FF:10708-109H6: Difference between revisions

Latest revision as of 14:34, 3 June 2020

Name:	alveolar cell carcinoma cell line:SW 1573
Species:	Human (Homo sapiens)
Library ID:	CNhs11838
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	female
age	44
cell type	pneumocyte
cell line	SW 1573
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005820

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11838		CAGE		DRX007825		DRR008697

Accession ID Hg19

Library id		BAM		CTSS
CNhs11838		DRZ000122		DRZ001507

Accession ID Hg38

Library id		BAM		CTSS
CNhs11838		DRZ011472		DRZ012857

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.255
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.532
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.109
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0779
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	1.276
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.53
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0423
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.147
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.33
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0214
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11838

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0201
MA0003.1	MA0003.1	0.0189
MA0004.1	MA0004.1	0.655
MA0006.1	MA0006.1	0.666
MA0007.1	MA0007.1	0.368
MA0009.1	MA0009.1	0.421
MA0014.1	MA0014.1	0.486
MA0017.1	MA0017.1	0.409
MA0018.2	MA0018.2	0.186
MA0019.1	MA0019.1	0.337
MA0024.1	MA0024.1	2.35471e-6
MA0025.1	MA0025.1	0.772
MA0027.1	MA0027.1	0.807
MA0028.1	MA0028.1	0.0706
MA0029.1	MA0029.1	0.633
MA0030.1	MA0030.1	0.197
MA0031.1	MA0031.1	0.734
MA0035.2	MA0035.2	0.473
MA0038.1	MA0038.1	0.288
MA0039.2	MA0039.2	0.905
MA0040.1	MA0040.1	0.436
MA0041.1	MA0041.1	0.361
MA0042.1	MA0042.1	0.582
MA0043.1	MA0043.1	0.0141
MA0046.1	MA0046.1	0.0912
MA0047.2	MA0047.2	0.918
MA0048.1	MA0048.1	0.00642
MA0050.1	MA0050.1	1.75509e-7
MA0051.1	MA0051.1	1.07786e-5
MA0052.1	MA0052.1	0.0351
MA0055.1	MA0055.1	0.00354
MA0057.1	MA0057.1	0.736
MA0058.1	MA0058.1	0.826
MA0059.1	MA0059.1	0.214
MA0060.1	MA0060.1	0.00237
MA0061.1	MA0061.1	0.0083
MA0062.2	MA0062.2	0.32
MA0065.2	MA0065.2	0.268
MA0066.1	MA0066.1	0.356
MA0067.1	MA0067.1	0.342
MA0068.1	MA0068.1	0.604
MA0069.1	MA0069.1	0.343
MA0070.1	MA0070.1	0.681
MA0071.1	MA0071.1	0.932
MA0072.1	MA0072.1	0.0873
MA0073.1	MA0073.1	0.592
MA0074.1	MA0074.1	0.882
MA0076.1	MA0076.1	0.669
MA0077.1	MA0077.1	0.242
MA0078.1	MA0078.1	0.201
MA0079.2	MA0079.2	0.161
MA0080.2	MA0080.2	9.12134e-11
MA0081.1	MA0081.1	0.0332
MA0083.1	MA0083.1	0.583
MA0084.1	MA0084.1	0.451
MA0087.1	MA0087.1	0.457
MA0088.1	MA0088.1	0.198
MA0090.1	MA0090.1	0.228
MA0091.1	MA0091.1	0.093
MA0092.1	MA0092.1	0.431
MA0093.1	MA0093.1	0.594
MA0099.2	MA0099.2	0.0317
MA0100.1	MA0100.1	0.0076
MA0101.1	MA0101.1	0.0413
MA0102.2	MA0102.2	0.00174
MA0103.1	MA0103.1	0.759
MA0104.2	MA0104.2	0.102
MA0105.1	MA0105.1	0.0211
MA0106.1	MA0106.1	0.683
MA0107.1	MA0107.1	0.00408
MA0108.2	MA0108.2	1.64882e-4
MA0111.1	MA0111.1	0.461
MA0112.2	MA0112.2	0.177
MA0113.1	MA0113.1	0.255
MA0114.1	MA0114.1	0.602
MA0115.1	MA0115.1	0.535
MA0116.1	MA0116.1	0.0557
MA0117.1	MA0117.1	0.634
MA0119.1	MA0119.1	0.622
MA0122.1	MA0122.1	0.186
MA0124.1	MA0124.1	0.361
MA0125.1	MA0125.1	0.997
MA0131.1	MA0131.1	0.22
MA0135.1	MA0135.1	0.312
MA0136.1	MA0136.1	1.082e-8
MA0137.2	MA0137.2	0.0391
MA0138.2	MA0138.2	0.208
MA0139.1	MA0139.1	0.326
MA0140.1	MA0140.1	0.898
MA0141.1	MA0141.1	0.776
MA0142.1	MA0142.1	0.618
MA0143.1	MA0143.1	0.383
MA0144.1	MA0144.1	0.00641
MA0145.1	MA0145.1	0.173
MA0146.1	MA0146.1	0.379
MA0147.1	MA0147.1	0.112
MA0148.1	MA0148.1	0.768
MA0149.1	MA0149.1	0.165
MA0150.1	MA0150.1	0.214
MA0152.1	MA0152.1	0.299
MA0153.1	MA0153.1	0.433
MA0154.1	MA0154.1	0.0222
MA0155.1	MA0155.1	0.014
MA0156.1	MA0156.1	8.38264e-7
MA0157.1	MA0157.1	0.376
MA0159.1	MA0159.1	0.529
MA0160.1	MA0160.1	0.309
MA0162.1	MA0162.1	0.155
MA0163.1	MA0163.1	0.178
MA0164.1	MA0164.1	0.569
MA0258.1	MA0258.1	0.31
MA0259.1	MA0259.1	0.271

