FFCP PHASE1:Hg19::chr14:57277178..57277203,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8522 | |||
|TSSclassifier=strong | |||
|UniProt=F1T0D1,F1T0C9,G3V3J3,P32243 | |||
|association_with_transcript=0bp_to_ENST00000339475,ENST00000554559,ENST00000555804,NM_021728,uc001xcq.2_5end | |||
|coexpression_cluster_id=C535 | |||
|description=CAGE_peak_1_at_OTX2_5end | |||
|id=chr14:57277178..57277203,- | |||
|ontology_enrichment_celltype=CL:0002319!1.88e-18!25;CL:0000133!3.07e-17!59;CL:0000047!3.33e-17!8;CL:0000221!2.68e-13!71;CL:0000540!3.47e-13!6;CL:0000031!3.47e-13!6;CL:0000404!3.47e-13!6;CL:0002322!5.14e-13!5;CL:0000128!1.24e-11!7;CL:0000126!1.24e-11!7;CL:0000127!1.24e-11!7;CL:0002453!1.24e-11!7;CL:0002586!7.15e-09!3;CL:0000147!3.60e-08!14;CL:0000243!6.30e-08!15;CL:0000125!6.30e-08!15;CL:0000030!6.30e-08!15;CL:0000339!6.30e-08!15;CL:0000333!1.05e-07!41;CL:0002605!1.09e-07!3;CL:0002603!1.12e-07!3;CL:0000095!6.14e-07!17;CL:0000123!6.14e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.16e-19;5!CL:0002586;4.13e-13;3!CL:0000147;5.76e-13;14!CL:0002319;5.35e-12;25!CL:0000149;6.18e-10;4!CL:0002321;9.10e-09;15!CL:0000128;1.18e-08;7!CL:0000126;1.18e-08;7!CL:0000127;1.18e-08;7!CL:0002549;3.31e-08;2!CL:0000047;4.29e-08;2!CL:0000243;1.22e-07;15!CL:0000125;1.22e-07;15!CL:0000095;9.10e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.13e-19,5;CL:0002586,4.05e-13,3;CL:0000147,5.60e-13,14;CL:0002319,5.25e-12,25;CL:0000133,5.80e-12,59;CL:0000149,6.09e-10,4;CL:0000221,3.08e-09,72;CL:0000128,1.14e-08,7;CL:0000126,1.14e-08,7;CL:0000127,1.14e-08,7;CL:0002453,1.14e-08,7;CL:0000333,1.56e-08,41;CL:0002549,3.77e-08,2;CL:0000243,1.19e-07,15;CL:0000125,1.19e-07,15;CL:0000030,1.19e-07,15;CL:0000339,1.19e-07,15;CL:0000047,2.32e-07,8;CL:0000095,8.95e-07,17;CL:0000123,8.95e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.71e-12;3!CL:0000339;1.22e-07;15!CL:0000133;4.64e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!8.73e-77!86;UBERON:0000073!1.70e-73!94;UBERON:0001016!1.70e-73!94;UBERON:0001017!4.46e-68!82;UBERON:0000955!8.34e-53!69;UBERON:0006238!8.34e-53!69;UBERON:0002616!3.40e-49!59;UBERON:0001049!3.60e-48!57;UBERON:0005068!3.60e-48!57;UBERON:0006241!3.60e-48!57;UBERON:0007135!3.60e-48!57;UBERON:0002346!5.74e-48!90;UBERON:0003075!7.61e-46!86;UBERON:0007284!7.61e-46!86;UBERON:0000924!1.84e-39!173;UBERON:0006601!1.84e-39!173;UBERON:0004121!2.00e-37!169;UBERON:0000033!1.78e-34!123;UBERON:0000153!8.85e-34!129;UBERON:0007811!8.85e-34!129;UBERON:0003056!2.08e-30!61;UBERON:0002780!1.03e-27!41;UBERON:0001890!1.03e-27!41;UBERON:0006240!1.03e-27!41;UBERON:0003080!6.66e-27!42;UBERON:0004733!9.65e-27!12;UBERON:0002028!9.65e-27!12;UBERON:0007277!9.65e-27!12;UBERON:0004732!1.90e-24!13;UBERON:0003076!3.14e-24!15;UBERON:0003057!3.14e-24!15;UBERON:0002680!5.03e-20!9;UBERON:0001895!5.03e-20!9;UBERON:0010092!5.03e-20!9;UBERON:0002308!1.93e-18!9;UBERON:0000125!1.93e-18!9;UBERON:0001893!3.14e-18!34;UBERON:0002020!3.60e-18!34;UBERON:0003528!3.60e-18!34;UBERON:0007023!2.32e-17!115;UBERON:0002791!6.78e-17!33;UBERON:0001869!3.82e-15!32;UBERON:0009663!1.10e-14!7;UBERON:0002037!1.89e-14!6;UBERON:0006215!1.89e-14!6;UBERON:0002420!1.94e-14!9;UBERON:0007245!1.94e-14!9;UBERON:0010009!1.94e-14!9;UBERON:0010011!1.94e-14!9;UBERON:0000454!1.94e-14!9;UBERON:0002298!6.16e-14!8;UBERON:0000966!9.48e-14!5;UBERON:0005388!9.48e-14!5;UBERON:0001802!9.48e-14!5;UBERON:0001894!8.71e-13!7;UBERON:0006222!8.71e-13!7;UBERON:0000369!6.40e-09!4;UBERON:0002435!6.40e-09!4;UBERON:0