Personal tools

Coexpression cluster:C3628: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!1.26e-57!115;UBERON:0001017!7.70e-53!82;UBERON:0005743!3.34e-52!86;UBERON:0001049!7.54e-51!57;UBERON:0005068!7.54e-51!57;UBERON:0006241!7.54e-51!57;UBERON:0007135!7.54e-51!57;UBERON:0000073!1.08e-49!94;UBERON:0001016!1.08e-49!94;UBERON:0000955!1.33e-48!69;UBERON:0006238!1.33e-48!69;UBERON:0002616!2.29e-48!59;UBERON:0002346!1.66e-44!90;UBERON:0003075!5.98e-44!86;UBERON:0007284!5.98e-44!86;UBERON:0003080!9.97e-38!42;UBERON:0002780!3.55e-37!41;UBERON:0001890!3.55e-37!41;UBERON:0006240!3.55e-37!41;UBERON:0000153!9.48e-36!129;UBERON:0007811!9.48e-36!129;UBERON:0000033!7.09e-35!123;UBERON:0003056!1.76e-33!61;UBERON:0000924!7.43e-33!173;UBERON:0006601!7.43e-33!173;UBERON:0004121!6.07e-32!169;UBERON:0001893!3.01e-31!34;UBERON:0002020!4.15e-31!34;UBERON:0003528!4.15e-31!34;UBERON:0002791!2.70e-30!33;UBERON:0001869!2.07e-29!32;UBERON:0002619!9.70e-23!22;UBERON:0000956!6.15e-22!25;UBERON:0000203!6.15e-22!25;UBERON:0001950!8.10e-21!20;UBERON:0003076!8.41e-14!15;UBERON:0003057!8.41e-14!15;UBERON:0004732!6.02e-12!13;UBERON:0000922!1.27e-11!612;UBERON:0004733!3.48e-11!12;UBERON:0002028!3.48e-11!12;UBERON:0007277!3.48e-11!12;UBERON:0002420!7.63e-11!9;UBERON:0007245!7.63e-11!9;UBERON:0010009!7.63e-11!9;UBERON:0010011!7.63e-11!9;UBERON:0000454!7.63e-11!9;UBERON:0002308!1.19e-10!9;UBERON:0000125!1.19e-10!9;UBERON:0000062!2.97e-10!511;UBERON:0000475!1.44e-09!365;UBERON:0000064!2.80e-09!219;UBERON:0002050!3.47e-09!605;UBERON:0005423!3.47e-09!605;UBERON:0000481!3.88e-09!347;UBERON:0001871!5.36e-09!7;UBERON:0009663!5.79e-09!7;UBERON:0000923!7.97e-09!604;UBERON:0005291!7.97e-09!604;UBERON:0006598!7.97e-09!604;UBERON:0002532!7.97e-09!604;UBERON:0000477!1.07e-08!286;UBERON:0000468!1.46e-08!659;UBERON:0002298!1.97e-08!8;UBERON:0002680!3.06e-08!9;UBERON:0001895!3.06e-08!9;UBERON:0010092!3.06e-08!9;UBERON:0004111!1.34e-07!241;UBERON:0000200!2.02e-07!6;UBERON:0000025!2.23e-07!194;UBERON:0001894!2.90e-07!7;UBERON:0006222!2.90e-07!7;UBERON:0000119!6.01e-07!312
|ontology_enrichment_uberon=UBERON:0007023!1.82e-63!114;UBERON:0001049!3.20e-58!56;UBERON:0005068!3.20e-58!56;UBERON:0006241!3.20e-58!56;UBERON:0007135!3.20e-58!56;UBERON:0001017!3.03e-56!81;UBERON:0000073!7.72e-55!53;UBERON:0002616!7.72e-55!53;UBERON:0000955!7.92e-54!68;UBERON:0006238!7.92e-54!68;UBERON:0001016!2.98e-50!89;UBERON:0003075!1.90e-49!82;UBERON:0007284!1.90e-49!82;UBERON:0002346!4.67e-49!86;UBERON:0002780!5.41e-42!41;UBERON:0001890!5.41e-42!41;UBERON:0003080!5.41e-42!41;UBERON:0006240!5.41e-42!41;UBERON:0010371!5.78e-37!104;UBERON:0003056!4.18e-36!61;UBERON:0001893!6.60e-35!34;UBERON:0003528!1.04e-34!34;UBERON:0002020!1.04e-34!34;UBERON:0001869!1.21e-32!32;UBERON:0002791!1.29e-32!32;UBERON:0004121!2.40e-32!171;UBERON:0000924!2.40e-32!171;UBERON:0006601!2.40e-32!171;UBERON:0010314!2.34e-28!132;UBERON:0002619!6.38e-28!22;UBERON:0011216!6.71e-28!223;UBERON:0001950!1.37e-25!20;UBERON:0000956!1.08e-23!25;UBERON:0000203!1.08e-23!25;UBERON:0003076!9.42e-17!15;UBERON:0003057!9.42e-17!15;UBERON:0000477!5.83e-15!373;UBERON:0004732!9.59e-15!13;UBERON:0004733!1.24e-13!12;UBERON:0002028!1.24e-13!12;UBERON:0007277!1.24e-13!12;UBERON:0002420!7.25e-13!9;UBERON:0007245!7.25e-13!9;UBERON:0010009!7.25e-13!9;UBERON:0010011!7.25e-13!9;UBERON:0000454!7.25e-13!9;UBERON:0000125!1.38e-12!9;UBERON:0002308!1.38e-12!9;UBERON:0000481!1.32e-11!342;UBERON:0000062!1.14e-10!503;UBERON:0009663!1.36e-10!7;UBERON:0002680!6.01e-10!9;UBERON:0001895!6.01e-10!9;UBERON:0010092!6.01e-10!9;UBERON:0001871!1.41e-09!6;UBERON:0000025!1.72e-09!192;UBERON:0004111!3.19e-09!240;UBERON:0000064!3.45e-09!218;UBERON:0000922!7.09e-09!592;UBERON:0000200!1.08e-08!6;UBERON:0001894!2.21e-08!7;UBERON:0006222!2.21e-08!7;UBERON:0002298!2.39e-08!6;UBERON:0000349!1.48e-07!5;UBERON:0000468!1.69e-07!656;UBERON:0002021!1.96e-07!5;UBERON:0002050!4.05e-07!564;UBERON:0000369!4.48e-07!4;UBERON:0002435!4.48e-07!4;UBERON:0000204!4.48e-07!4;UBERON:0010082!4.48e-07!4;UBERON:0001872!4.91e-07!5;UBERON:0000923!5.30e-07!560;UBERON:0010316!5.30e-07!560;UBERON:0005291!5.30e-07!560;UBERON:0006598!5.30e-07!560;UBERON:0010317!5.30e-07!560;UBERON:0002532!5.30e-07!560;UBERON:0002037!6.00e-07!6;UBERON:0006215!6.00e-07!6;UBERON:0005423!6.25e-07!581
