FFCP PHASE1:Hg19::chr9:91793725..91793743,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=53358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18181 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T7I8,Q92529 | |||
|association_with_transcript=-43bp_to_ENST00000375830,ENST00000375835,NM_016848,uc004aqg.2_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_SHC3_5end | |||
|id=chr9:91793725..91793743,- | |||
|ontology_enrichment_celltype=CL:0000192!6.73e-20!42;CL:0000514!6.73e-20!42;CL:0000393!1.43e-19!60;CL:0000211!1.43e-19!60;CL:0000183!8.85e-19!59;CL:0000055!3.25e-18!180;CL:0000187!6.22e-18!54;CL:0000359!4.34e-16!32;CL:0000680!6.94e-16!57;CL:0000056!6.94e-16!57;CL:0000355!6.94e-16!57;CL:0000222!7.88e-08!119;CL:0002539!2.86e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.79e-18;32!CL:0000192;2.67e-16;43!CL:0002539;1.17e-09;10!CL:0000393;3.36e-09;61!CL:0000211;3.36e-09;61!CL:0000187;5.69e-09;55!CL:0002494;4.17e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.26e-22,43;CL:0000514,1.26e-22,43;CL:0000393,2.44e-19,61;CL:0000211,2.44e-19,61;CL:0000359,3.71e-19,32;CL:0000187,7.55e-17,55;CL:0000680,2.64e-15,58;CL:0000056,2.64e-15,58;CL:0000355,2.64e-15,58;CL:0002539,1.19e-09,10;CL:0000222,2.61e-07,121;CL:0002494,3.36e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;2.67e-16;43!CL:0000355;7.68e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.18e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.02e-07,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001869;6.82e-28;32!UBERON:0001893;1.25e-26;34!UBERON:0003528;3.54e-26;34!UBERON:0002020;3.54e-26;34!UBERON:0002791;5.54e-26;32!UBERON:0000956;2.00e-24;25!UBERON:0000203;2.00e-24;25!UBERON:0002619;3.74e-23;22!UBERON:0001950;5.60e-21;20!UBERON:0002780;4.81e-18;41!UBERON:0001890;4.81e-18;41!UBERON:0001637;1.43e-14;42!UBERON:0003509;1.43e-14;42!UBERON:0004572;1.43e-14;42!UBERON:0000073;1.78e-14;53!UBERON:0002616;1.78e-14;53!UBERON:0004573;6.78e-13;33!UBERON:0004571;6.78e-13;33!UBERON:0001017;3.06e-12;75!UBERON:0000955;3.75e-12;68!UBERON:0004237;1.17e-09;10!UBERON:0004695;1.17e-09;10!UBERON:0002111;1.17e-09;10!UBERON:0004178;1.17e-09;10!UBERON:0000947;2.31e-09;21!UBERON:0010191;2.31e-09;21!UBERON:0001016;3.43e-09;83!UBERON:0007500;3.60e-09;56!UBERON:0001981;3.60e-09;56!UBERON:0004537;3.60e-09;56!UBERON:0001135;3.67e-09;15!UBERON:0000200;3.16e-08;6!UBERON:0002420;8.94e-08;9!UBERON:0007245;8.94e-08;9!UBERON:0010009;8.94e-08;9!UBERON:0010011;8.94e-08;9!UBERON:0000454;8.94e-08;9!UBERON:0003914;1.74e-07;74!UBERON:0000349;3.66e-07;5!UBERON:0000125;7.74e-07;9!UBERON:0002308;7.74e-07;9!UBERON:0007625;9.22e-07;11!UBERON:0001871;9.79e-07;6 | |||
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| |||
|short_description=p1@SHC3 | |||
}} |
Revision as of 02:03, 23 January 2014
Short description: | p1@SHC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHC3_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -43bp_to_ENST00000375830, ENST00000375835, NM_016848, uc004aqg.2_5end |
EntrezGene: | SHC3 |
HGNC: | 18181 |
UniProt: | Q5T7I8Q92529 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.26e-22 | 43 |
smooth muscle myoblast | 1.26e-22 | 43 |
electrically responsive cell | 2.44e-19 | 61 |
electrically active cell | 2.44e-19 | 61 |
vascular associated smooth muscle cell | 3.71e-19 | 32 |
muscle cell | 7.55e-17 | 55 |
muscle precursor cell | 2.64e-15 | 58 |
myoblast | 2.64e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.64e-15 | 58 |
aortic smooth muscle cell | 1.19e-09 | 10 |
mesodermal cell | 2.61e-07 | 121 |
cardiocyte | 3.36e-07 | 16 |
Ontology term | p-value | n |
---|