FFCP PHASE1:Hg19::chr12:49582837..49582875,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:49582837..49582875,-
|short_description=p1@TUBA1A
|description=CAGE_peak_1_at_TUBA1A_5end
|association_with_transcript=0bp_to_ENST00000546918,ENST00000547...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7846 | |EntrezGene=7846 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20766 | |HGNC=20766 | ||
|TSSclassifier=strong | |||
|UniProt=F8W0F6,F8VQQ4,F8VYI2,F8VXZ4,F8VXB8,F8VWX4,F8VRZ4,Q71U36 | |UniProt=F8W0F6,F8VQQ4,F8VYI2,F8VXZ4,F8VXB8,F8VWX4,F8VRZ4,Q71U36 | ||
|association_with_transcript=0bp_to_ENST00000546918,ENST00000547939,ENST00000548302,ENST00000548405,ENST00000552250,ENST00000552597,ENST00000552924,NM_006009,uc001rtp.2,uc001rtq.2,uc001rtr.2,uc009zlg.2_5end | |||
|cluster_id=chr12:49582837..49582875,- | |||
|coexpression_cluster_id=C3284 | |||
|description=CAGE_peak_1_at_TUBA1A_5end | |||
|id=chr12:49582837..49582875,- | |||
|ontology_enrichment_celltype=CL:0000055!1.42e-24!180;CL:0000183!1.36e-17!59;CL:0000222!1.69e-17!119;CL:0000393!2.58e-16!60;CL:0000211!2.58e-16!60;CL:0000192!5.27e-16!42;CL:0000514!5.27e-16!42;CL:0000680!5.71e-16!57;CL:0000056!5.71e-16!57;CL:0000355!5.71e-16!57;CL:0000187!1.30e-15!54;CL:0000359!1.52e-12!32;CL:0000220!4.32e-09!246;CL:0002321!6.05e-09!248;CL:0000057!1.59e-07!75;CL:0002139!1.73e-07!24;CL:0000115!2.26e-07!35;CL:0000133!5.07e-07!59;CL:0002371!5.96e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.12e-12;32!CL:0000192;1.14e-11;43!CL:0000187;8.13e-09;55!CL:0000393;3.09e-08;61!CL:0000211;3.09e-08;61!CL:0002139;1.72e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.76e-18,121;CL:0000393,1.54e-16,61;CL:0000211,1.54e-16,61;CL:0000192,3.31e-16,43;CL:0000514,3.31e-16,43;CL:0000680,3.43e-16,58;CL:0000056,3.43e-16,58;CL:0000355,3.43e-16,58;CL:0000187,7.86e-16,55;CL:0000359,1.52e-12,32;CL:0002321,2.84e-09,250;CL:0000115,1.38e-07,36;CL:0000057,1.50e-07,76;CL:0002139,1.73e-07,24;CL:0000133,5.12e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000514;1.14e-11;43!CL:0000355;1.02e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.73e-22!312;UBERON:0005743!1.25e-21!86;UBERON:0000483!1.27e-21!309;UBERON:0000073!2.99e-21!94;UBERON:0001016!2.99e-21!94;UBERON:0001017!3.87e-21!82;UBERON:0000025!5.35e-20!194;UBERON:0002049!5.89e-20!79;UBERON:0007798!5.89e-20!79;UBERON:0000955!9.99e-18!69;UBERON:0006238!9.99e-18!69;UBERON:0001049!3.01e-17!57;UBERON:0005068!3.01e-17!57;UBERON:0006241!3.01e-17!57;UBERON:0007135!3.01e-17!57;UBERON:0002616!1.05e-16!59;UBERON:0003075!1.76e-16!86;UBERON:0007284!1.76e-16!86;UBERON:0000914!4.19e-16!83;UBERON:0002329!4.19e-16!83;UBERON:0003077!4.19e-16!83;UBERON:0003059!4.19e-16!83;UBERON:0007282!4.19e-16!83;UBERON:0009618!4.19e-16!83;UBERON:0007285!4.19e-16!83;UBERON:0004535!4.66e-16!110;UBERON:0000475!5.98e-16!365;UBERON:0000055!7.22e-16!69;UBERON:0002346!2.69e-15!90;UBERON:0001981!6.66e-15!60;UBERON:0007500!6.66e-15!60;UBERON:0004537!6.66e-15!60;UBERON:0006965!6.66e-15!60;UBERON:0004111!7.17e-15!241;UBERON:0001009!7.64e-15!113;UBERON:0004290!1.54e-14!70;UBERON:0001134!2.70e-14!61;UBERON:0002036!2.70e-14!61;UBERON:0003082!2.70e-14!61;UBERON:0001637!6.19e-14!42;UBERON:0003509!6.19e-14!42;UBERON:0004572!6.19e-14!42;UBERON:0002385!1.05e-13!63;UBERON:0001015!1.05e-13!63;UBERON:0000383!1.05e-13!63;UBERON:0004121!1.12e-13!169;UBERON:0000033!1.44e-13!123;UBERON:0000924!4.77e-13!173;UBERON:0006601!4.77e-13!173;UBERON:0003056!6.06e-13!61;UBERON:0000153!1.89e-12!129;UBERON:0007811!1.89e-12!129;UBERON:0000486!2.06e-12!82;UBERON:0000468!2.34e-12!659;UBERON:0000477!4.94e-12!286;UBERON:0004872!5.13e-12!84;UBERON:0002780!7.67e-12!41;UBERON:0001890!7.67e-12!41;UBERON:0006240!7.67e-12!41;UBERON:0001893!1.38e-11!34;UBERON:0000467!1.39e-11!625;UBERON:0002020!2.44e-11!34;UBERON:0003528!2.44e-11!34;UBERON:0000480!2.52e-11!626;UBERON:0003080!3.45e-11!42;UBERON:0002791!4.20e-11!33;UBERON:0001869!1.36e-10!32;UBERON:0004573!2.22e-10!33;UBERON:0004571!2.22e-10!33;UBERON:0005256!9.60e-10!143;UBERON:0003914!1.32e-09!118;UBERON:0000922!2.63e-09!612;UBERON:0002050!5.47e-09!605;UBERON:0005423!5.47e-09!605;UBERON:0000923!5.75e-09!604;UBERON:0005291!5.75e-09!604;UBERON:0006598!5.75e-09!604;UBERON:0002532!5.75e-09!604;UBERON:0000956!1.89e-08!25;UBERON:0000203!1.89e-08!25;UBERON:0003076!1.15e-07!15;UBERON:0003057!1.15e-07!15;UBERON:0000947!3.04e-07!21;UBERON:0010191!3.04e-07!21;UBERON:0000490!6.22e-07!138;UBERON:0002619!7.03e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.90e-10;42!UBERON:0003509;2.90e-10;42!UBERON:0004572;2.90e-10;42!UBERON:0001893;2.98e-10;34!UBERON:0007500;4.21e-10;56!UBERON:0001981;4.21e-10;56!UBERON:0004537;4.21e-10;56!UBERON:0003528;4.85e-10;34!UBERON:0002020;4.85e-10;34!UBERON:0001869;8.62e-10;32!UBERON:0002791;9.73e-10;32!UBERON:0000073;1.30e-09;53!UBERON:0002616;1.30e-09;53!UBERON:0004573;1.85e-09;33!UBERON:0004571;1.85e-09;33!UBERON:0002049;2.26e-09;75!UBERON:0007798;2.26e-09;75!UBERON:0003914;2.55e-09;74!UBERON:0001017;7.71e-09;75!UBERON:0000055;8.84e-09;65!UBERON:0002780;1.00e-08;41!UBERON:0001890;1.00e-08;41!UBERON:0000955;1.83e-08;68!UBERON:0000956;1.90e-08;25!UBERON:0000203;1.90e-08;25!UBERON:0001016;8.65e-08;83!UBERON:0000947;3.06e-07;21!UBERON:0010191;3.06e-07;21!UBERON:0002619;7.04e-07;22 | |||
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| ||
|short_description=p1@TUBA1A | |||
}} | }} |
Latest revision as of 15:58, 18 September 2015
Short description: | p1@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBA1A_5end |
Coexpression cluster: | C3284_Neurons_Neural_brain_duodenum_occipital_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000546918, ENST00000547939, ENST00000548302, ENST00000548405, ENST00000552250, ENST00000552597, ENST00000552924, NM_006009, uc001rtp.2, uc001rtq.2, uc001rtr.2, uc009zlg.2_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | F8W0F6F8VQQ4F8VYI2F8VXZ4F8VXB8F8VWX4F8VRZ4Q71U36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.76e-18 | 121 |
electrically responsive cell | 1.54e-16 | 61 |
electrically active cell | 1.54e-16 | 61 |
smooth muscle cell | 3.31e-16 | 43 |
smooth muscle myoblast | 3.31e-16 | 43 |
muscle precursor cell | 3.43e-16 | 58 |
myoblast | 3.43e-16 | 58 |
multi-potent skeletal muscle stem cell | 3.43e-16 | 58 |
muscle cell | 7.86e-16 | 55 |
vascular associated smooth muscle cell | 1.52e-12 | 32 |
embryonic cell | 2.84e-09 | 250 |
endothelial cell | 1.38e-07 | 36 |
fibroblast | 1.50e-07 | 76 |
endothelial cell of vascular tree | 1.73e-07 | 24 |
neurectodermal cell | 5.12e-07 | 59 |