|tfbs_overrepresentation=0.147255,0.0586687,0.00948065,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.0472875,0.251834,0.064341,0.209032,0.0028047,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,2.72193e-09,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.0259741,0.0409286,0.0669887,0.338096,0.144217,0.0400492,0.0177901,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.0223702,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.00708381,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,4.22512e-06,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.00735999,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.00079124,0.00279739,0.126611,0.138852,0.085973,0.060453,0.059896,0.206862,0.00157828,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.0177645,0.0695582,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0121776,0.0619218,0.0163125,0.0141386,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.000364005,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.0691572,0.0821962,0.20128,0.00879988,0.00690237,0.335423,0.00355277,0.261553,0.0222487,0.0806291,0.053682,0.49143,0.330703,0.395854,0.329568,0.042539,6.32807e-05,0.271958,0.292154,0.0964816,0.39729,0.581713,0.000362379,0.187251,0.0756284,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.0821552,0.463191,0.00436109,0.528324,0.00682286,0.370782,0.415647,0.0297533,0.253571,0.276829,0.301787,0.0291592,0.316882,0.223503,0.0340949,0.0669244,0.283727,0.314747,0.0567394,0.291709,0.448095,0.0563639,0.0175396,0.292835,0.0280875,0.0210941,0.373868,3.31228e-05,0.0694028,0.18237,0.00842079,0.821217,0.000566966,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,7.50812e-05,0.000781971,0.513852,0.000119998,0.00314692,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.0138549,0.00365572,0.581837,0.0021959,0.305671,0.00134729,0.551561,0.448039,0.218623,0.0550136,0.032738,0.0451077,0.0747529,0.229003,0.000112408,4.04707e-05,8.8271e-05,0.294698,0.0671437,0.477304,0.289204,0.327108,2.73928e-05,0.278044,0.229008,0.000288232,0.228096,0.336314,0.19763,0.15631,0.0530502,0.0182254,0.141711,0.420626,0.00654277,0.311758,0.335105,0.144809,0.145539,0.385517,0.001421,0.447325,0.127215,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.00133722,0.293698,0.0450006,0.343734,0.306556,0.305777,0.00257275,0.0340602,0.00696513,0.0450125,0.262537,0.359455,0.226257,0.405955,0.0175765,0.0110128,0.130283,2.84237e-07,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.000188895,0.281425,0.141758,0.00351186,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.257493,0.000983703,0.0081614,0.00966846,0.136757,0.404569,1.21217e-05,0.0186811,0.316179,0.0697683,0.0556835,0.192544,0.0779981,3.32302e-05,0.144322,0.223391,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.00605613,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.00141596,0.346372,0.0499762,0.0828956,0.0666953,0.0177068,0.111277,0.219383,0.332809,0.19559,0.00915124,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.000924948,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.00477066,0.517717,0.137332,0.0145999,0.0656973,0.0241929,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,8.39064e-05,0.0561838,0.0417636,0.0345419,0.0388736,0.0355977,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.00211059,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.0376172,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.011488,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.00864322,0.131452,3.77923e-06,0.00327218,0.051838,0.0993999,2.16924e-05,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.153605,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.0271723,0.0472142,0.0355833,0.125606,0.175094,0.0987169,0.0225581,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.0602373,0.0109522,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.00326415,0.288096,0.00738316,0.0838874,0.331451,0.113145,0.00659775,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