-05,1.68577e-08,0.557035,0.427789,0.114323,0.0469865,3.2131e-06,0.433702,0.258394,0.0869065,0.432123,0.759415,0.000136211,0.149969,0.651196,0.00172442,0.626931,0.0118613,4.27038e-07,0.000219181,0.00010556,1.28147e-07,0.254547,3.16512e-05,0.51445,3.27733e-06,1.62685e-07,1.76132e-05,3.10456e-06,0.660884,0.000326252,2.25758e-08,3.54241e-07,0.315485,0.311289,0.318577,0.4488,0.389888,0.236714,0.511254,0.193221,0.246387,0.000141508,0.00218041,0.155054,0.466978,0.00665694,0.257848,0.353942,0.192234,0.427276,0.0133812,0.466967,0.283682,0.0187101,4.68516e-07,0.474058,0.218352,0.00804138,0.0281446,0.000100616,0.498956,1.11152e-07,0.0498097,0.000294225,0.932831,0.0101726,0.34194,0.592696,0.592314,0.644904,9.79587e-08,0.0587619,0.317485,0.633504,0.220564,0.00312136,0.262394,0.307462,0.135076,4.70771e-06,0.0251525,0.00434256,0.000667335,1.76083e-05,0.0369687,0.0123142,0.00756664,7.85702e-06,0.0512684,0.528646,0.361524,0.31558,0.412744,0.54408,0.259136,0.0367094,0.415367,0.00182035,0.124718,0.36864,0.538745,0.456862,0.453004,0.0289228,0.557093,0.000229824,0.382214,0.048225,0.271769,0.68995,0.000885649,0.117434,0.306231,0.298354,0.646049,3.30908e-05,4.33202e-05,0.00407641,0.426239,0.401917,0.656093,0.572661,0.412586,0.534679,0.0172799,0.55475,0.0962475,0.523749,0.000745777,0.307426,1.37665e-09,0.196912,0.0310988,4.97255e-05,0.000377546,0.0897597,1.72379e-07,0.276338,0.126433,2.17889e-05,0.318174,0.0555558,0.00553063,0.000170953,0.000461533,0.116969,0.401231,3.02909e-08,0.00565432,0.256708,0.000872261,0.00733321,0.145568,0.153833,0.261242,0.0854897,0.00878877,2.98089e-09,1.48593e-11,0.627637,0.0046687,0.000518233,0.340343,0.343265,0.501812,4.65372e-05,0.336254,2.55898e-06,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.00179898,0.32256,1.05259e-05,0.342366,0.109684,0.322704,0.403482,5.68657e-05,0.00247802,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.162482,0.0327199,0.192188,0.158985,0.174153,0.0972854,0.333309,0.00319971,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.00169859,0.238377,0.000834518,0.197875,0.287909,2.92062e-05,0.117618,0.392533,0.0148293,0.316002,0.330317,0.321404,0.225079,0.300542,4.3878e-08,0.185715,5.61064e-06,0.0122731,0.271405,0.0544127,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,3.2218e-11,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.000851458,0.13327,0.0552906,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.0919467,0.000745809,0.0478203,0.00113333,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.00695007,0.442567,0.430541,0.159424,0.224871,0.0150771,0.000160964,0.0542381,0.349611,0.000367311,0.0863731,0.278202,0.426488,0.000191558,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.00457903,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.0189008,0.380826,0.259046,0.000955184,0.151046,0.483953,8.25228e-05,0.321735,0.15463,0.13907,0.470121,0.0400826,0.250466,0.00212259,0.115686,0.00210052,0.162633,0.342661,0.0420678,0.0337021,0.00819438,0.0858973,0.000669985,0.00721116
}}
}}

Revision as of 12:41, 5 September 2012


Full id: C1958_mesodermal_Lens_Smooth_Ciliary_Fibroblast_teratocarcinoma_leiomyoma



Phase1 CAGE Peaks

Hg19::chr5:31193785..31193810,+p2@CDH6
Hg19::chr5:31193820..31193841,+p3@CDH6
Hg19::chr5:31193847..31193887,+p1@CDH6
Hg19::chr5:31193890..31193901,+p4@CDH6
Hg19::chr5:31194106..31194136,+p@chr5:31194106..31194136
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
multi-tissue structure2.66e-26347
organism subdivision8.77e-26365
tube4.81e-24194
anatomical cluster1.63e-23286
anatomical conduit5.25e-21241
regional part of nervous system1.06e-2094
nervous system1.06e-2094
cell layer2.61e-20312
epithelium8.74e-20309
central nervous system1.40e-1982
neural plate2.58e-1886
presumptive neural plate2.58e-1886
regional part of brain4.69e-1859
brain4.39e-1769
future brain4.39e-1769
neural tube7.00e-1757
neural rod7.00e-1757
future spinal cord7.00e-1757
neural keel7.00e-1757
neurectoderm8.31e-1790
head8.40e-17123
anterior region of body2.78e-16129
craniocervical region2.78e-16129
adult organism5.71e-14115
pre-chordal neural plate1.20e-1361
multi-cellular organism1.96e-13659
ectoderm-derived structure3.72e-13169
muscle tissue5.70e-1363
musculature5.70e-1363
musculature of body5.70e-1363
anterior neural tube6.99e-1342
skeletal muscle tissue1.20e-1261
striated muscle tissue1.20e-1261
myotome1.20e-1261
regional part of forebrain1.22e-1241
forebrain1.22e-1241
future forebrain1.22e-1241
artery1.87e-1242
arterial blood vessel1.87e-1242
arterial system1.87e-1242
ectoderm2.10e-12173
presumptive ectoderm2.10e-12173
systemic artery3.80e-1233
systemic arterial system3.80e-1233
embryo1.10e-11612
trunk mesenchyme1.24e-11143
somite1.51e-1183
paraxial mesoderm1.51e-1183
presomitic mesoderm1.51e-1183
presumptive segmental plate1.51e-1183
trunk paraxial mesoderm1.51e-1183
presumptive paraxial mesoderm1.51e-1183
gray matter4.49e-1134
brain grey matter4.49e-1134
telencephalon5.87e-1134
cerebral hemisphere9.92e-1132
trunk1.00e-10216
epithelial tube1.19e-10118
regional part of telencephalon1.35e-1033
dermomyotome2.55e-1070
anatomical system3.80e-10625
anatomical group5.88e-10626
embryonic structure6.01e-10605
developing anatomical structure6.01e-10605
compound organ6.69e-1069
splanchnic layer of lateral plate mesoderm8.00e-1084
germ layer1.02e-09604
embryonic tissue1.02e-09604
presumptive structure1.02e-09604
epiblast (generic)1.02e-09604
cerebral cortex2.18e-0825
pallium2.18e-0825
organ3.20e-08511
organ part5.14e-08219
heart1.16e-0724
primitive heart tube1.16e-0724
primary heart field1.16e-0724
anterior lateral plate mesoderm1.16e-0724
heart tube1.16e-0724
heart primordium1.16e-0724
cardiac mesoderm1.16e-0724
cardiogenic plate1.16e-0724
heart rudiment1.16e-0724
primary circulatory organ1.44e-0727
blood vessel1.68e-0760
epithelial tube open at both ends1.68e-0760
blood vasculature1.68e-0760


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
TAF1#687253.343046285745290.002394600090870310.0135542593295975
TBP#690853.706770687096390.001428755106721120.00920188422489191



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C1958&oldid=2131471"