FF:10709-109H7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005844 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007840;DRR008712;DRZ000137;DRZ001522;DRZ011487;DRZ012872 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:3908,DOID:3910,DOID:3904 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:3908,DOID:3910,DOID:3904 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102058,FF:0102057,FF:0102553,FF:0102060,FF:0104802,FF:0102835 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!201.37!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!115.69!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.72!HOPX;;chr1:166958538..166958552,+!p2@MAEL!1.81!63.31!MAEL;;chr14:37131058..37131139,+!p1@PAX9!1.72!51.87!PAX9;;chr3:189349162..189349207,+!p2@TP63!1.65!43.73!TP63;;chr14:36989427..36989442,-!p1@NKX2-1!1.61!39.41!NKX2-1;;chr17:17726907..17726958,-!p2@SREBF1!1.59!223.49!SREBF1;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.02!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.45!850.48!HES1;;chr17:80797886..80797906,-!p1@ZNF750!1.43!26.19!ZNF750;;chr14:36989358..36989378,-!p3@NKX2-1!1.39!23.39!NKX2-1;;chr14:36989940..36989957,-!p2@NKX2-1!1.39!23.39!NKX2-1;;chr11:34642612..34642646,+!p1@EHF!1.37!22.37!EHF;;chr17:70117153..70117174,+!p1@SOX9!1.36!216.88!SOX9;;chr1:166958504..166958525,+!p1@MAEL!1.36!21.87!MAEL;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.61!ZNF727;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.88!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.92!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.05!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!1.23!17.80!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.23!16.02!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.23!16.02!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.87!FOSB;;chr5:137804405..137804444,+!p3@EGR1!1.18!16.78!EGR1;;chr6:126240442..126240459,+!p4@NCOA7!1.13!16.02!NCOA7;;chr2:238592039..238592054,+!p4@LRRFIP1!1.12!12.20!LRRFIP1;;chr14:105935396..105935413,+!p4@MTA1!1.11!11.95!MTA1;;chr5:137804484..137804498,+!p2@EGR1!1.07!43.73!EGR1;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.46!PPARG;;chr14:36989913..36989931,-!p6@NKX2-1!1.07!10.68!NKX2-1;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.26!BMP2;;chr12:52445218..52445237,+!p1@NR4A1!1.05!131.19!NR4A1;;chr14:105935426..105935440,+!p9@MTA1!1.05!10.17!MTA1;;chr1:151804244..151804310,-!p1@RORC!1.04!9.92!RORC;;chr8:102504979..102505010,+!p2@GRHL2!1.04!9.92!GRHL2;;chr10:126138597..126138612,-!p1@NKX1-2!1.02!9.41!NKX1-2;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.41!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!1.01!9.15!ZNF165;;chr14:36989379..36989390,-!p8@NKX2-1!1.01!9.15!NKX2-1;;chr5:92918860..92918871,+!p10@NR2F1!1.00!9.92!NR2F1;;chr15:67418047..67418093,+!p4@SMAD3!0.98!10.93!SMAD3;;chr14:36989892..36989908,-!p9@NKX2-1!0.98!8.64!NKX2-1;;chr13:73633131..73633149,+!p1@KLF5!0.96!88.48!KLF5;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.70!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.14!KDM5D;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.48!SOX4;;chr14:36989336..36989354,-!p5@NKX2-1!0.95!7.88!NKX2-1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.63!ZNF676;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.63!SOX2;;chr5:137801160..137801176,+!p1@EGR1!0.93!768.35!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.92!8.39!SREBF1;;chr15:67418177..67418204,+!p9@SMAD3!0.92!7.37!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.92!7.37!BARX2;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.12!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.86!GRHL2;;chr9:124976154..124976177,-!p5@LHX6!0.90!6.86!LHX6;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.39!NR2F1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.88!67.12!ZNF595;;chr6:10412600..10412637,-!p1@TFAP2A!0.88!11.19!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr2:214015343..214015366,-!p3@IKZF2!0.88!6.61!IKZF2;;chr9:100615499..100615519,+!p1@FOXE1!0.87!6.36!FOXE1;;chr1:24645832..24645853,+!p1@GRHL3!0.87!6.36!GRHL3;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.37!EGR1;;chr1:935467..935484,-!p1@HES4!0.85!28.73!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.73!IRX3;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.10!GRHL3;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.36!SOX4;;chr12:24715376..24715432,-!p1@SOX5!0.83!7.37!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!0.82!157.89!FOSL1;;chr19:21324863..21324874,+!p2@ZNF431!0.82!10.17!ZNF431;;chr10:135122868..135122893,+!p3@ZNF511!0.82!5.59!ZNF511;;chr5:178368186..178368238,+!p1@ZNF454!0.81!10.17!ZNF454;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.64!ZNF385A;;chr6:126240463..126240489,+!p6@NCOA7!0.80!6.10!NCOA7;;chr20:22565370..22565388,-!p2@FOXA2!0.80!5.34!FOXA2;;chr14:36989412..36989423,-!p12@NKX2-1!0.80!5.34!NKX2-1;;chr17:80797863..80797874,-!p2@ZNF750!0.80!5.34!ZNF750;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.61!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr6:21597514..21597578,+!p4@SOX4!0.78!8.90!SOX4;;chr4:1873216..1873238,+!p5@WHSC1!0.78!6.86!WHSC1;;chr13:79177703..79177729,-!p2@POU4F1!0.78!5.09!POU4F1;;chr14:105935576..105935594,+!p11@MTA1!0.78!5.09!MTA1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.09!DLX3;;chr19:2867325..2867348,+!p1@ZNF556!0.78!5.09!ZNF556;;chr19:9609272..9609297,-!p1@ZNF560!0.78!5.09!ZNF560;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.83!ZFY;;chr1:935398..935465,-!p2@HES4!0.76!10.42!HES4;;chr14:75745523..75745537,+!p1@FOS!0.75!617.58!FOS;;chrX:131623044..131623089,-!p1@MBNL3!0.75!20.85!MBNL3;;chr6:10412392..104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| |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!201.37!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!115.69!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.72!HOPX;;chr1:166958538..166958552,+!p2@MAEL!1.81!63.31!MAEL;;chr14:37131058..37131139,+!p1@PAX9!1.72!51.87!PAX9;;chr3:189349162..189349207,+!p2@TP63!1.65!43.73!TP63;;chr14:36989427..36989442,-!p1@NKX2-1!1.61!39.41!NKX2-1;;chr17:17726907..17726958,-!p2@SREBF1!1.59!223.49!SREBF1;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.02!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.45!850.48!HES1;;chr17:80797886..80797906,-!p1@ZNF750!1.43!26.19!ZNF750;;chr14:36989358..36989378,-!p3@NKX2-1!1.39!23.39!NKX2-1;;chr14:36989940..36989957,-!p2@NKX2-1!1.39!23.39!NKX2-1;;chr11:34642612..34642646,+!p1@EHF!1.37!22.37!EHF;;chr17:70117153..70117174,+!p1@SOX9!1.36!216.88!SOX9;;chr1:166958504..166958525,+!p1@MAEL!1.36!21.87!MAEL;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.61!ZNF727;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.88!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.92!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.05!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!1.23!17.80!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.23!16.02!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.23!16.02!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.87!FOSB;;chr5:137804405..137804444,+!p3@EGR1!1.18!16.78!EGR1;;chr6:126240442..126240459,+!p4@NCOA7!1.13!16.02!NCOA7;;chr2:238592039..238592054,+!p4@LRRFIP1!1.12!12.20!LRRFIP1;;chr14:105935396..105935413,+!p4@MTA1!1.11!11.95!MTA1;;chr5:137804484..137804498,+!p2@EGR1!1.07!43.73!EGR1;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.46!PPARG;;chr14:36989913..36989931,-!p6@NKX2-1!1.07!10.68!NKX2-1;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.26!BMP2;;chr12:52445218..52445237,+!p1@NR4A1!1.05!131.19!NR4A1;;chr14:105935426..105935440,+!p9@MTA1!1.05!10.17!MTA1;;chr1:151804244..151804310,-!p1@RORC!1.04!9.92!RORC;;chr8:102504979..102505010,+!p2@GRHL2!1.04!9.92!GRHL2;;chr10:126138597..126138612,-!p1@NKX1-2!1.02!9.41!NKX1-2;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.41!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!1.01!9.15!ZNF165;;chr14:36989379..36989390,-!p8@NKX2-1!1.01!9.15!NKX2-1;;chr5:92918860..92918871,+!p10@NR2F1!1.00!9.92!NR2F1;;chr15:67418047..67418093,+!p4@SMAD3!0.98!10.93!SMAD3;;chr14:36989892..36989908,-!p9@NKX2-1!0.98!8.64!NKX2-1;;chr13:73633131..73633149,+!p1@KLF5!0.96!88.48!KLF5;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.70!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.14!KDM5D;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.48!SOX4;;chr14:36989336..36989354,-!p5@NKX2-1!0.95!7.88!NKX2-1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.63!ZNF676;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.63!SOX2;;chr5:137801160..137801176,+!p1@EGR1!0.93!768.35!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.92!8.39!SREBF1;;chr15:67418177..67418204,+!p9@SMAD3!0.92!7.37!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.92!7.37!BARX2;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.12!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.86!GRHL2;;chr9:124976154..124976177,-!p5@LHX6!0.90!6.86!LHX6;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.39!NR2F1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.88!67.12!ZNF595;;chr6:10412600..10412637,-!p1@TFAP2A!0.88!11.19!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr2:214015343..214015366,-!p3@IKZF2!0.88!6.61!IKZF2;;chr9:100615499..100615519,+!p1@FOXE1!0.87!6.36!FOXE1;;chr1:24645832..24645853,+!p1@GRHL3!0.87!6.36!GRHL3;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.37!EGR1;;chr1:935467..935484,-!p1@HES4!0.85!28.73!