.120614,0.407369,0.231447,0.0455669,0.0210947,0.37006,0.42622,0.448797,0.00150618,0.396996,0.36145,0.000207636,0.381071,0.580441,0.000101057,2.24673e-06,5.79979e-05,0.390366,0.48809,0.50058,0.00308025,0.00696618,0.158867,0.0572701,0.227104,0.000951286,0.00310917,0.0867545,0.284625,0.00583062,0.000187838,0.000415039,0.0465139,0.164197,0.462688,0.287881,0.000261949,0.00445792,0.0642229,5.16277e-05,0.258219,0.446557,0.243383,0.000171205,0.0140783,0.000456298,0.319063,0.161598,0.405056,0.00422412,0.00534461,0.0239796,0.37357,0.00106614,0.477353,0.000195013,1.40958e-05,0.185744,0.20342,0.200493,0.20558,0.300504,0.25656,0.107337,0.349197,0.383291,0.156104,0.141318,9.782e-08,0.0961477,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.000219142,0.314429,0.181415,2.54032e-05,0.000180531,0.24884,0.408413,0.516511,0.322213,0.0234043,0.0655189,0.0700181,0.387276,0.522605,0.481611,0.00800402,0.222037,0.416621,0.416292,0.462712,0.00246111,0.0118519,0.204817,0.122646,0.138871,0.308032,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.0628556,0.373557,0.523625,0.408861,0.0768488,0.534741,0.39088,0.363192,0.236011,0.203486,0.0413386,0.375787,0.4466,0.351067,0.275347,0.0830022,0.00618487,0.241132,0.0795725,0.00623664,0.303709,0.0323359,0.0867777,8.48983e-07,0.250964,0.383276,0.0243456,0.0344603,0.220231,6.7973e-08,0.196976,0.191517,0.000467747,0.000387553,0.307334,0.459728,0.283463,0.201728,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,5.52171e-06,0.359231,0.339729,0.0209984,6.15084e-08,0.387069,0.332774,0.52832,0.299887,0.00375452,0.205413,0.17639,0.0779009,0.00446098,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.00651011,0.0257082,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.00112112,0.226869,0.27872,0.0855609,0.000416591,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.00242972,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.00213411,0.0204324,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.0119784,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,0.00140109,2.76891e-11,0.115972,7.17934e-06,0.246105,0.173026,0.200432,0.000508432,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.00162178,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.0012829,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,5.68504e-06,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.00940743,0.0105548,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.0015491,0.28689,0.236464,0.00756988,0.115817,0.00206474,0.0271615,0.11528,0.194982,0.190993,0.0440463,0.283218,0.249955,0.00084829,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,3.24987e-05,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
|tfbs_overrepresentation=0.147255,0.0586687,0.00948065,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.0180778,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.0472875,0.251834,0.064341,0.209032,0.0028047,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,2.72193e-09,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.0259741,0.0409286,0.0669887,0.338096,0.144217,0.0400492,0.0177901,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.0223702,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.00708381,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,4.22512e-06,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.00735999,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.00079124,0.00279739,0.126611,0.138852,0.085973,0.060453,0.059896,0.206862,0.00157828,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.0177645,0.0695582,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0121776,0.0619218,0.0163125,0.0141386,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.000364005,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.0691572,0.0821962,0.20128,0.00879988,0.00690237,0.335423,0.00355277,0.261553,0.0222487,0.0806291,0.053682,0.49143,0.330703,0.395854,0.329568,0.042539,6.32807e-05,0.271958,0.292154,0.0964816,0.39729,0.581713,0.000362379,0.187251,0.0756284,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.0821552,0.463191,0.00436109,0.528324,0.00682286,0.370782,0.415647,0.0