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11838

Novel motif	Logo	P-value
1	1	0.702
10	10	0.943
100	100	0.168
101	101	0.529
102	102	0.754
103	103	0.779
104	104	0.505
105	105	0.832
106	106	0.00262
107	107	0.258
108	108	0.546
109	109	0.491
11	11	0.796
110	110	0.82
111	111	0.258
112	112	0.331
113	113	0.682
114	114	0.628
115	115	0.849
116	116	0.967
117	117	0.982
118	118	0.519
119	119	0.344
12	12	0.952
120	120	0.0584
121	121	0.787
122	122	0.589
123	123	0.148
124	124	0.195
125	125	0.223
126	126	0.25
127	127	0.708
128	128	0.0288
129	129	0.998
13	13	0.719
130	130	0.917
131	131	0.29
132	132	0.322
133	133	0.19
134	134	0.968
135	135	0.0139
136	136	0.0808
137	137	0.174
138	138	0.539
139	139	0.629
14	14	0.799
140	140	0.663
141	141	0.801
142	142	0.56
143	143	0.606
144	144	0.949
145	145	0.617
146	146	0.131
147	147	0.229
148	148	0.886
149	149	0.0649
15	15	0.352
150	150	0.973
151	151	0.811
152	152	0.342
153	153	0.106
154	154	0.51
155	155	0.664
156	156	0.491
157	157	0.624
158	158	0.407
159	159	0.307
16	16	0.858
160	160	0.916
161	161	0.274
162	162	0.858
163	163	0.115
164	164	0.331
165	165	0.995
166	166	0.454
167	167	0.0391
168	168	0.0713
169	169	0.932
17	17	0.88
18	18	0.256
19	19	0.691
2	2	0.432
20	20	0.0646
21	21	0.06
22	22	0.261
23	23	0.0603
24	24	0.515
25	25	0.733
26	26	0.148
27	27	0.28
28	28	0.682
29	29	0.609
3	3	0.662
30	30	0.222
31	31	0.207
32	32	0.0168
33	33	0.642
34	34	0.14
35	35	0.909
36	36	0.949
37	37	0.291
38	38	0.471
39	39	0.807
4	4	0.325
40	40	0.269
41	41	0.277
42	42	0.397
43	43	0.223
44	44	0.107
45	45	0.0153
46	46	0.821
47	47	0.619
48	48	0.717
49	49	0.363
5	5	0.0516
50	50	0.932
51	51	0.798
52	52	0.0285
53	53	0.844
54	54	0.92
55	55	0.903
56	56	0.858
57	57	0.13
58	58	0.226
59	59	0.432
6	6	0.221
60	60	0.0442
61	61	0.914
62	62	0.396
63	63	0.944
64	64	0.724
65	65	0.113
66	66	0.16
67	67	0.828
68	68	0.902
69	69	0.643
7	7	0.725
70	70	0.248
71	71	0.934
72	72	0.0027
73	73	0.478
74	74	0.409
75	75	0.663
76	76	0.915
77	77	0.119
78	78	0.437
79	79	0.2
8	8	0.172
80	80	0.525
81	81	0.605
82	82	0.352
83	83	0.805
84	84	0.152
85	85	0.0555
86	86	0.414
87	87	0.955
88	88	0.599
89	89	0.0595
9	9	0.217
90	90	0.267
91	91	0.034
92	92	0.249
93	93	0.362
94	94	0.245
95	95	0.873
96	96	0.984
97	97	0.447
98	98	0.755
99	99	0.24