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.73!IRX3;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.10!GRHL3;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.36!SOX4;;chr12:24715376..24715432,-!p1@SOX5!0.83!7.37!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!0.82!157.89!FOSL1;;chr19:21324863..21324874,+!p2@ZNF431!0.82!10.17!ZNF431;;chr10:135122868..135122893,+!p3@ZNF511!0.82!5.59!ZNF511;;chr5:178368186..178368238,+!p1@ZNF454!0.81!10.17!ZNF454;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.64!ZNF385A;;chr6:126240463..126240489,+!p6@NCOA7!0.80!6.10!NCOA7;;chr20:22565370..22565388,-!p2@FOXA2!0.80!5.34!FOXA2;;chr14:36989412..36989423,-!p12@NKX2-1!0.80!5.34!NKX2-1;;chr17:80797863..80797874,-!p2@ZNF750!0.80!5.34!ZNF750;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.61!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr6:21597514..21597578,+!p4@SOX4!0.78!8.90!SOX4;;chr4:1873216..1873238,+!p5@WHSC1!0.78!6.86!WHSC1;;chr13:79177703..79177729,-!p2@POU4F1!0.78!5.09!POU4F1;;chr14:105935576..105935594,+!p11@MTA1!0.78!5.09!MTA1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.09!DLX3;;chr19:2867325..2867348,+!p1@ZNF556!0.78!5.09!ZNF556;;chr19:9609272..9609297,-!p1@ZNF560!0.78!5.09!ZNF560;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.83!ZFY;;chr1:935398..935465,-!p2@HES4!0.76!10.42!HES4;;chr14:75745523..75745537,+!p1@FOS!0.75!617.58!FOS;;chrX:131623044..131623089,-!p1@MBNL3!0.75!20.85!MBNL3;;chr6:10412392..104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| ||
|ffid_belonging_in_development=CL:0000223,UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10709-109H7 | |id=FF:10709-109H7 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0102835;;FF:0104802 | ||
|is_obsolete= | |||
|library_id=CNhs11840 | |||
|library_id_phase_based=2:CNhs11840 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10709 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10709 | |||
|name=bronchioalveolar carcinoma cell line:NCI-H358 | |name=bronchioalveolar carcinoma cell line:NCI-H358 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11840,LSID829,release010,COMPLETED | |profile_hcage=CNhs11840,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.341244235760327,0.0552283302961358,0,0,0,0.0858753912580107,0.098385373642144,0.0273469098888959,0.123871728745455,0,0,0,0,0,0,0,0,0,0,0,0.098385373642144,0,0.290686720662593,0,0,0,0.22200486550551,0,0.148235525076339,0,0,0.223311840456075,0,0,0,0,0,0,0,0,0,0,0.482019756528171,0,0.0575114589623937,0.098385373642144,0,0,0,0,0,0,0,0.243192902170426,0,0,0,0,0,0,0,0.347017369768416,0,0,0.0010417464290471,0,0,0,0,0,0,0,0,0.098385373642144,0,0,0,0,0,0,0,0,0,0.049192686821072,0,0,0.0233423549169759,0,0.00828120168015102,0.0195053497120241,0.049192686821072,0,0,0.0732574446895075,-0.112812029053725,0,0,0,0,-0.0980353512377064,0.26387393833961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50222134443341,0.30470904208241,0,0,0.0412927489019677,-0.0551557150535202,0.098385373642144,0,0.098385373642144,0,0,0.0209227453144175 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.098385373642144,0,0,0,0.098385373642144,0,0,0,0,0.360388063904249,0.049192686821072,-0.169377176669599,0.102678278820925,0,0,-0.137076521824413,0.098385373642144,0,0,0,0.098385373642144,0,0,0.098385373642144,0,-0.128119866952565,0,0.0479728220528291,0,0,0,0,0.117802828944228,0.575946375280162,0,0.0477468043560007,-0.0683442610773682,0,0,0,0,-0.0578702504963343,0,0.32313024721728,0.0958272480081662,0.52475523549059,-0.014982033022479,0.101812614686287,0,0,0,-0.525981104273427,0.249812839031169,0,0,0.15367137996153,-0.132156931739587,0,0,-0.391044581551635,0,-0.15500526002433,0.0379456317452737,0,0.435931321911453,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.148441180347385,0,0.178547416331584,0.30470904208241,0.0425537155934179,0.007054941725952,0.098385373642144,0.078509274438616,0.37308066763683,0.131283743231312,-0.0435910043215955,0.123863669430832,0,-0.302389727009913,-0.0257155065668782,-0.379759368600442,0.189319457604928,-0.147401849371139,0.0562117017945494,0,-0.102603083046836,0.0803892386424793,0.109944750339349,0.0195053497120241,0.0177541531400747,-0.164015741945477,0.356746337526186,0,0.098385373642144,0,0.262680174348325,0,0,-0.0877635753362686,0.179673858602329,0.0060994403777645,0.147832044281395,0.169985273065067,0.12910689195653,0.446614349358305,-0.152727410814185,0,-0.076470748725991,0.178547416331584,0,0.0187946296550008,0.0445649999919453,0.49402867478225,0.110274161106875,0,0.0329917059545606,0.177849160267029,0.049192686821072,-0.21220704404731,0.408320859614493,0.098385373642144,0,0.103711240649242,0,0,0,0.037352813867006,0.098385373642144,0.222001531449125,0.00982219096015158,-0.0543081452239613,0,0.0052484405811327,0.0869429851867819,-0.069959178414046,0,-0.0419015424957689,0.0440226597335913,-0.0240312400264017,0.151375926414785,0,-0.262532246376602,-0.0890949297582995,0.0121968872902201,-0.324009431749593,0.297821603423112,-0.28646220276471,-0.128964057195956,-0.0501335403108343,-0.0425730411968301,0.0391631212713973,0.0102585411668563,0,-0.637351329173983,0.316087829626681,0.00682830431598846,-0.173969254208901,0.127871391724993,-0.183362974551672,0,0.0522046232143167,0,0.168092719410762,0.118488336233017,-0.439289374580686,0.0270313720393687,0,0.203469171985576,-0.483421895691564,0,0.220545286388155,0,0.63400316231321,0.293642647676382,0.360137421193907,-0.211650427864589,0.235369929867521,0,-0.0437133347962603,0,0,-0.237555640987332,0.0692330043180212,0,0.03783670910788,-0.127183157685225,0.100625569887052,0.130222347909463,0,0,0.920734380970191,0,0,0.0529940238882269,-0.0636048451378017,0.289724684644315,-0.00713292014235895,-0.0907557319104255,0.289131068213102,0,0,-0.177527765965176,0,-0.0188649515091655,0,0.098385373642144,0.103094859817156,0,0,0,0,0,0,0.0394288626567879,0,0,0,0,0,0.356858705643835,-0.108639908872051,0,0,0,0.098385373642144,0,0,0.098385373642144,0,0,0,0.316635925182416,-0.102189425692444,-0.12301741567642,0.152354521041205,0,0.049192686821072,0,-0.215723402553475,0.240773168916297,0,0.0466847098339518,0.098385373642144,0.049192686821072,0,0,-0.0861409897892114,0,0,0.049192686821072,0.049192686821072,-0.057730457053664,0.009573568235919,0,0,0,0.125396737538715,0,0,0,0,0.123184262040303,0,0,0.0143026660651115,0,-0.146229284860963,0.320769259593664,0,0.046793586592752,-0.0925817210981137,0.948086029155337,0,0,-0.162961758147743,0,0,-0.0293443144008612,0,0.402351139140505,0.00183251441027188,0,0,0,0,0,0,0.0318789089446411,0,0,0,0,0,0,0,0,0,0,0,-0.333086829582527,0.00616131698363365,0.185413762108657,0,0,0,0,0,0,0.339824852082048,0.461270394281275,0.049192686821072,0,0.049192686821072,0,0,0.098385373642144,0,0,0.254674394622312,0,0,0.098385373642144,0,0,0.347017369768416,0,0.098385373642144,0,0.682488471520654,0.0691960411593259,0,0,0.0273469098888959,0,0,0,0,0,0,0.0198314222512052,0,0,0,0,0,0,0.0552283302961358,-0.00988277496797463,0,0,0,0,0,0.098385373642144,0,0.0298757438763194,0,0.178547416331584,0,0,0.190824668373433,0,0,0,0.199912657293253,0,0.0858753912580107,0,0,0,0,0,0.208749634708823,0.089273708165792,0,0,0,0,0,0,0.098385373642144,0,0,0,0,0,0,0,-0.10747872747033,0,-0.0787275218444075,0,0,0,0.15023644074961,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0.049192686821072,0,0,0,0,0,0,0,0,0,0,0.30470904208241,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.148235525076339,0,0,0.238455926358147,0,0,0,0,0.178547416331584,0,0.0132540851329575,-0.00856323282798851,-0.0365797317638509,0,0,0,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,1.29712934027433,0.178547416331584,0,0,0,0,0,0,0,0,0.098385373642144,0,0,0,0,0,0,0,0,0,0,0,0.178547416331584,0,0,0.290686720662593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178547416331584,0,0.098385373642144,0.17228939749327,0,0,0,0,0,0,0.144536053056167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985289480629451,0,0,0,0.303882938108498,0,0,0,0,0,0,0.098385373642144,0,0.098385373642144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0983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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=52.16953 | |rna_weight_ug=52.16953 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-5807 | |sample_cell_catalog=CRL-5807 | ||
