FFCP PHASE1:Hg19::chr5:137774709..137774806,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51308 | |EntrezGene=51308 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17975 | |HGNC=17975 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BRK0,B4DE60,D6RB42 | |UniProt=Q9BRK0,B4DE60,D6RB42 | ||
|association_with_transcript=0bp_to_ENST00000254901,ENST00000464751,ENST00000503379,ENST00000506158,ENST00000507511,NM_016606,uc003lcz.2,uc003lda.2,uc011cyt.1_5end | |association_with_transcript=0bp_to_ENST00000254901,ENST00000464751,ENST00000503379,ENST00000506158,ENST00000507511,NM_016606,uc003lcz.2,uc003lda.2,uc011cyt.1_5end | ||
|cluster_id=chr5:137774709..137774806,+ | |||
|coexpression_cluster_id=C1652 | |coexpression_cluster_id=C1652 | ||
|description=CAGE_peak_1_at_REEP2_5end | |description=CAGE_peak_1_at_REEP2_5end | ||
|id=chr5:137774709..137774806,+ | |id=chr5:137774709..137774806,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000055!1.87e-17!180;CL:0000393!2.62e-10!60;CL:0000211!2.62e-10!60;CL:0000183!1.09e-09!59;CL:0000133!1.90e-09!59;CL:0002321!3.61e-09!248;CL:0000220!7.47e-09!246;CL:0000192!7.88e-09!42;CL:0000514!7.88e-09!42;CL:0000187!3.54e-08!54;CL:0000680!4.01e-08!57;CL:0000056!4.01e-08!57;CL:0000355!4.01e-08!57;CL:0000221!1.44e-07!71 | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.65e-10,61;CL:0000211,1.65e-10,61;CL:0000133,1.55e-09,59;CL:0000192,7.18e-09,43;CL:0000514,7.18e-09,43;CL:0002321,1.29e-08,250;CL:0000187,2.48e-08,55;CL:0000680,2.78e-08,58;CL:0000056,2.78e-08,58;CL:0000355,2.78e-08,58;CL:0000221,7.46e-08,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.53e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001869;6.52e-20;32!UBERON:0003528;1.16e-19;34!UBERON:0002020;1.16e-19;34!UBERON:0001893;1.51e-19;34!UBERON:0002791;1.55e-19;32!UBERON:0002780;4.34e-19;41!UBERON:0001890;4.34e-19;41!UBERON:0000073;7.75e-19;53!UBERON:0002616;7.75e-19;53!UBERON:0000956;1.16e-17;25!UBERON:0000203;1.16e-17;25!UBERON:0002619;4.11e-16;22!UBERON:0000955;9.07e-16;68!UBERON:0001017;4.41e-15;75!UBERON:0001950;7.79e-15;20!UBERON:0001016;4.50e-14;83!UBERON:0002104;2.33e-08;21!UBERON:0004732;2.83e-08;13!UBERON:0000970;4.25e-08;20!UBERON:0004733;4.65e-08;12!UBERON:0002028;4.65e-08;12!UBERON:0011216;5.55e-08;132!UBERON:0010314;6.32e-08;132!UBERON:0001032;1.27e-07;24!UBERON:0004456;1.27e-07;24!UBERON:0000019;1.39e-07;19!UBERON:0000047;1.39e-07;19!UBERON:0004088;1.39e-07;19!UBERON:0010230;1.39e-07;19!UBERON:0000020;2.33e-07;23!UBERON:0001456;9.34e-07;21 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.62e-42!94;UBERON:0001016!1.62e-42!94;UBERON:0005743!1.18e-41!86;UBERON:0002346!4.34e-40!90;UBERON:0001017!7.68e-40!82;UBERON:0003075!5.04e-39!86;UBERON:0007284!5.04e-39!86;UBERON:0000955!3.34e-34!69;UBERON:0006238!3.34e-34!69;UBERON:0001049!9.43e-34!57;UBERON:0005068!9.43e-34!57;UBERON:0006241!9.43e-34!57;UBERON:0007135!9.43e-34!57;UBERON:0000924!1.13e-33!173;UBERON:0006601!1.13e-33!173;UBERON:0002616!1.18e-32!59;UBERON:0004121!1.90e-32!169;UBERON:0000033!1.25e-31!123;UBERON:0003056!1.27e-31!61;UBERON:0000475!2.21e-30!365;UBERON:0000153!3.66e-29!129;UBERON:0007811!3.66e-29!129;UBERON:0000481!3.87e-29!347;UBERON:0000119!1.42e-28!312;UBERON:0000483!4.03e-28!309;UBERON:0002780!9.21e-26!41;UBERON:0001890!9.21e-26!41;UBERON:0006240!9.21e-26!41;UBERON:0003080!1.36e-25!42;UBERON:0002020!4.74e-22!34;UBERON:0003528!4.74e-22!34;UBERON:0001893!7.00e-22!34;UBERON:0001869!3.08e-21!32;UBERON:0002791!3.14e-21!33;UBERON:0000025!7.09e-21!194;UBERON:0000477!1.55e-18!286;UBERON:0004111!1.70e-18!241;UBERON:0000956!3.47e-17!25;UBERON:0000203!3.47e-17!25;UBERON:0002619!1.10e-15!22;UBERON:0000064!1.78e-14!219;UBERON:0001950!1.91e-14!20;UBERON:0000922!8.69e-14!612;UBERON:0000468!4.90e-13!659;UBERON:0002050!2.48e-12!605;UBERON:0005423!2.48e-12!605;UBERON:0000923!3.44e-12!604;UBERON:0005291!3.44e-12!604;UBERON:0006598!3.44e-12!604;UBERON:0002532!3.44e-12!604;UBERON:0000467!1.52e-10!625;UBERON:0000480!1.59e-10!626;UBERON:0003076!3.33e-09!15;UBERON:0003057!3.33e-09!15;UBERON:0007023!5.55e-09!115;UBERON:0000914!9.09e-09!83;UBERON:0002329!9.09e-09!83;UBERON:0003077!9.09e-09!83;UBERON:0003059!9.09e-09!83;UBERON:0007282!9.09e-09!83;UBERON:0009618!9.09e-09!83;UBERON:0007285!9.09e-09!83;UBERON:0002104!3.28e-08!21;UBERON:0004732!4.58e-08!13;UBERON:0005256!4.61e-08!143;UBERON:0000970!5.70e-08!20;UBERON:0004290!6.01e-08!70;UBERON:0004733!7.16e-08!12;UBERON:0002028!7.16e-08!12;UBERON:0007277!7.16e-08!12;UBERON:0001134!1.34e-07!61;UBERON:0002036!1.34e-07!61;UBERON:0003082!1.34e-07!61;UBERON:0002385!1.36e-07!63;UBERON:0001015!1.36e-07!63;UBERON:0000383!1.36e-07!63;UBERON:0000019!1.81e-07!19;UBERON:0000047!1.81e-07!19;UBERON:0004088!1.81e-07!19;UBERON:0003072!1.81e-07!19;UBERON:0003071!1.81e-07!19;UBERON:0004128!1.81e-07!19;UBERON:0001032!1.85e-07!24;UBERON:0004456!1.85e-07!24;UBERON:0000486!2.27e-07!82;UBERON:0000020!3.27e-07!23;UBERON:0001456!8.14e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.52e-20;32!UBERON:0003528;1.16e-19;34!UBERON:0002020;1.16e-19;34!UBERON:0001893;1.51e-19;34!UBERON:0002791;1.55e-19;32!UBERON:0002780;4.34e-19;41!UBERON:0001890;4.34e-19;41!UBERON:0000073;7.75e-19;53!UBERON:0002616;7.75e-19;53!UBERON:0000956;1.16e-17;25!UBERON:0000203;1.16e-17;25!UBERON:0002619;4.11e-16;22!UBERON:0000955;9.07e-16;68!UBERON:0001017;4.41e-15;75!UBERON:0001950;7.79e-15;20!UBERON:0001016;4.50e-14;83!UBERON:0002104;2.33e-08;21!UBERON:0004732;2.83e-08;13!UBERON:0000970;4.25e-08;20!UBERON:0004733;4.65e-08;12!UBERON:0002028;4.65e-08;12!UBERON:0011216;5.55e-08;132!UBERON:0010314;6.32e-08;132!UBERON:0001032;1.27e-07;24!UBERON:0004456;1.27e-07;24!UBERON:0000019;1.39e-07;19!UBERON:0000047;1.39e-07;19!UBERON:0004088;1.39e-07;19!UBERON:0010230;1.39e-07;19!UBERON:0000020;2.33e-07;23!UBERON:0001456;9.34e-07;21 | |||
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| ||
|short_description=p1@REEP2 | |short_description=p1@REEP2 | ||
}} | }} |
Latest revision as of 22:27, 24 September 2015
Short description: | p1@REEP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_REEP2_5end |
Coexpression cluster: | C1652_normal_brain_cerebellum_occipital_postcentral_temporal_amygdala |
Association with transcript: | 0bp_to_ENST00000254901, ENST00000464751, ENST00000503379, ENST00000506158, ENST00000507511, NM_016606, uc003lcz.2, uc003lda.2, uc011cyt.1_5end |
EntrezGene: | REEP2 |
HGNC: | 17975 |
UniProt: | Q9BRK0B4DE60D6RB42 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.65e-10 | 61 |
electrically active cell | 1.65e-10 | 61 |
neurectodermal cell | 1.55e-09 | 59 |
smooth muscle cell | 7.18e-09 | 43 |
smooth muscle myoblast | 7.18e-09 | 43 |
embryonic cell | 1.29e-08 | 250 |
muscle cell | 2.48e-08 | 55 |
muscle precursor cell | 2.78e-08 | 58 |
myoblast | 2.78e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.78e-08 | 58 |
ectodermal cell | 7.46e-08 | 72 |