297533,0.253571,0.276829,0.301787,0.0291592,0.316882,0.223503,0.0340949,0.0669244,0.283727,0.314747,0.0567394,0.291709,0.448095,0.0563639,0.0175396,0.292835,0.0280875,0.0210941,0.373868,3.31228e-05,0.0694028,0.18237,0.00842079,0.821217,0.000566966,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,7.50812e-05,0.000781971,0.513852,0.000119998,0.00314692,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.0138549,0.00365572,0.581837,0.0021959,0.305671,0.00134729,0.551561,0.448039,0.218623,0.0550136,0.032738,0.0451077,0.0747529,0.229003,0.000112408,4.04707e-05,8.8271e-05,0.294698,0.0671437,0.477304,0.289204,0.327108,2.73928e-05,0.278044,0.229008,0.000288232,0.228096,0.336314,0.19763,0.15631,0.0530502,0.0182254,0.141711,0.420626,0.00654277,0.311758,0.335105,0.144809,0.145539,0.385517,0.001421,0.447325,0.127215,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.00133722,0.293698,0.0450006,0.343734,0.306556,0.305777,0.00257275,0.0340602,0.00696513,0.0450125,0.262537,0.359455,0.226257,0.405955,0.0175765,0.0110128,0.130283,2.84237e-07,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.000188895,0.281425,0.141758,0.00351186,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.257493,0.000983703,0.0081614,0.00966846,0.136757,0.404569,1.21217e-05,0.0186811,0.316179,0.0697683,0.0556835,0.192544,0.0779981,3.32302e-05,0.144322,0.223391,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.00605613,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.00141596,0.346372,0.0499762,0.0828956,0.0666953,0.0177068,0.111277,0.219383,0.332809,0.19559,0.00915124,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.000924948,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.00477066,0.517717,0.137332,0.0145999,0.0656973,0.0241929,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,8.39064e-05,0.0561838,0.0417636,0.0345419,0.0388736,0.0355977,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.00211059,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.0376172,0.0286025,0.00896808,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.011488,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.00864322,0.131452,3.77923e-06,0.00327218,0.051838,0.0993999,2.16924e-05,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.153605,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.0271723,0.0472142,0.0355833,0.125606,0.175094,0.0987169,0.0225581,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.0457643,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.0602373,0.0109522,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.00326415,0.288096,0.00738316,0.0838874,0.331451,0.113145,0.00659775,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.0062542,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.0743925,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.120614,0.407369,0.231447,0.0455669,0.0210947,0.37006,0.42622,0.448797,0.00150618,0.396996,0.36145,0.000207636,0.381071,0.580441,0.000101057,2.24673e-06,5.79979e-05,0.390366,0.48809,0.50058,0.00308025,0.00696618,0.158867,0.0572701,0.227104,0.000951286,0.00310917,0.0867545,0.284625,0.00583062,0.000187838,0.000415039,0.0465139,0.164197,0.462688,0.287881,0.000261949,0.00445792,0.0642229,5.16277e-05,0.258219,0.446557,0.243383,0.000171205,0.0140783,0.000456298,0.319063,0.161598,0.405056,0.00422412,0.00534461,0.0239796,0.37357,0.00106614,0.477353,0.000195013,1.40958e-05,0.185744,0.20342,0.200493,0.20558,0.300504,0.25656,0.107337,0.349197,0.383291,0.156104,0.141318,9.782e-08,0.0961477,0.314438,0.0720718,0.163828,0.230581,0.120226,0.28424,0.000219142,0.314429,0.181415,2.54032e-05,0.000180531,0.24884,0.408413,0.516511,0.322213,0.0234043,0.0655189,0.0700181,0.387276,0.522605,0.481611,0.00800402,0.222037,0.416621,0.416292,0.462712,0.00246111,0.0118519,0.204817,0.122646,0.138871,0.308032,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.0628556,0.373557,0.523625,0.408861,0.0768488,0.534741,0.39088,0.363192,0.236011,0.203486,0.0413386,0.375787,0.4466,0.351067,0.275347,0.0830022,0.00618487,0.241132,0.0795725,0.00623664,0.303709,0.0323359,0.0867777,8.48983e-07,0.250964,0.383276,0.0243456,0.0344603