|sample_cell_line=NCI-H358 | |sample_cell_line=NCI-H358 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.66524893416627e-258!GO:0043226;organelle;1.59141348776222e-212!GO:0043229;intracellular organelle;4.5564397498953e-212!GO:0043231;intracellular membrane-bound organelle;3.65502380533017e-207!GO:0043227;membrane-bound organelle;6.25083449892263e-207!GO:0005737;cytoplasm;8.30149433443863e-173!GO:0044422;organelle part;1.54727652624158e-155!GO:0044446;intracellular organelle part;4.58321878861968e-154!GO:0044444;cytoplasmic part;1.53991447886427e-115!GO:0032991;macromolecular complex;6.78858253674734e-104!GO:0044237;cellular metabolic process;6.72437189365919e-99!GO:0044238;primary metabolic process;1.35041884819818e-98!GO:0005634;nucleus;5.53306468474556e-98!GO:0030529;ribonucleoprotein complex;1.13115814310608e-91!GO:0043170;macromolecule metabolic process;3.13581062878078e-91!GO:0044428;nuclear part;8.64560337463658e-84!GO:0003723;RNA binding;7.17280308754201e-81!GO:0043233;organelle lumen;9.18925754676267e-76!GO:0031974;membrane-enclosed lumen;9.18925754676267e-76!GO:0005515;protein binding;3.37303122626892e-66!GO:0005739;mitochondrion;1.19185755069712e-63!GO:0043283;biopolymer metabolic process;8.48268637908884e-58!GO:0006396;RNA processing;9.64968943213682e-56!GO:0005840;ribosome;5.59365035767655e-54!GO:0043234;protein complex;6.08361743697188e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.59861728596833e-50!GO:0006412;translation;2.32832752759423e-49!GO:0010467;gene expression;6.9605882520245e-49!GO:0031981;nuclear lumen;9.37148309007579e-49!GO:0019538;protein metabolic process;1.50452968954035e-47!GO:0031090;organelle membrane;1.52029417845533e-46!GO:0003735;structural constituent of ribosome;3.15175819760863e-46!GO:0043228;non-membrane-bound organelle;8.38250633004047e-46!GO:0043232;intracellular non-membrane-bound organelle;8.38250633004047e-46!GO:0016043;cellular component organization and biogenesis;1.59315382471736e-45!GO:0044267;cellular protein metabolic process;6.8678293252522e-43!GO:0016071;mRNA metabolic process;1.06950423157409e-42!GO:0044260;cellular macromolecule metabolic process;1.96082234631184e-42!GO:0033279;ribosomal subunit;1.54228313228457e-40!GO:0044429;mitochondrial part;1.90600765853351e-40!GO:0008380;RNA splicing;3.21866430381797e-40!GO:0031967;organelle envelope;6.43838611661333e-40!GO:0031975;envelope;1.58565355742395e-39!GO:0015031;protein transport;2.54773481360539e-39!GO:0009058;biosynthetic process;6.1598449254319e-39!GO:0009059;macromolecule biosynthetic process;1.39766226987694e-38!GO:0044249;cellular biosynthetic process;1.65510149579872e-38!GO:0033036;macromolecule localization;1.79354868201259e-37!GO:0005829;cytosol;3.20435332726236e-37!GO:0006397;mRNA processing;6.29468140382701e-37!GO:0006259;DNA metabolic process;9.2729995601109e-36!GO:0006996;organelle organization and biogenesis;1.24657154238007e-35!GO:0065003;macromolecular complex assembly;3.54035769949887e-34!GO:0008104;protein localization;5.59530490961633e-34!GO:0045184;establishment of protein localization;1.06546324551128e-33!GO:0046907;intracellular transport;1.85548206519463e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.08721499804937e-32!GO:0003676;nucleic acid binding;8.18642957062087e-31!GO:0022607;cellular component assembly;2.27505288855587e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.65660584126783e-30!GO:0005654;nucleoplasm;9.79466142612274e-29!GO:0005681;spliceosome;1.02939135698019e-28!GO:0000166;nucleotide binding;1.09237062504099e-28!GO:0006886;intracellular protein transport;9.65239104400278e-28!GO:0007049;cell cycle;1.57453342434375e-27!GO:0019866;organelle inner membrane;1.68484902202237e-25!GO:0005740;mitochondrial envelope;2.62959919389492e-25!GO:0016070;RNA metabolic process;6.48512858434558e-24!GO:0031966;mitochondrial membrane;1.13591820357484e-23!GO:0044451;nucleoplasm part;3.23158401911581e-23!GO:0005694;chromosome;4.60206928745429e-23!GO:0005743;mitochondrial inner membrane;4.65095011208855e-23!GO:0016462;pyrophosphatase activity;1.36974698296369e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.45472945882553e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.93594370448866e-22!GO:0044445;cytosolic part;2.97017118225528e-22!GO:0015935;small ribosomal subunit;3.74062812118769e-22!GO:0017111;nucleoside-triphosphatase activity;9.3025655286281e-22!GO:0005730;nucleolus;2.7062847667784e-21!GO:0044427;chromosomal part;3.81868452007699e-21!GO:0012505;endomembrane system;3.96081042410484e-21!GO:0022402;cell cycle process;2.02814115293413e-20!GO:0032553;ribonucleotide binding;2.34516082043508e-20!GO:0032555;purine ribonucleotide binding;2.34516082043508e-20!GO:0006119;oxidative phosphorylation;3.21706216267047e-20!GO:0044265;cellular macromolecule catabolic process;4.84502322367231e-20!GO:0051649;establishment of cellular localization;5.6472615600321e-20!GO:0017076;purine nucleotide binding;7.21699133031718e-20!GO:0015934;large ribosomal subunit;1.34973951415474e-19!GO:0044455;mitochondrial membrane part;2.83974035842816e-19!GO:0006974;response to DNA damage stimulus;3.07254873563298e-19!GO:0051641;cellular localization;4.5511345927321e-19!GO:0000278;mitotic cell cycle;4.99794907785663e-19!GO:0022618;protein-RNA complex assembly;9.0030084541191e-19!GO:0043285;biopolymer catabolic process;9.21164259704237e-19!GO:0016874;ligase activity;9.86029049852221e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;2.45383013714267e-18!GO:0051276;chromosome organization and biogenesis;3.74961943397881e-18!GO:0019941;modification-dependent protein catabolic process;4.42145396571026e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.42145396571026e-18!GO:0044257;cellular protein catabolic process;7.41127939863158e-18!GO:0031980;mitochondrial lumen;9.2125557939679e-18!GO:0005759;mitochondrial matrix;9.2125557939679e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.09936836270848e-17!GO:0006512;ubiquitin cycle;1.92642991345428e-17!GO:0005524;ATP binding;1.96594370997984e-17!GO:0009057;macromolecule catabolic process;2.28799708770906e-17!GO:0008134;transcription factor binding;3.08472821080967e-17!GO:0022403;cell cycle phase;3.34229760851807e-17!GO:0032559;adenyl ribonucleotide binding;4.18802447917949e-17!GO:0044248;cellular catabolic process;6.5391837363723e-17!GO:0030554;adenyl nucleotide binding;2.00365307737543e-16!GO:0006457;protein folding;2.0695101343735e-16!GO:0005746;mitochondrial respiratory chain;3.90718644930304e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.19038815702796e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.22488630310306e-15!GO:0030163;protein catabolic process;1.45278115388228e-15!GO:0008135;translation factor activity, nucleic acid binding;1.51410696862212e-15!GO:0006260;DNA replication;2.12727422467421e-15!GO:0006281;DNA repair;2.20544076818622e-15!GO:0005635;nuclear envelope;2.84546577494897e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.89669640171064e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.42920303744631e-15!GO:0000375;RNA splicing, via transesterification reactions;3.42920303744631e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.42920303744631e-15!GO:0000087;M phase of mitotic cell cycle;4.80181072792566e-15!GO:0007067;mitosis;8.37133203561152e-15!GO:0005761;mitochondrial ribosome;1.13722075181433e-14!GO:0000313;organellar ribosome;1.13722075181433e-14!GO:0043412;biopolymer modification;1.17195634621526e-14!GO:0042254;ribosome biogenesis and assembly;1.1979381541872e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.42200713296039e-14!GO:0000279;M phase;1.44249738268931e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.47620899090485e-14!GO:0003954;NADH dehydrogenase activity;1.47620899090485e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.47620899090485e-14!GO:0048770;pigment granule;1.88022702244e-14!GO:0042470;melanosome;1.88022702244e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;3.50723233988612e-14!GO:0006605;protein targeting;6.29411839263423e-14!GO:0051186;cofactor metabolic process;6.83833600447345e-14!GO:0031965;nuclear membrane;8.90315008721458e-14!GO:0044432;endoplasmic reticulum part;1.05713537257288e-13!GO:0016887;ATPase activity;1.44922481374503e-13!GO:0051301;cell division;1.49600404607741e-13!GO:0006323;DNA packaging;1.56183987262452e-13!GO:0005794;Golgi apparatus;1.69445831230034e-13!GO:0009719;response to endogenous stimulus;3.16418330897154e-13!GO:0042623;ATPase activity, coupled;3.64994212426042e-13!GO:0006464;protein modification process;4.81189077677229e-13!GO:0044453;nuclear membrane part;1.06025673634031e-12!GO:0005783;endoplasmic reticulum;1.19116454475302e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.74648984903439e-12!GO:0042773;ATP synthesis coupled electron transport;1.74648984903439e-12!GO:0048193;Golgi vesicle transport;2.1944275107827e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.26899710585587e-12!GO:0045271;respiratory chain complex I;2.26899710585587e-12!GO:0005747;mitochondrial respiratory chain complex I;2.26899710585587e-12!GO:0004386;helicase activity;2.55832816538516e-12!GO:0003743;translation initiation factor activity;3.16502621473157e-12!GO:0016604;nuclear body;3.65767986780659e-12!GO:0000785;chromatin;5.93882837371219e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.57929249827213e-12!GO:0006732;coenzyme metabolic process;7.53106789726598e-12!GO:0006913;nucleocytoplasmic transport;9.41345321244015e-12!GO:0051082;unfolded protein binding;1.11607087068345e-11!GO:0006413;translational initiation;1.52200649915477e-11!GO:0006399;tRNA metabolic process;2.13140777396424e-11!GO:0043687;post-translational protein modification;2.21964042956094e-11!GO:0051169;nuclear transport;2.71111366462116e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.74780577010037e-11!GO:0005643;nuclear pore;4.05265928940593e-11!GO:0003712;transcription cofactor activity;1.75232216182809e-10!GO:0006333;chromatin assembly or disassembly;1.85153938986677e-10!GO:0008026;ATP-dependent helicase activity;2.39979754231977e-10!GO:0016192;vesicle-mediated transport;3.44594936720765e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.51018901780267e-10!GO:0065004;protein-DNA complex assembly;3.92561272929948e-10!GO:0006446;regulation of translational