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11838

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102060 bronchioalveolar carcinoma cell sample
FF:0104802 bronchioloalveolar carcinoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005820
+|accession_numbers=CAGE;DRX007825;DRR008697;DRZ000122;DRZ001507;DRZ011472;DRZ012857
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:46682321..46682362,-!p1@HOXB6!2.13!132.98!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.90!77.85!HOXB8;;chr3:25470156..25470227,+!p2@RARB!1.84!67.62!RARB;;chr17:46622205..46622218,-!p3@HOXB2!1.80!72.17!HOXB2;;chr17:46675558..46675577,-!p2@HOXB6!1.79!61.37!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.60!38.64!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.56!152.58!NR2F1;;chr17:46622229..46622257,-!p6@HOXB2!1.56!41.48!HOXB2;;chr12:66218598..66218645,+!p2@HMGA2!1.49!132.12!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.42!HOXC5;;chr3:12330560..12330579,+!p1@PPARG!1.43!29.55!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.86!ZBED1;;chr11:31832658..31832681,-!p1@PAX6!1.41!24.44!PAX6;;chr17:46622175..46622186,-!p12@HOXB2!1.41!24.44!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!1.40!23.87!HOXB8;;chr17:46621101..46621143,-!p7@HOXB2!1.39!31.25!HOXB2;;chr5:137804484..137804498,+!p2@EGR1!1.35!82.97!EGR1;;chr15:96874145..96874166,+!p7@NR2F2!1.35!40.35!NR2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.34!55.41!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!1.34!26.99!NFATC2;;chr7:27153454..27153469,-!p2@HOXA3!1.34!20.74!HOXA3;;chr5:72744445..72744466,-!p2@FOXD1!1.33!33.53!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!1.31!52.28!OSR1;;chr17:46692318..46692362,-!p5@HOXB8!1.31!19.61!HOXB8;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.32!HOXA9;;chr17:46622070..46622109,-!p1@HOXB2!1.30!41.77!HOXB2;;chr15:96869114..96869160,+!p11@NR2F2!1.30!25.57!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!1.29!83.82!FOXD1;;chr17:46622114..46622138,-!p4@HOXB2!1.29!27.85!HOXB2;;chr17:46621146..46621180,-!p10@HOXB2!1.26!17.05!HOXB2;;chr17:46692287..46692317,-!p7@HOXB8!1.26!17.05!HOXB8;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr5:138609489..138609542,+!p8@MATR3!1.21!15.06!MATR3;;chr6:45390300..45390335,+!p4@RUNX2!1.19!22.45!RUNX2;;chr5:92919100..92919135,+!p3@NR2F1!1.18!17.05!NR2F1;;chr17:46692624..46692659,-!p3@HOXB8!1.18!14.21!HOXB8;;chr15:96874012..96874042,+!p2@NR2F2!1.17!123.60!NR2F2;;chr19:21950332..21950356,-!p2@ZNF100!1.17!29.55!ZNF100;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.15!NR2F2;;chr7:42276787..42276815,-!p1@GLI3!1.15!34.95!GLI3;;chr6:45390077..45390105,+!p9@RUNX2!1.14!16.48!RUNX2;;chr3:128206762..128206781,-!p2@GATA2!1.13!77.00!GATA2;;chr17:46667594..46667619,-!p1@HOXB3!1.13!12.50!HOXB3;;chr11:31832610..31832639,-!p5@PAX6!1.13!12.50!PAX6;;chr5:137804405..137804444,+!p3@EGR1!1.12!14.78!EGR1;;chr2:171571931..171571959,+!p3@SP5!1.12!12.22!SP5;;chr5:92918894..92918912,+!p2@NR2F1!1.11!38.93!NR2F1;;chr8:67525443..67525459,-!p2@MYBL1!1.11!17.62!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!1.11!13.92!FOXD1;;chr7:156803329..156803362,-!p1@MNX1!1.11!11.93!MNX1;;chr17:46688334..46688385,-!p1@HOXB7!1.10!16.76!HOXB7;;chr3:193853927..193853944,+!p1@HES1!1.09!363.69!HES1;;chr7:26191809..26191890,+!p1@NFE2L3!1.09!55.69!NFE2L3;;chr6:45390269..45390298,+!p5@RUNX2!1.09!19.04!RUNX2;;chr17:41623692..41623715,-!p1@ETV4!1.08!46.88!