,0.220231,6.7973e-08,0.196976,0.191517,0.000467747,0.000387553,0.307334,0.459728,0.283463,0.201728,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,5.52171e-06,0.359231,0.339729,0.0209984,6.15084e-08,0.387069,0.332774,0.52832,0.299887,0.00375452,0.205413,0.17639,0.0779009,0.00446098,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.00651011,0.0257082,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.00112112,0.226869,0.27872,0.0855609,0.000416591,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.00242972,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.00213411,0.0204324,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.0119784,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,0.00140109,2.76891e-11,0.115972,7.17934e-06,0.246105,0.173026,0.200432,0.000508432,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.00162178,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.0012829,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,5.68504e-06,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.00940743,0.0105548,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.0015491,0.28689,0.236464,0.00756988,0.115817,0.00206474,0.0271615,0.11528,0.194982,0.190993,0.0440463,0.283218,0.249955,0.00084829,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,3.24987e-05,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
}}
}}

Revision as of 15:16, 19 October 2012


Full id: C3628_caudate_putamen_Pericytes_diencephalon_cerebral_thalamus_ductus



Phase1 CAGE Peaks

Hg19::chr17:37783139..37783148,+p6@PPP1R1B
Hg19::chr17:37783170..37783182,+p2@PPP1R1B
Hg19::chr17:37783186..37783195,+p5@PPP1R1B


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
adult organism1.82e-63114
neural tube3.20e-5856
neural rod3.20e-5856
future spinal cord3.20e-5856
neural keel3.20e-5856
central nervous system3.03e-5681
regional part of nervous system7.72e-5553
regional part of brain7.72e-5553
brain7.92e-5468
future brain7.92e-5468
nervous system2.98e-5089
neural plate1.90e-4982
presumptive neural plate1.90e-4982
neurectoderm4.67e-4986
regional part of forebrain5.41e-4241
forebrain5.41e-4241
anterior neural tube5.41e-4241
future forebrain5.41e-4241
ecto-epithelium5.78e-37104
pre-chordal neural plate4.18e-3661
telencephalon6.60e-3534
brain grey matter1.04e-3434
gray matter1.04e-3434
cerebral hemisphere1.21e-3232
regional part of telencephalon1.29e-3232
ectoderm-derived structure2.40e-32171
ectoderm2.40e-32171
presumptive ectoderm2.40e-32171
structure with developmental contribution from neural crest2.34e-28132
regional part of cerebral cortex6.38e-2822
organ system subdivision6.71e-28223
neocortex1.37e-2520
cerebral cortex1.08e-2325
pallium1.08e-2325
posterior neural tube9.42e-1715
chordal neural plate9.42e-1715
anatomical cluster5.83e-15373
segmental subdivision of nervous system9.59e-1513
segmental subdivision of hindbrain1.24e-1312
hindbrain1.24e-1312
presumptive hindbrain1.24e-1312
basal ganglion7.25e-139
nuclear complex of neuraxis7.25e-139
aggregate regional part of brain7.25e-139
collection of basal ganglia7.25e-139
cerebral subcortex7.25e-139
neural nucleus1.38e-129
nucleus of brain1.38e-129
multi-tissue structure1.32e-11342
organ1.14e-10503
telencephalic nucleus1.36e-107
regional part of metencephalon6.01e-109
metencephalon6.01e-109
future metencephalon6.01e-109
temporal lobe1.41e-096
tube1.72e-09192
anatomical conduit3.19e-09240
organ part3.45e-09218
embryo7.09e-09592
gyrus1.08e-086
diencephalon2.21e-087
future diencephalon2.21e-087
brainstem2.39e-086
limbic system1.48e-075
multi-cellular organism1.69e-07656
occipital lobe1.96e-075
embryonic structure4.05e-07564
corpus striatum4.48e-074
striatum4.48e-074
ventral part of telencephalon4.48e-074
future corpus striatum4.48e-074
parietal lobe4.91e-075
germ layer5.30e-07560
germ layer / neural crest5.30e-07560
embryonic tissue5.30e-07560
presumptive structure5.30e-07560
germ layer / neural crest derived structure5.30e-07560
epiblast (generic)5.30e-07560
cerebellum6.00e-076
rhombic lip6.00e-076
developing anatomical structure6.25e-07581


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.