initiation;4.01371562574727e-10!GO:0050657;nucleic acid transport;4.47943102953361e-10!GO:0051236;establishment of RNA localization;4.47943102953361e-10!GO:0050658;RNA transport;4.47943102953361e-10!GO:0008639;small protein conjugating enzyme activity;4.47943102953361e-10!GO:0009056;catabolic process;4.92158475081704e-10!GO:0005789;endoplasmic reticulum membrane;4.99787566898915e-10!GO:0006403;RNA localization;5.7618089702453e-10!GO:0006366;transcription from RNA polymerase II promoter;5.91888243030251e-10!GO:0004842;ubiquitin-protein ligase activity;7.86578229791173e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.18749372344436e-09!GO:0006364;rRNA processing;1.18749372344436e-09!GO:0006163;purine nucleotide metabolic process;1.40867116259285e-09!GO:0006461;protein complex assembly;1.62116636566161e-09!GO:0012501;programmed cell death;1.69295338953122e-09!GO:0050794;regulation of cellular process;2.35382091704442e-09!GO:0006164;purine nucleotide biosynthetic process;2.47928459026151e-09!GO:0016072;rRNA metabolic process;2.58359038994848e-09!GO:0019787;small conjugating protein ligase activity;2.60503971707628e-09!GO:0006915;apoptosis;2.62976645408147e-09!GO:0016607;nuclear speck;2.76006710315883e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.86786136430442e-09!GO:0000074;regulation of progression through cell cycle;5.30260099836225e-09!GO:0009055;electron carrier activity;5.83924621504337e-09!GO:0051726;regulation of cell cycle;5.85249751721696e-09!GO:0009259;ribonucleotide metabolic process;6.10165412250577e-09!GO:0065002;intracellular protein transport across a membrane;6.27992745202289e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.82583392984284e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.25870759178276e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.25870759178276e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.25870759178276e-08!GO:0009060;aerobic respiration;1.53848041267712e-08!GO:0046930;pore complex;1.69131447348483e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.86987145190278e-08!GO:0017038;protein import;1.91177581330643e-08!GO:0051028;mRNA transport;2.31925517065099e-08!GO:0008219;cell death;2.424111777442e-08!GO:0016265;death;2.424111777442e-08!GO:0009260;ribonucleotide biosynthetic process;2.77487168694813e-08!GO:0043038;amino acid activation;3.35422659298576e-08!GO:0006418;tRNA aminoacylation for protein translation;3.35422659298576e-08!GO:0043039;tRNA aminoacylation;3.35422659298576e-08!GO:0032446;protein modification by small protein conjugation;3.35422659298576e-08!GO:0015630;microtubule cytoskeleton;3.35422659298576e-08!GO:0043566;structure-specific DNA binding;3.42569725600683e-08!GO:0003697;single-stranded DNA binding;3.53269608006781e-08!GO:0006334;nucleosome assembly;3.80824154974681e-08!GO:0016567;protein ubiquitination;3.98008733698104e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.98679649917674e-08!GO:0009150;purine ribonucleotide metabolic process;4.28810583326735e-08!GO:0045333;cellular respiration;4.54361625720152e-08!GO:0016740;transferase activity;4.59423148998136e-08!GO:0016881;acid-amino acid ligase activity;5.01396932683104e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.41311750787924e-08!GO:0008565;protein transporter activity;5.46837072016993e-08!GO:0005793;ER-Golgi intermediate compartment;6.6083585673549e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.97011730535755e-08!GO:0019829;cation-transporting ATPase activity;1.04568847432616e-07!GO:0016568;chromatin modification;1.04661665301798e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.10623855559063e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.10623855559063e-07!GO:0009141;nucleoside triphosphate metabolic process;1.19409356249844e-07!GO:0005667;transcription factor complex;1.66686332289371e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.81478382511938e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04580283075873e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04580283075873e-07!GO:0031497;chromatin assembly;2.07811739178798e-07!GO:0006793;phosphorus metabolic process;2.53914006454187e-07!GO:0006796;phosphate metabolic process;2.53914006454187e-07!GO:0015986;ATP synthesis coupled proton transport;2.58817296623094e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.58817296623094e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.22814716077079e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.22814716077079e-07!GO:0009117;nucleotide metabolic process;3.94655892501064e-07!GO:0016787;hydrolase activity;4.31441185012995e-07!GO:0007005;mitochondrion organization and biogenesis;4.63364254253075e-07!GO:0006261;DNA-dependent DNA replication;4.89762812957826e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.2527210785703e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.62732437950869e-07!GO:0051188;cofactor biosynthetic process;5.65104825580298e-07!GO:0006099;tricarboxylic acid cycle;5.94330971016301e-07!GO:0046356;acetyl-CoA catabolic process;5.94330971016301e-07!GO:0000245;spliceosome assembly;5.94563115335766e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.32700250728107e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.99118367303121e-07!GO:0003924;GTPase activity;7.09365088052547e-07!GO:0000775;chromosome, pericentric region;8.67748668431563e-07!GO:0005768;endosome;9.32286597061756e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.11474216579063e-06!GO:0044431;Golgi apparatus part;1.28784571831204e-06!GO:0016564;transcription repressor activity;1.30185284783307e-06!GO:0000151;ubiquitin ligase complex;1.3798615616543e-06!GO:0006084;acetyl-CoA metabolic process;1.49927397680976e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.79809621964292e-06!GO:0005819;spindle;1.87927621345507e-06!GO:0048475;coated membrane;2.22521818115551e-06!GO:0030117;membrane coat;2.22521818115551e-06!GO:0031324;negative regulation of cellular metabolic process;2.25451201250483e-06!GO:0019222;regulation of metabolic process;2.26508526877904e-06!GO:0045259;proton-transporting ATP synthase complex;2.5707128423387e-06!GO:0006754;ATP biosynthetic process;2.75098602523632e-06!GO:0006753;nucleoside phosphate metabolic process;2.75098602523632e-06!GO:0004298;threonine endopeptidase activity;2.76694546193703e-06!GO:0016779;nucleotidyltransferase activity;2.78266694523937e-06!GO:0016310;phosphorylation;3.08726583933218e-06!GO:0051170;nuclear import;3.1147425175603e-06!GO:0043067;regulation of programmed cell death;3.18486122720659e-06!GO:0009892;negative regulation of metabolic process;3.38673950632616e-06!GO:0051246;regulation of protein metabolic process;3.50149071143033e-06!GO:0005657;replication fork;3.60187017507392e-06!GO:0042981;regulation of apoptosis;3.69712501424476e-06!GO:0003724;RNA helicase activity;4.68382958735875e-06!GO:0046034;ATP metabolic process;4.91063715597654e-06!GO:0016563;transcription activator activity;5.91839972357163e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.23900084661205e-06!GO:0043623;cellular protein complex assembly;6.3278395940358e-06!GO:0009108;coenzyme biosynthetic process;6.47725546408915e-06!GO:0009109;coenzyme catabolic process;6.76544017184705e-06!GO:0006606;protein import into nucleus;6.8202115083585e-06!GO:0051329;interphase of mitotic cell cycle;6.87618976962696e-06!GO:0048523;negative regulation of cellular process;7.15386576365839e-06!GO:0030120;vesicle coat;7.17496739716139e-06!GO:0030662;coated vesicle membrane;7.17496739716139e-06!GO:0050789;regulation of biological process;9.29491193849194e-06!GO:0006752;group transfer coenzyme metabolic process;9.49929377687827e-06!GO:0051325;interphase;1.05597790985931e-05!GO:0006613;cotranslational protein targeting to membrane;1.2006870781439e-05!GO:0005813;centrosome;1.20874483416542e-05!GO:0051168;nuclear export;1.30448740041656e-05!GO:0003713;transcription coactivator activity;1.360760299005e-05!GO:0005815;microtubule organizing center;1.46131251994509e-05!GO:0007051;spindle organization and biogenesis;1.57577001397287e-05!GO:0005525;GTP binding;1.82779759041577e-05!GO:0000314;organellar small ribosomal subunit;1.96408462627664e-05!GO:0005763;mitochondrial small ribosomal subunit;1.96408462627664e-05!GO:0051187;cofactor catabolic process;2.03546415194234e-05!GO:0000075;cell cycle checkpoint;2.33543929384571e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.65217056677294e-05!GO:0005788;endoplasmic reticulum lumen;3.34888651628824e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.83848869416115e-05!GO:0003714;transcription corepressor activity;4.63955054307007e-05!GO:0008094;DNA-dependent ATPase activity;4.65130967634122e-05!GO:0044440;endosomal part;4.78936937875354e-05!GO:0010008;endosome membrane;4.78936937875354e-05!GO:0005762;mitochondrial large ribosomal subunit;4.89864246325311e-05!GO:0000315;organellar large ribosomal subunit;4.89864246325311e-05!GO:0042802;identical protein binding;5.09026296461739e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.9630217419103e-05!GO:0048519;negative regulation of biological process;6.17768083889917e-05!GO:0051427;hormone receptor binding;6.78883554116689e-05!GO:0000139;Golgi membrane;6.79582669684233e-05!GO:0005798;Golgi-associated vesicle;7.4255930002607e-05!GO:0003729;mRNA binding;7.65717127578265e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.03485781264248e-05!GO:0007264;small