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!1.06!15.63!HOXB4;;chr7:27192185..27192209,-!p1@HOXA3!1.06!10.51!HOXA3;;chr15:96874244..96874259,+!p5@NR2F2!1.05!24.72!NR2F2;;chr13:100634031..100634045,+!p1@ZIC2!1.05!10.23!ZIC2;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.62!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!1.04!25.00!PPARG;;chr9:124991204..124991246,-!p1@LHX6!1.04!9.94!LHX6;;chr7:27183291..27183324,-!p1@HOXA5!1.04!9.94!HOXA5;;chr5:137801160..137801176,+!p1@EGR1!1.03!971.18!EGR1;;chr5:134369905..134369972,-!p1@PITX1!1.03!15.06!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.66!HOXA9;;chr17:46675619..46675642,-!p5@HOXB6!1.03!9.66!HOXB6;;chr15:96869165..96869183,+!p20@NR2F2!1.02!9.38!NR2F2;;chr7:27196267..27196311,-!p1@HOXA7!1.02!9.38!HOXA7;;chr19:45971246..45971265,+!p1@FOSB!1.01!173.32!FOSB;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.78!ZNF680;;chr12:66218443..66218461,+!p8@HMGA2!1.01!11.93!HMGA2;;chr6:35310395..35310410,+!p2@PPARD!1.00!35.80!PPARD;;chr20:2673383..2673441,+!p1@EBF4!1.00!14.49!EBF4;;chr7:27183263..27183284,-!p2@HOXA5!1.00!9.09!HOXA5;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.95!FOSL1;;chr5:150284532..150284549,-!p1@ZNF300!0.99!18.47!ZNF300;;chr20:55204351..55204377,+!p1@TFAP2C!0.99!11.37!TFAP2C;;chr3:141087339..141087387,+!p2@ZBTB38!0.98!90.36!ZBTB38;;chr15:96874063..96874074,+!p10@NR2F2!0.98!15.91!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!0.98!9.94!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.98!8.52!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!0.98!8.52!HOXB9;;chr12:66218183..66218209,+!p4@HMGA2!0.97!16.48!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.97!14.21!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.97!13.07!HMGA2;;chr15:96874216..96874236,+!p13@NR2F2!0.97!13.07!NR2F2;;chr13:100634130..100634143,+!p3@ZIC2!0.97!8.24!ZIC2;;chr5:43067636..43067674,+!p6@ZNF131!0.96!11.08!ZNF131;;chr5:92919375..92919438,+!p6@NR2F1!0.96!8.81!NR2F1;;chr11:65667846..65667868,-!p1@FOSL1!0.95!215.66!FOSL1;;chr12:3068544..3068597,+!p1@TEAD4!0.95!48.59!TEAD4;;chr5:13780435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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/alveolar%2520cell%2520carcinoma%2520cell%2520line%253aSW%25201573.CNhs11838.10708-109H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10708-109H6
 |is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0104802
 |is_obsolete=
+|library_id=CNhs11838
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+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10708
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10708
 |name=alveolar cell carcinoma cell line:SW 1573
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11838,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
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 |rna_box=109
@@ Line 62: / Line 78: @@
 |rna_weight_ug=59.67872
 |sample_age=44
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 |sample_cell_catalog=CRL-2170
 |sample_cell_line=SW 1573
@@ Line 83: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10708-109H6;search_select_hide=table117:FF:10708-109H6
 }}

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FF:10708-109H6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:34, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0