000204!6.40e-09!4;UBERON:0010082!6.40e-09!4;UBERON:0001781!7.15e-09!3;UBERON:0001782!7.15e-09!3;UBERON:0005424!7.15e-09!3;UBERON:0000025!1.45e-08!194;UBERON:0001896!2.09e-08!3;UBERON:0005290!2.09e-08!3;UBERON:0010096!2.09e-08!3;UBERON:0006331!1.51e-07!3;UBERON:0000988!2.86e-07!3;UBERON:0005383!3.50e-07!3;UBERON:0005382!3.50e-07!3;UBERON:0000970!5.24e-07!20;UBERON:0000956!8.76e-07!25;UBERON:0000203!8.76e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;7.95e-21;5!UBERON:0005388;7.95e-21;5!UBERON:0001802;7.95e-21;5!UBERON:0001894;1.38e-19;7!UBERON:0004733;2.74e-19;12!UBERON:0002028;2.74e-19;12!UBERON:0000073;1.78e-18;53!UBERON:0002616;1.78e-18;53!UBERON:0004732;1.05e-17;13!UBERON:0002784;1.51e-16;4!UBERON:0000955;8.20e-16;68!UBERON:0002037;9.05e-16;6!UBERON:0001017;9.10e-16;75!UBERON:0001016;2.10e-14;83!UBERON:0001781;4.13e-13;3!UBERON:0001782;4.13e-13;3!UBERON:0001896;2.29e-12;3!UBERON:0005290;2.29e-12;3!UBERON:0002680;2.02e-10;9!UBERON:0001895;2.02e-10;9!UBERON:0003296;1.33e-09;4!UBERON:0010133;1.33e-09;4!UBERON:0001905;1.53e-09;2!UBERON:0002757;1.53e-09;2!UBERON:0010134;1.53e-09;2!UBERON:0005408;1.53e-09;2!UBERON:0001899;1.53e-09;2!UBERON:0002780;1.60e-09;41!UBERON:0001890;1.60e-09;41!UBERON:0000970;3.62e-09;20!UBERON:0001897;9.94e-09;2!UBERON:0010225;9.94e-09;2!UBERON:0002104;1.11e-08;21!UBERON:0005629;3.31e-08;2!UBERON:0005358;3.31e-08;2!UBERON:0001886;3.31e-08;2!UBERON:0004086;3.31e-08;2!UBERON:0005282;3.31e-08;2!UBERON:0005281;3.31e-08;2!UBERON:0000020;7.82e-08;23!UBERON:0001032;1.83e-07;24!UBERON:0004456;1.83e-07;24!UBERON:0000019;3.41e-07;19!UBERON:0000047;3.41e-07;19!UBERON:0004088;3.41e-07;19!UBERON:0010230;3.41e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.89e-36,81;UBERON:0001016,2.68e-34,89;UBERON:0000955,2.40e-30,68;UBERON:0006238,2.40e-30,68;UBERON:0002346,2.83e-30,86;UBERON:0003075,2.60e-27,82;UBERON:0007284,2.60e-27,82;UBERON:0000073,7.04e-26,53;UBERON:0002616,7.04e-26,53;UBERON:0004121,1.83e-24,171;UBERON:0000924,1.83e-24,171;UBERON:0006601,1.83e-24,171;UBERON:0001049,3.06e-24,56;UBERON:0005068,3.06e-24,56;UBERON:0006241,3.06e-24,56;UBERON:0007135,3.06e-24,56;UBERON:0010371,3.53e-20,104;UBERON:0001894,1.48e-19,7;UBERON:0006222,1.48e-19,7;UBERON:0004733,2.60e-19,12;UBERON:0002028,2.60e-19,12;UBERON:0007277,2.60e-19,12;UBERON:0003056,5.90e-18,61;UBERON:0004732,1.01e-17,13;UBERON:0000966,2.62e-17,6;UBERON:0005388,2.62e-17,6;UBERON:0001802,2.62e-17,6;UBERON:0002784,1.45e-16,4;UBERON:0002037,8.77e-16,6;UBERON:0006215,8.77e-16,6;UBERON:0003076,3.50e-15,15;UBERON:0003057,3.50e-15,15;UBERON:0010314,1.53e-14,132;UBERON:0001782,4.05e-13,3;UBERON:0005424,4.05e-13,3;UBERON:0001896,2.20e-12,3;UBERON:0005290,2.20e-12,3;UBERON:0010096,2.20e-12,3;UBERON:0002780,2.20e-12,41;UBERON:0001890,2.20e-12,41;UBERON:0003080,2.20e-12,41;UBERON:0006240,2.20e-12,41;UBERON:0002680,1.98e-10,9;UBERON:0001895,1.98e-10,9;UBERON:0010092,1.98e-10,9;UBERON:0011216,2.44e-10,223;UBERON:0001781,6.09e-10,4;UBERON:0003296,1.47e-09,4;UBERON:0010133,1.47e-09,4;UBERON:0001905,1.53e-09,2;UBERON:0002757,1.53e-09,2;UBERON:0010134,1.53e-09,2;UBERON:0005408,1.53e-09,2;UBERON:0001899,1.53e-09,2;UBERON:0001897,9.57e-09,2;UBERON:0010225,9.57e-09,2;UBERON:0000970,1.10e-08,21;UBERON:0002104,1.10e-08,21;UBERON:0005629,3.77e-08,2;UBERON:0005358,3.77e-08,2;UBERON:0001886,3.77e-08,2;UBERON:0004086,3.77e-08,2;UBERON:0005282,3.77e-08,2;UBERON:0005281,3.77e-08,2;UBERON:0000020,1.82e-07,24;UBERON:0001032,1.82e-07,24;UBERON:0004456,1.82e-07,24;UBERON:0000019