GTPase mediated signal transduction;9.11953488018499e-05!GO:0043069;negative regulation of programmed cell death;0.000100409344018195!GO:0003690;double-stranded DNA binding;0.000106338975670891!GO:0016363;nuclear matrix;0.000115463699998949!GO:0006402;mRNA catabolic process;0.000133895298354744!GO:0015980;energy derivation by oxidation of organic compounds;0.000136227973510185!GO:0008186;RNA-dependent ATPase activity;0.000140822114686694!GO:0000786;nucleosome;0.000143256320797299!GO:0035257;nuclear hormone receptor binding;0.00014367028727936!GO:0005770;late endosome;0.00014367028727936!GO:0008654;phospholipid biosynthetic process;0.000152493418945864!GO:0008033;tRNA processing;0.000152493418945864!GO:0048471;perinuclear region of cytoplasm;0.000159311992567527!GO:0003899;DNA-directed RNA polymerase activity;0.000159311992567527!GO:0043066;negative regulation of apoptosis;0.000193579585656684!GO:0032561;guanyl ribonucleotide binding;0.000195742722343938!GO:0019001;guanyl nucleotide binding;0.000195742722343938!GO:0004674;protein serine/threonine kinase activity;0.000199049524553517!GO:0005773;vacuole;0.000200807814097248!GO:0043021;ribonucleoprotein binding;0.000213779612585794!GO:0051052;regulation of DNA metabolic process;0.000213980728812415!GO:0000323;lytic vacuole;0.000216374197526969!GO:0005764;lysosome;0.000216374197526969!GO:0031323;regulation of cellular metabolic process;0.000218682776644015!GO:0006916;anti-apoptosis;0.000246394921147947!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000247471423204017!GO:0016853;isomerase activity;0.000248977234096853!GO:0006401;RNA catabolic process;0.000297598269567986!GO:0031988;membrane-bound vesicle;0.000305064090937416!GO:0030867;rough endoplasmic reticulum membrane;0.000320500715723924!GO:0006383;transcription from RNA polymerase III promoter;0.000329972044741102!GO:0016481;negative regulation of transcription;0.000341555045603149!GO:0045786;negative regulation of progression through cell cycle;0.000344910816236202!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000351549708865577!GO:0016491;oxidoreductase activity;0.000359356697042778!GO:0016023;cytoplasmic membrane-bound vesicle;0.00036282056678375!GO:0019899;enzyme binding;0.000379791131209792!GO:0004004;ATP-dependent RNA helicase activity;0.000415103468293427!GO:0008250;oligosaccharyl transferase complex;0.000416187778432695!GO:0051252;regulation of RNA metabolic process;0.000436926919772255!GO:0044452;nucleolar part;0.000493161273545781!GO:0000776;kinetochore;0.000498576974703778!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000501095587898598!GO:0007010;cytoskeleton organization and biogenesis;0.000512745281160293!GO:0043681;protein import into mitochondrion;0.000516088586875284!GO:0003684;damaged DNA binding;0.000534895331788612!GO:0006414;translational elongation;0.000536143191114594!GO:0007088;regulation of mitosis;0.000566875442096732!GO:0009165;nucleotide biosynthetic process;0.000579054928217405!GO:0045454;cell redox homeostasis;0.000594966962200417!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000620609834718559!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000621763678651054!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0006988605524725!GO:0006302;double-strand break repair;0.000730783010197012!GO:0006350;transcription;0.000784700212360026!GO:0004576;oligosaccharyl transferase activity;0.000812104893262715!GO:0007059;chromosome segregation;0.000875728104024701!GO:0005885;Arp2/3 protein complex;0.000938620343913004!GO:0009116;nucleoside metabolic process;0.000975854915191585!GO:0005048;signal sequence binding;0.000975854915191585!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000978223736465152!GO:0051920;peroxiredoxin activity;0.000995001326269989!GO:0033116;ER-Golgi intermediate compartment membrane;0.000997591918496385!GO:0030658;transport vesicle membrane;0.00101538879683767!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00107863663059527!GO:0006612;protein targeting to membrane;0.00108492420773413!GO:0005684;U2-dependent spliceosome;0.00109177967827179!GO:0030133;transport vesicle;0.00112700528722799!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116633119812446!GO:0009112;nucleobase metabolic process;0.00135167281027455!GO:0000059;protein import into nucleus, docking;0.0014168118303807!GO:0005637;nuclear inner membrane;0.00154170609752717!GO:0048500;signal recognition particle;0.00154170609752717!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00157465989664465!GO:0003746;translation elongation factor activity;0.00161176971928311!GO:0006091;generation of precursor metabolites and energy;0.00162299286921244!GO:0003682;chromatin binding;0.00164399230371021!GO:0006611;protein export from nucleus;0.00167494039459063!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00169974607601065!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00169974607601065!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00169974607601065!GO:0032508;DNA duplex unwinding;0.00171114720281863!GO:0032392;DNA geometric change;0.00171114720281863!GO:0031982;vesicle;0.00171314458312501!GO:0016859;cis-trans isomerase activity;0.0018102602209692!GO:0051789;response to protein stimulus;0.00193355569077045!GO:0006986;response to unfolded protein;0.00193355569077045!GO:0006626;protein targeting to mitochondrion;0.00205228234924698!GO:0016251;general RNA polymerase II transcription factor activity;0.00207534113015035!GO:0016741;transferase activity, transferring one-carbon groups;0.00217014248171551!GO:0006839;mitochondrial transport;0.00226946108018449!GO:0007243;protein kinase cascade;0.00226946108018449!GO:0031410;cytoplasmic vesicle;0.00227998460615532!GO:0003678;DNA helicase activity;0.00230230608227669!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00232794339946144!GO:0015399;primary active transmembrane transporter activity;0.00232794339946144!GO:0006352;transcription initiation;0.00242450402040131!GO:0008092;cytoskeletal protein binding;0.00247023303712259!GO:0006310;DNA recombination;0.00250084033431943!GO:0031124;mRNA 3'-end processing;0.00257455489341892!GO:0030134;ER to Golgi transport vesicle;0.00257455489341892!GO:0030118;clathrin coat;0.00258924885997199!GO:0008629;induction of apoptosis by intracellular signals;0.00259023590209465!GO:0043488;regulation of mRNA stability;0.00259023590209465!GO:0043487;regulation of RNA stability;0.00259023590209465!GO:0000228;nuclear chromosome;0.00261000007569193!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00267811413207328!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00268611400336208!GO:0006268;DNA unwinding during replication;0.00277576626586438!GO:0006405;RNA export from nucleus;0.00278264624324383!GO:0030176;integral to endoplasmic reticulum membrane;0.00287717808584592!GO:0005769;early endosome;0.00295521439683261!GO:0018196;peptidyl-asparagine modification;0.00297010723730748!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00297010723730748!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00297010723730748!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00297010723730748!GO:0008168;methyltransferase activity;0.00300541702993089!GO:0019843;rRNA binding;0.0030123923727837!GO:0030127;COPII vesicle coat;0.00301484085123508!GO:0012507;ER to Golgi transport vesicle membrane;0.00301484085123508!GO:0030660;Golgi-associated vesicle membrane;0.00309203333038165!GO:0008312;7S RNA binding;0.00322432766471882!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00333539619831385!GO:0030880;RNA polymerase complex;0.00333883995132459!GO:0019752;carboxylic acid metabolic process;0.00340045386870889!GO:0000082;G1/S transition of mitotic cell cycle;0.00340954414384063!GO:0000049;tRNA binding;0.00341180725827022!GO:0008139;nuclear localization sequence binding;0.00349198368874582!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00350191096152678!GO:0005874;microtubule;0.00353018499522923!GO:0048522;positive regulation of cellular process;0.00354458067897739!GO:0031072;heat shock protein binding;0.00356454833895647!GO:0046489;phosphoinositide biosynthetic process;0.00359612995095509!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00383352471276537!GO:0010468;regulation of gene expression;0.00399378932029429!GO:0006082;organic acid metabolic process;0.00405312950171253!GO:0006144;purine base metabolic process;0.00419118006799258!GO:0005791;rough endoplasmic reticulum;0.00422086378112583!GO:0008234;cysteine-type peptidase activity;0.00428868207986999!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00434185816898616!GO:0015002;heme-copper terminal oxidase activity;0.00434185816898616!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00434185816898616!GO:0004129;cytochrome-c oxidase activity;0.00434185816898616!GO:0007052;mitotic spindle organization and biogenesis;0.00444893972992814!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00475590105490794!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00486118640561584!GO:0045047;protein targeting to ER;0.00486118640561584!GO:0044454;nuclear chromosome part;0.00497411669629948!GO:0007093;mitotic cell cycle checkpoint;0.00501627808896135!GO:0016791;phosphoric monoester hydrolase activity;0.0054105816268016!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00543704458954711!GO:0005905;coated pit;0.00560543877685377!GO:0003711;transcription elongation regulator activity;0.00560543877685377!GO:0004527;exonuclease activity;0.00564633826470866!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00576938330563577!GO:0065009;regulation of a molecular function;0.00601928239937334!GO:0050662;coenzyme binding;0.0062252462861813!GO:0007017;microtubule-based process;0.00634005181206335!GO:0046474;glycerophospholipid biosynthetic process;0.00647996732639481!GO:0030036;actin cytoskeleton organization and biogenesis;0.00649256574630337!GO:0005741;mitochondrial outer membrane;0.00654907815822856!GO:0046467;membrane lipid biosynthetic process;0.00658617309558885!GO:0051087;chaperone binding;0.00668514810928792!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00671054812392114!GO:0000428;DNA-directed RNA polymerase complex;0.00671054812392114!GO:0031968;organelle outer membrane;0.00671334599125497!GO:0051287;NAD binding;0.00671334599125497!GO:0030119;AP-type membrane coat adaptor complex;0.0067650075947855!GO:0006520;amino acid metabolic process;0.0077847483081244!GO:0000096;sulfur amino acid metabolic process;0.00790631432329916!GO:0016301;kinase activity;0.00818191195909844!GO:0015992;proton transport;0.00818883661001857!GO:0044262;cellular carbohydrate metabolic process;0.00819225412339737!GO:0006818;hydrogen transport;0.00819225412339737!GO:0045893;positive regulation of transcription, DNA-dependent;0.00832736298271133!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0083298698007393!GO:0065007;biological regulation;0.00835216107478974!GO:0051128;regulation of cellular component organization and biogenesis;0.00837905449564232!GO:0046483;heterocycle metabolic process;0.00845145058957615!GO:0006891;intra-Golgi vesicle-mediated transport;0.00856289001375888!GO:0043492;ATPase activity, coupled to movement of substances;0.00895179351979915!GO:0016197;endosome transport;0.00904036299415171!GO:0031252;leading edge;0.00911643769384145!GO:0045941;positive regulation of transcription;0.00926249067585614!GO:0017166;vinculin binding;0.00935397354554512!GO:0019867;outer membrane;0.00949312293967613!GO:0006284;base-excision repair;0.00964972143536217!GO:0005876;spindle microtubule;0.00969407042616787!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00980876912676922!GO:0046983;protein dimerization activity;0.00988762751988622!GO:0030131;clathrin adaptor complex;0.00990823959158881!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.010184326697721!GO:0006338;chromatin remodeling;0.0102443913755232!GO:0009081;branched chain family amino acid metabolic process;0.0103988000128045!GO:0015631;tubulin binding;0.010720522988421!GO:0007006;mitochondrial membrane organization and biogenesis;0.0108076215403607!GO:0032774;RNA biosynthetic process;0.0110596352137833!GO:0043284;biopolymer biosynthetic process;0.0110596352137833!GO:0005832;chaperonin-containing T-complex;0.0111666724065201!GO:0008408;3'-5' exonuclease activity;0.0113031760694969!GO:0016272;prefoldin complex;0.0117639071251291!GO:0031625;ubiquitin protein ligase binding;0.011837563448377!GO:0006506;GPI anchor biosynthetic process;0.0118762039066427!GO:0006275;regulation of DNA replication;0.0121582044914449!GO:0006950;response to stress;0.012179757432012!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0122698106745684!GO:0006505;GPI anchor metabolic process;0.0122698106745684!GO:0006351;transcription, DNA-dependent;0.0123953922862241!GO:0004532;exoribonuclease activity;0.0125043802669805!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0125043802669805!GO:0043022;ribosome binding;0.012524996758835!GO:0032200;telomere organization and biogenesis;0.012603533426307!GO:0000723;telomere maintenance;0.012603533426307!GO:0051540;metal cluster binding;0.012603533426307!GO:0051536;iron-sulfur cluster binding;0.012603533426307!GO:0046966;thyroid hormone receptor binding;0.0127830320703017!GO:0006497;protein amino acid lipidation;0.0131961648010656!GO:0043596;nuclear replication fork;0.0132482026289542!GO:0042770;DNA damage response, signal transduction;0.0132698911707711!GO:0009119;ribonucleoside metabolic process;0.0134302531945634!GO:0031902;late endosome membrane;0.01349054841389!GO:0006607;NLS-bearing substrate import into nucleus;0.013595828945917!GO:0031123;RNA 3'-end processing;0.013735152049212!GO:0008632;apoptotic program;0.0139057081866701!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0140669171243323!GO:0000339;RNA cap binding;0.0144844487981549!GO:0035258;steroid hormone receptor binding;0.0146255101765779!GO:0006595;polyamine metabolic process;0.0147903154700881!GO:0008022;protein C-terminus binding;0.0148347142433257!GO:0006378;mRNA polyadenylation;0.0151352636936744!GO:0042158;lipoprotein biosynthetic process;0.0153880268201207!GO:0003702;RNA polymerase II transcription factor activity;0.0154674380015456!GO:0045045;secretory pathway;0.0156061905453859!GO:0008180;signalosome;0.0161607467242884!GO:0030521;androgen receptor signaling pathway;0.0161938321974928!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163925960424907!GO:0042393;histone binding;0.0165753836199665!GO:0009967;positive regulation of signal transduction;0.0173447799562822!GO:0006740;NADPH regeneration;0.0175329609093012!GO:0006098;pentose-phosphate shunt;0.0175329609093012!GO:0005869;dynactin complex;0.0178560012339678!GO:0050178;phenylpyruvate tautomerase activity;0.0178560012339678!GO:0030029;actin filament-based process;0.0178830674283067!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0178845239925607!GO:0008652;amino acid biosynthetic process;0.0179096776974594!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0180008580881209!GO:0000086;G2/M transition of mitotic cell cycle;0.0184266605992336!GO:0043189;H4/H2A histone acetyltransferase complex;0.0185730955373813!GO:0033673;negative regulation of kinase activity;0.0199293866284166!GO:0006469;negative regulation of protein kinase activity;0.0199293866284166!GO:0046822;regulation of nucleocytoplasmic transport;0.0200175034844096!GO:0005669;transcription factor TFIID complex;0.0200513239263037!GO:0043154;negative regulation of caspase activity;0.0201643320939266!GO:0006376;mRNA splice site selection;0.0201643320939266!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0201643320939266!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0207487831318452!GO:0016044;membrane organization and biogenesis;0.0208551139486381!GO:0048487;beta-tubulin binding;0.0209367442087551!GO:0004721;phosphoprotein phosphatase activity;0.0210176222114219!GO:0007265;Ras protein signal transduction;0.0212532004341831!GO:0022890;inorganic cation transmembrane transporter activity;0.0213681225385721!GO:0006220;pyrimidine nucleotide metabolic process;0.0216982199413168!GO:0051059;NF-kappaB binding;0.0222197181930269!GO:0031529;ruffle organization and biogenesis;0.022343248791255!GO:0005758;mitochondrial intermembrane space;0.022343248791255!GO:0006270;DNA replication initiation;0.0229697344697114!GO:0019318;hexose metabolic process;0.0233349905226915!GO:0006672;ceramide metabolic process;0.0235528379257609!GO:0016790;thiolester hydrolase activity;0.0235750278451366!GO:0030433;ER-associated protein catabolic process;0.0242964782675344!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0242964782675344!GO:0045892;negative regulation of transcription, DNA-dependent;0.0245811313936417!GO:0000123;histone acetyltransferase complex;0.0245811313936417!GO:0019207;kinase regulator activity;0.0245819458237391!GO:0008361;regulation of cell size;0.0246763949565213!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0246763949565213!GO:0022415;viral reproductive process;0.0249451592678921!GO:0016126;sterol biosynthetic process;0.0256450943385499!GO:0048037;cofactor binding;0.0257213902212568!GO:0030384;phosphoinositide metabolic process;0.0266370606054075!GO:0005996;monosaccharide metabolic process;0.0267012214201701!GO:0051348;negative regulation of transferase activity;0.0267637802087973!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0270635091688305!GO:0000178;exosome (RNase complex);0.0281703447398233!GO:0006354;RNA elongation;0.028253978030828!GO:0043414;biopolymer methylation;0.028253978030828!GO:0031371;ubiquitin conjugating enzyme complex;0.0286444923381254!GO:0043065;positive regulation of apoptosis;0.0288993105928649!GO:0009083;branched chain family amino acid catabolic process;0.0292884543789387!GO:0000793;condensed chromosome;0.0293305855709304!GO:0035267;NuA4 histone acetyltransferase complex;0.0293668988850251!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0298272557236791!GO:0030320;cellular monovalent inorganic anion homeostasis;0.030112209982621!GO:0055083;monovalent inorganic anion homeostasis;0.030112209982621!GO:0055064;chloride ion homeostasis;0.030112209982621!GO:0030644;cellular chloride ion homeostasis;0.030112209982621!GO:0051101;regulation of DNA binding;0.0302949221633645!GO:0000792;heterochromatin;0.0305975244581254!GO:0043068;positive regulation of programmed cell death;0.0306800094923079!GO:0046128;purine ribonucleoside metabolic process;0.0307312945728831!GO:0042278;purine nucleoside metabolic process;0.0307312945728831!GO:0007050;cell cycle arrest;0.0315738377882278!GO:0004860;protein kinase inhibitor activity;0.0315756636209447!GO:0007004;telomere maintenance via telomerase;0.0319912625656886!GO:0051338;regulation of transferase activity;0.032422378695449!GO:0030518;steroid hormone receptor signaling pathway;0.0324310950372755!GO:0019887;protein kinase regulator activity;0.032488086245182!GO:0005652;nuclear lamina;0.0325467953262554!GO:0004518;nuclease activity;0.0329617136108743!GO:0008097;5S rRNA binding;0.0339078667031195!GO:0019783;small conjugating protein-specific protease activity;0.0340149785353588!GO:0032906;transforming growth factor-beta2 production;0.0340784412758978!GO:0032909;regulation of transforming growth factor-beta2 production;0.0340784412758978!GO:0008538;proteasome activator activity;0.0351483671921146!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0351550985431148!GO:0033043;regulation of organelle organization and biogenesis;0.0351550985431148!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0351550985431148!GO:0006892;post-Golgi vesicle-mediated transport;0.0358229877099879!GO:0005784;translocon complex;0.0360781616993166!GO:0005663;DNA replication factor C complex;0.0362501157295276!GO:0045449;regulation of transcription;0.0368263977864!GO:0009451;RNA modification;0.0368340806653369!GO:0030911;TPR domain binding;0.0368557418675767!GO:0030132;clathrin coat of coated pit;0.0370365417902697!GO:0016049;cell growth;0.0373232759512974!GO:0043624;cellular protein complex disassembly;0.0373232759512974!GO:0008017;microtubule binding;0.0373232759512974!GO:0016311;dephosphorylation;0.0375940100090518!GO:0032259;methylation;0.0376994073996298!GO:0006301;postreplication repair;0.0378371354038256!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0378607237269611!GO:0004192;cathepsin D activity;0.0380218979295781!GO:0000725;recombinational repair;0.0381314539238605!GO:0000724;double-strand break repair via homologous recombination;0.0381314539238605!GO:0031970;organelle envelope lumen;0.0388387453912874!GO:0009303;rRNA transcription;0.038893414997336!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.038944709308031!GO:0000922;spindle pole;0.0391846744216863!GO:0004843;ubiquitin-specific protease activity;0.0395403918810968!GO:0006984;ER-nuclear signaling pathway;0.0395792833226572!GO:0050790;regulation of catalytic activity;0.0399485560416038!GO:0003923;GPI-anchor transamidase activity;0.0402960332967993!GO:0016255;attachment of GPI anchor to protein;0.0402960332967993!GO:0042765;GPI-anchor transamidase complex;0.0402960332967993!GO:0030663;COPI coated vesicle membrane;0.0402960332967993!GO:0030126;COPI vesicle coat;0.0402960332967993!GO:0006213;pyrimidine nucleoside metabolic process;0.0403296347902352!GO:0043433;negative regulation of transcription factor activity;0.0409580333646668!GO:0030140;trans-Golgi network transport vesicle;0.042358202253922!GO:0006695;cholesterol biosynthetic process;0.042358202253922!GO:0008426;protein kinase C inhibitor activity;0.0424913323660571!GO:0004239;methionyl aminopeptidase activity;0.0425469838611822!GO:0042769;DNA damage response, detection of DNA damage;0.0434490116620466!GO:0043549;regulation of kinase activity;0.0434973514036292!GO:0031570;DNA integrity checkpoint;0.043521564709648!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0436299727116596!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0442308832585486!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0442315119427615!GO:0017134;fibroblast growth factor binding;0.0445312984035802!GO:0007266;Rho protein signal transduction;0.0447609708678317!GO:0004221;ubiquitin thiolesterase activity;0.0448119216171457!GO:0005092;GDP-dissociation inhibitor activity;0.0449750554098953!GO:0004448;isocitrate dehydrogenase activity;0.0449851085283909!GO:0006289;nucleotide-excision repair;0.0451204710423161!GO:0000209;protein polyubiquitination;0.0454090525044117!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0464682689418886!GO:0030125;clathrin vesicle coat;0.0467059739134038!GO:0030665;clathrin coated vesicle membrane;0.0467059739134038!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0467788910671405!GO:0000152;nuclear ubiquitin ligase complex;0.0474117072387865!GO:0001558;regulation of cell growth;0.0474640514215445!GO:0003725;double-stranded RNA binding;0.0476110376788705!GO:0006458;'de novo' protein folding;0.047942448705413!GO:0051084;'de novo' posttranslational protein folding;0.047942448705413!GO:0000175;3'-5'-exoribonuclease activity;0.0481056646326745!GO:0040029;regulation of gene expression, epigenetic;0.0482076092603688!GO:0006749;glutathione metabolic process;0.0486279753081388!GO:0051539;4 iron, 4 sulfur cluster binding;0.0486279753081388!GO:0004003;ATP-dependent DNA helicase activity;0.0486279753081388!GO:0006650;glycerophospholipid metabolic process;0.0491676534512804!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0494101967536104!GO:0006519;amino acid and derivative metabolic process;0.0495916851053063!GO:0043601;nuclear replisome;0.0496156546667827!GO:0030894;replisome;0.0496156546667827!GO:0007242;intracellular signaling cascade;0.0496904586236737!GO:0008637;apoptotic mitochondrial changes;0.0497864577364079!GO:0000097;sulfur amino acid biosynthetic process;0.049860276461179 | |||
|sample_id=10709 | |sample_id=10709 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=SNAI1..3:2.11130600758;ZEB1:1.72433434218;FOXL1:1.64719262825;NKX2-1,4:1.3923337432;CDC5L:1.35216086934;ZNF148:1.34556314538;PITX1..3:1.25896136874;MYOD1:1.15641941903;ZNF423:1.05848355349;bHLH_family:1.01538625011;ONECUT1,2:0.971071326376;E2F1..5:0.954287912941;NKX6-1,2:0.938827294487;NFY{A,B,C}:0.900505153049;SP1:0.848736847105;ZBTB16:0.83000069297;FOXQ1:0.824067658057;NKX2-3_NKX2-5:0.769442033409;FOXP1:0.713302766954;ELK1,4_GABP{A,B1}:0.692569886124;TFDP1:0.672338568732;RFX2..5_RFXANK_RFXAP:0.668023982949;PPARG:0.650453490425;POU2F1..3:0.649066334375;TLX1..3_NFIC{dimer}:0.593479370008;FOX{D1,D2}:0.582993914482;ARID5B:0.549472403374;NKX3-1:0.538618329601;RFX1:0.533433867277;TEF:0.527902995103;FOX{I1,J2}:0.511631471444;GFI1:0.459960942194;HOX{A4,D4}:0.458235544293;TEAD1:0.450492882738;PAX8:0.419418251418;XCPE1{core}:0.405819077683;HOX{A6,A7,B6,B7}:0.403818141128;RBPJ:0.39255373735;DBP:0.371198418633;VSX1,2:0.369910421271;BACH2:0.342086418962;SOX17:0.304912901027;NFE2:0.280031357407;CDX1,2,4:0.270895798884;BREu{core}:0.266523682698;FOS_FOS{B,L1}_JUN{B,D}:0.265471144926;TOPORS:0.262990569146;ZNF143:0.251215578213;NRF1:0.244548082784;FOSL2:0.237371490343;IKZF2:0.209858517148;T:0.209858428243;MYB:0.185060529566;AHR_ARNT_ARNT2:0.166973124173;SOX{8,9,10}:0.166165668973;TBX4,5:0.164107401939;NR6A1:0.131312753135;FOXM1:0.126893785767;OCT4_SOX2{dimer}:0.126734916016;ZFP161:0.121414234814;STAT1,3:0.115301090389;IRF7:0.109544510216;PAX6:0.0895689942871;FOXA2:0.0840120242452;AIRE:0.0738526880443;YY1:0.063476058192;SOX2:0.0476828226597;RORA:0.0420318883076;PDX1:0.0329266855587;TP53:0.0160930946785;POU1F1:-0.0150878521683;HNF4A_NR2F1,2:-0.0168174081385;EP300:-0.0192665171101;LMO2:-0.0477793302109;STAT5{A,B}:-0.0556027128687;FOXO1,3,4:-0.0577310270662;GLI1..3:-0.0851040612066;ATF5_CREB3:-0.0881127466987;HMGA1,2:-0.0909779316836;HAND1,2:-0.0911574258044;MEF2{A,B,C,D}:-0.0920435529591;NFIL3:-0.113266594462;ADNP_IRX_SIX_ZHX:-0.123020123337;NFIX:-0.141079931301;FOXD3:-0.14343587375;UFEwm:-0.143949020228;POU6F1:-0.150229932417;HNF1A:-0.151639098511;ZBTB6:-0.155241814414;POU3F1..4:-0.165795007311;TFCP2:-0.165913602915;DMAP1_NCOR{1,2}_SMARC:-0.171844676721;PAX4:-0.229418645935;NFKB1_REL_RELA:-0.244482262414;EGR1..3:-0.246738766328;PAX5:-0.251731441621;PAX1,9:-0.258022036286;PAX2:-0.263823529616;LEF1_TCF7_TCF7L1,2:-0.272691460877;IRF1,2:-0.278877744396;MED-1{core}:-0.288416828357;SRF:-0.292995165205;GTF2A1,2:-0.29316124726;ESR1:-0.295836377887;MTF1:-0.298360275088;ZIC1..3:-0.305418931279;FOX{F1,F2,J1}:-0.309916960496;REST:-0.310316485351;NR5A1,2:-0.313219503443;IKZF1:-0.315257283779;EVI1:-0.319486734378;MYBL2:-0.325259544122;CRX:-0.33200161909;AR:-0.343709719699;TFAP2B:-0.346024510803;ELF1,2,4:-0.352055727044;RXRA_VDR{dimer}:-0.361454299733;CEBPA,B_DDIT3:-0.36852094391;BPTF:-0.385355451187;EBF1:-0.389351471015;ALX1:-0.390150872697;JUN:-0.395069462326;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.407179126758;PRRX1,2:-0.424388782939;RUNX1..3:-0.432139812171;HIC1:-0.43396623113;HSF1,2:-0.43558030903;HOX{A5,B5}:-0.443902581442;HOXA9_MEIS1:-0.446495273857;FOXN1:-0.452250426923;HBP1_HMGB_SSRP1_UBTF:-0.459527536028;ATF2:-0.463402996467;PATZ1:-0.472279816373;SPIB:-0.475473415022;NFE2L2:-0.478873498139;RXR{A,B,G}:-0.487206665864;SOX5:-0.491034735039;RREB1:-0.494535160495;TFAP2{A,C}:-0.520224148729;MTE{core}:-0.522615451797;HLF:-0.524398987793;FOXP3:-0.525064047423;NANOG:-0.537436918385;CUX2:-0.540434394466;ETS1,2:-0.541041835646;STAT2,4,6:-0.565759657144;GTF2I:-0.568940156322;HIF1A:-0.595814546025;TBP:-0.596095687795;CREB1:-0.628275864284;GATA6:-0.636978599128;TFAP4:-0.637739024539;SPI1:-0.64652404285;MYFfamily:-0.671473029418;MAZ:-0.699218731988;PRDM1:-0.701017932826;POU5F1:-0.721306953486;NHLH1,2:-0.730195177912;ZNF384:-0.731264773885;ATF4:-0.735369528779;LHX3,4:-0.739029997046;KLF4:-0.74378489753;XBP1:-0.759007493191;PAX3,7:-0.761565683539;NKX3-2:-0.762582822606;ALX4:-0.793214868513;TLX2:-0.797877159086;GFI1B:-0.81192866364;MZF1:-0.81499574571;HMX1:-0.849107484221;GZF1:-0.905722287033;NR1H4:-0.953518156631;ATF6:-0.96484800806;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.973029720048;GATA4:-0.991658563282;NFATC1..3:-0.994390799456;EN1,2:-1.00839661303;TGIF1:-1.01098863604;NKX2-2,8:-1.02263037984;SREBF1,2:-1.05194390657;PBX1:-1.08585892689;TAL1_TCF{3,4,12}:-1.10593775934;NR3C1:-1.17865520735;NFE2L1:-1.22814995075;HES1:-1.30645345394;SPZ1:-1.39788396987;GCM1,2:-1.40512099372;ESRRA:-1.50291609172;SMAD1..7,9:-1.65519946476;ZNF238:-1.66641178611;MAFB:-1.74729907493;NANOG{mouse}:-2.09430285305 | |top_motifs=SNAI1..3:2.11130600758;ZEB1:1.72433434218;FOXL1:1.64719262825;NKX2-1,4:1.3923337432;CDC5L:1.35216086934;ZNF148:1.34556314538;PITX1..3:1.25896136874;MYOD1:1.15641941903;ZNF423:1.05848355349;bHLH_family:1.01538625011;ONECUT1,2:0.971071326376;E2F1..5:0.954287912941;NKX6-1,2:0.938827294487;NFY{A,B,C}:0.900505153049;SP1:0.848736847105;ZBTB16:0.83000069297;FOXQ1:0.824067658057;NKX2-3_NKX2-5:0.769442033409;FOXP1:0.713302766954;ELK1,4_GABP{A,B1}:0.692569886124;TFDP1:0.672338568732;RFX2..5_RFXANK_RFXAP:0.668023982949;PPARG:0.650453490425;POU2F1..3:0.649066334375;TLX1..3_NFIC{dimer}:0.593479370008;FOX{D1,D2}:0.582993914482;ARID5B:0.549472403374;NKX3-1:0.538618329601;RFX1:0.533433867277;TEF:0.527902995103;FOX{I1,J2}:0.511631471444;GFI1:0.459960942194;HOX{A4,D4}:0.458235544293;TEAD1:0.450492882738;PAX8:0.419418251418;XCPE1{core}:0.405819077683;HOX{A6,A7,B6,B7}:0.403818141128;RBPJ:0.39255373735;DBP:0.371198418633;VSX1,2:0.369910421271;BACH2:0.342086418962;SOX17:0.304912901027;NFE2:0.280031357407;CDX1,2,4:0.270895798884;BREu{core}:0.266523682698;FOS_FOS{B,L1}_JUN{B,D}:0.265471144926;TOPORS:0.262990569146;ZNF143:0.251215578213;NRF1:0.244548082784;FOSL2:0.237371490343;IKZF2:0.209858517148;T:0.209858428243;MYB:0.185060529566;AHR_ARNT_ARNT2:0.166973124173;SOX{8,9,10}:0.166165668973;TBX4,5:0.164107401939;NR6A1:0.131312753135;FOXM1:0.126893785767;OCT4_SOX2{dimer}:0.126734916016;ZFP161:0.121414234814;STAT1,3:0.115301090389;IRF7:0.109544510216;PAX6:0.0895689942871;FOXA2:0.0840120242452;AIRE:0.0738526880443;YY1:0.063476058192;SOX2:0.0476828226597;RORA:0.0420318883076;PDX1:0.0329266855587;TP53:0.0160930946785;POU1F1:-0.0150878521683;HNF4A_NR2F1,2:-0.0168174081385;EP300:-0.0192665171101;LMO2:-0.0477793302109;STAT5{A,B}:-0.0556027128687;FOXO1,3,4:-0.0577310270662;GLI1..3:-0.0851040612066;ATF5_CREB3:-0.0881127466987;HMGA1,2:-0.0909779316836;HAND1,2:-0.0911574258044;MEF2{A,B,C,D}:-0.0920435529591;NFIL3:-0.113266594462;ADNP_IRX_SIX_ZHX:-0.123020123337;NFIX:-0.141079931301;FOXD3:-0.14343587375;UFEwm:-0.143949020228;POU6F1:-0.150229932417;HNF1A:-0.151639098511;ZBTB6:-0.155241814414;POU3F1..4:-0.165795007311;TFCP2:-0.165913602915;DMAP1_NCOR{1,2}_SMARC:-0.171844676721;PAX4:-0.229418645935;NFKB1_REL_RELA:-0.244482262414;EGR1..3:-0.246738766328;PAX5:-0.251731441621;PAX1,9:-0.258022036286;PAX2:-0.263823529616;LEF1_TCF7_TCF7L1,2:-0.272691460877;IRF1,2:-0.278877744396;MED-1{core}:-0.288416828357;SRF:-0.292995165205;GTF2A1,2:-0.29316124726;ESR1:-0.295836377887;MTF1:-0.298360275088;ZIC1..3:-0.305418931279;FOX{F1,F2,J1}:-0.309916960496;REST:-0.310316485351;NR5A1,2:-0.313219503443;IKZF1:-0.315257283779;EVI1:-0.319486734378;MYBL2:-0.325259544122;CRX:-0.33200161909;AR:-0.343709719699;TFAP2B:-0.346024510803;ELF1,2,4:-0.352055727044;RXRA_VDR{dimer}:-0.361454299733;CEBPA,B_DDIT3:-0.36852094391;BPTF:-0.385355451187;EBF1:-0.389351471015;ALX1:-0.390150872697;JUN:-0.395069462326;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.407179126758;PRRX1,2:-0.424388782939;RUNX1..3:-0.432139812171;HIC1:-0.43396623113;HSF1,2:-0.43558030903;HOX{A5,B5}:-0.443902581442;HOXA9_MEIS1:-0.446495273857;FOXN1:-0.452250426923;HBP1_HMGB_SSRP1_UBTF:-0.459527536028;ATF2:-0.463402996467;PATZ1:-0.472279816373;SPIB:-0.475473415022;NFE2L2:-0.478873498139;RXR{A,B,G}:-0.487206665864;SOX5:-0.491034735039;RREB1:-0.494535160495;TFAP2{A,C}:-0.520224148729;MTE{core}:-0.522615451797;HLF:-0.524398987793;FOXP3:-0.525064047423;NANOG:-0.537436918385;CUX2:-0.540434394466;ETS1,2:-0.541041835646;STAT2,4,6:-0.565759657144;GTF2I:-0.568940156322;HIF1A:-0.595814546025;TBP:-0.596095687795;CREB1:-0.628275864284;GATA6:-0.636978599128;TFAP4:-0.637739024539;SPI1:-0.64652404285;MYFfamily:-0.671473029418;MAZ:-0.699218731988;PRDM1:-0.701017932826;POU5F1:-0.721306953486;NHLH1,2:-0.730195177912;ZNF384:-0.731264773885;ATF4:-0.735369528779;LHX3,4:-0.739029997046;KLF4:-0.74378489753;XBP1:-0.759007493191;PAX3,7:-0.761565683539;NKX3-2:-0.762582822606;ALX4:-0.793214868513;TLX2:-0.797877159086;GFI1B:-0.81192866364;MZF1:-0.81499574571;HMX1:-0.849107484221;GZF1:-0.905722287033;NR1H4:-0.953518156631;ATF6:-0.96484800806;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.973029720048;GATA4:-0.991658563282;NFATC1..3:-0.994390799456;EN1,2:-1.00839661303;TGIF1:-1.01098863604;NKX2-2,8:-1.02263037984;SREBF1,2:-1.05194390657;PBX1:-1.08585892689;TAL1_TCF{3,4,12}:-1.10593775934;NR3C1:-1.17865520735;NFE2L1:-1.22814995075;HES1:-1.30645345394;SPZ1:-1.39788396987;GCM1,2:-1.40512099372;ESRRA:-1.50291609172;SMAD1..7,9:-1.65519946476;ZNF238:-1.66641178611;MAFB:-1.74729907493;NANOG{mouse}:-2.09430285305 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10709-109H7;search_select_hide=table117:FF:10709-109H7 | |||
}} | }} | ||
Latest revision as of 14:34, 3 June 2020
| Name: | bronchioalveolar carcinoma cell line:NCI-H358 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11840 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11840
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11840
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.699 |
| 10 | 10 | 0.446 |
| 100 | 100 | 0.201 |
| 101 | 101 | 0.841 |
| 102 | 102 | 0.229 |
| 103 | 103 | 0.999 |
| 104 | 104 | 0.799 |
| 105 | 105 | 0.67 |
| 106 | 106 | 0.118 |
| 107 | 107 | 0.454 |
| 108 | 108 | 0.368 |
| 109 | 109 | 0.264 |
| 11 | 11 | 0.56 |
| 110 | 110 | 0.91 |
| 111 | 111 | 0.497 |
| 112 | 112 | 0.011 |
| 113 | 113 | 0.511 |
| 114 | 114 | 0.501 |
| 115 | 115 | 0.752 |
| 116 | 116 | 0.248 |
| 117 | 117 | 0.186 |
| 118 | 118 | 0.557 |
| 119 | 119 | 0.826 |
| 12 | 12 | 0.479 |
| 120 | 120 | 0.435 |
| 121 | 121 | 0.926 |
| 122 | 122 | 0.383 |
| 123 | 123 | 0.246 |
| 124 | 124 | 0.215 |
| 125 | 125 | 0.753 |
| 126 | 126 | 0.226 |
| 127 | 127 | 0.765 |
| 128 | 128 | 0.0945 |
| 129 | 129 | 0.88 |
| 13 | 13 | 0.0427 |
| 130 | 130 | 0.422 |
| 131 | 131 | 0.248 |
| 132 | 132 | 0.629 |
| 133 | 133 | 0.0106 |
| 134 | 134 | 0.171 |
| 135 | 135 | 0.0185 |
| 136 | 136 | 0.0723 |
| 137 | 137 | 0.0469 |
| 138 | 138 | 0.216 |
| 139 | 139 | 0.382 |
| 14 | 14 | 0.297 |
| 140 | 140 | 0.18 |
| 141 | 141 | 0.985 |
| 142 | 142 | 0.789 |
| 143 | 143 | 0.831 |
| 144 | 144 | 0.285 |
| 145 | 145 | 0.377 |
| 146 | 146 | 0.641 |
| 147 | 147 | 0.64 |
| 148 | 148 | 0.232 |
| 149 | 149 | 0.447 |
| 15 | 15 | 0.795 |
| 150 | 150 | 0.854 |
| 151 | 151 | 0.89 |
| 152 | 152 | 0.545 |
| 153 | 153 | 0.104 |
| 154 | 154 | 0.708 |
| 155 | 155 | 0.261 |
| 156 | 156 | 0.522 |
| 157 | 157 | 0.769 |
| 158 | 158 | 0.543 |
| 159 | 159 | 0.576 |
| 16 | 16 | 0.633 |
| 160 | 160 | 0.593 |
| 161 | 161 | 0.445 |
| 162 | 162 | 0.373 |
| 163 | 163 | 0.889 |
| 164 | 164 | 0.00447 |
| 165 | 165 | 0.997 |
| 166 | 166 | 0.274 |
| 167 | 167 | 0.328 |
| 168 | 168 | 0.127 |
| 169 | 169 | 0.497 |
| 17 | 17 | 0.853 |
| 18 | 18 | 0.0183 |
| 19 | 19 | 0.108 |
| 2 | 2 | 0.752 |
| 20 | 20 | 0.292 |
| 21 | 21 | 0.781 |
| 22 | 22 | 0.742 |
| 23 | 23 | 0.00258 |
| 24 | 24 | 0.742 |
| 25 | 25 | 0.741 |
| 26 | 26 | 0.274 |
| 27 | 27 | 0.432 |
| 28 | 28 | 0.549 |
| 29 | 29 | 0.702 |
| 3 | 3 | 0.683 |
| 30 | 30 | 0.671 |
| 31 | 31 | 0.137 |
| 32 | 32 | 0.00159 |
| 33 | 33 | 0.104 |
| 34 | 34 | 0.029 |
| 35 | 35 | 0.0401 |
| 36 | 36 | 0.699 |
| 37 | 37 | 0.788 |
| 38 | 38 | 0.843 |
| 39 | 39 | 0.663 |
| 4 | 4 | 0.0412 |
| 40 | 40 | 0.0664 |
| 41 | 41 | 0.327 |
| 42 | 42 | 0.764 |
| 43 | 43 | 0.184 |
| 44 | 44 | 0.516 |
| 45 | 45 | 0.524 |
| 46 | 46 | 0.899 |
| 47 | 47 | 0.882 |
| 48 | 48 | 0.978 |
| 49 | 49 | 0.975 |
| 5 | 5 | 0.463 |
| 50 | 50 | 0.746 |
| 51 | 51 | 0.704 |
| 52 | 52 | 0.554 |
| 53 | 53 | 0.877 |
| 54 | 54 | 0.801 |
| 55 | 55 | 0.825 |
| 56 | 56 | 0.967 |
| 57 | 57 | 0.829 |
| 58 | 58 | 0.469 |
| 59 | 59 | 0.317 |
| 6 | 6 | 0.556 |
| 60 | 60 | 0.515 |
| 61 | 61 | 0.244 |
| 62 | 62 | 0.118 |
| 63 | 63 | 0.957 |
| 64 | 64 | 0.848 |
| 65 | 65 | 0.566 |
| 66 | 66 | 2.55021e-8 |
| 67 | 67 | 0.945 |
| 68 | 68 | 0.012 |
| 69 | 69 | 0.288 |
| 7 | 7 | 0.709 |
| 70 | 70 | 0.877 |
| 71 | 71 | 0.436 |
| 72 | 72 | 0.411 |
| 73 | 73 | 0.599 |
| 74 | 74 | 0.0389 |
| 75 | 75 | 0.353 |
| 76 | 76 | 0.712 |
| 77 | 77 | 0.147 |
| 78 | 78 | 0.181 |
| 79 | 79 | 0.0902 |
| 8 | 8 | 0.856 |
| 80 | 80 | 0.0683 |
| 81 | 81 | 0.0321 |
| 82 | 82 | 0.182 |
| 83 | 83 | 0.877 |
| 84 | 84 | 0.811 |
| 85 | 85 | 0.0128 |
| 86 | 86 | 0.677 |
| 87 | 87 | 0.0542 |
| 88 | 88 | 0.896 |
| 89 | 89 | 0.999 |
| 9 | 9 | 0.0328 |
| 90 | 90 | 0.531 |
| 91 | 91 | 0.156 |
| 92 | 92 | 0.316 |
| 93 | 93 | 0.467 |
| 94 | 94 | 0.283 |
| 95 | 95 | 0.263 |
| 96 | 96 | 0.356 |
| 97 | 97 | 0.698 |
| 98 | 98 | 0.408 |
| 99 | 99 | 0.93 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11840
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102060 bronchioalveolar carcinoma cell sample
FF:0102835 NCI-H358 cell sample
FF:0104802 bronchioloalveolar carcinoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102553 (non-small cell lung cancer cell line sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)
0102835 (NCI-H358 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