,8.45e-07,20;UBERON:0000047,8.45e-07,20;UBERON:0010312,8.45e-07,20;UBERON:0004088,8.45e-07,20;UBERON:0010230,8.45e-07,20;UBERON:0003072,8.45e-07,20;UBERON:0004128,8.45e-07,20;UBERON:0003071,8.45e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80172126499473,0.816002764977012,1.56727360739044,5.72471974262113,5.74872585306114,0.251085279189606,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54072282934794,1.15235184896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4897387271452,32.9999123120498,10.4574548582567,22.9090931583969,11.8590799911545,35.4028038303555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.46291956318061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54094624222463,1.30139853857622,0.773288812777695,4.18790663335872,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,152.074924194019,66.91498772274,127.222952313742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.2873594757476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,19.8356257212208,34.0584120588172,7.09314285488514,7.67848890038904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.48152576085515,0,3.74823113160543,0,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,171.745362993205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67749196501254,0.803765742325096,0.825236619583403,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.92562821219883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,66.5154667000483,32.5022121002977,2.79433813236226,663.243355884291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,2.48830904013189,0,0,0.157265941855896,0,52.7868168157018,0,2.72658681369805,2.23457967189298,0,0,0,0,0,0.256916900385838,0,0,0,0.504143392443436,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0,0,7.11067251723685,0,0,0,0,381.41970714534,567.646923105375,0,1.13831095675649,0,0,0,0.679697329768317,0,0,0,0,0.628462359664008,0,0,0,0,159.46417005812,228.171655342057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,833.678938480589,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,4.73020624399789,0,0.883889372481891,0,0,0,0,0,4.794324143733,76.2673692306595,131.38634554886,0.305966489225945,0,0,0,0,0,12.4375415918817,5.79224776826613,0.213233981900981,0,0,0,0,0.0636471582781649,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@OTX2 | |||
}} |
Revision as of 20:16, 11 January 2014
Short description: | p1@OTX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_OTX2_5end |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | 0bp_to_ENST00000339475, ENST00000554559, ENST00000555804, NM_021728, uc001xcq.2_5end |
EntrezGene: | OTX2 |
HGNC: | 8522 |
UniProt: | F1T0D1F1T0C9G3V3J3P32243 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.13e-19 | 5 |
retinal pigment epithelial cell | 4.05e-13 | 3 |
pigment cell | 5.60e-13 | 14 |
neural cell | 5.25e-12 | 25 |
neurectodermal cell | 5.80e-12 | 59 |
visual pigment cell | 6.09e-10 | 4 |
ectodermal cell | 3.08e-09 | 72 |
oligodendrocyte | 1.14e-08 | 7 |
macroglial cell | 1.14e-08 | 7 |
astrocyte | 1.14e-08 | 7 |
oligodendrocyte precursor cell | 1.14e-08 | 7 |
migratory neural crest cell | 1.56e-08 | 41 |
fibroblast of choroid plexus | 3.77e-08 | 2 |
glial cell (sensu Vertebrata) | 1.19e-07 | 15 |
glial cell | 1.19e-07 | 15 |
glioblast | 1.19e-07 | 15 |
glioblast (sensu Vertebrata) | 1.19e-07 | 15 |
neuronal stem cell | 2.32e-07 | 8 |
neuron associated cell | 8.95e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 8.95e-07 | 17 |