FFCP PHASE1:Hg19::chr3:181429641..181429650,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6657 | |EntrezGene=6657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11195 | |HGNC=11195 | ||
|TSSclassifier=strong | |||
|UniProt=P48431 | |UniProt=P48431 | ||
|association_with_transcript=-61bp_to_NM_003106_5end | |association_with_transcript=-61bp_to_NM_003106_5end | ||
|cluster_id=chr3:181429641..181429650,+ | |||
|coexpression_cluster_id=C1056 | |coexpression_cluster_id=C1056 | ||
|description=CAGE_peak_3_at_SOX2_5end | |description=CAGE_peak_3_at_SOX2_5end | ||
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|ontology_enrichment_celltype=CL:0002319!5.69e-21!25;CL:0000047!2.67e-12!8;CL:0000133!9.57e-12!59;CL:0000095!2.73e-11!17;CL:0000123!2.73e-11!17;CL:0000128!1.54e-10!7;CL:0000126!1.54e-10!7;CL:0000127!1.54e-10!7;CL:0002453!1.54e-10!7;CL:0000540!2.66e-09!6;CL:0000031!2.66e-09!6;CL:0000404!2.66e-09!6;CL:0000221!3.30e-09!71;CL:0000243!3.44e-09!15;CL:0000125!3.44e-09!15;CL:0000030!3.44e-09!15;CL:0000339!3.44e-09!15;CL:0002322!3.08e-07!5;CL:0000333!7.10e-07!41 | |ontology_enrichment_celltype=CL:0002319!5.69e-21!25;CL:0000047!2.67e-12!8;CL:0000133!9.57e-12!59;CL:0000095!2.73e-11!17;CL:0000123!2.73e-11!17;CL:0000128!1.54e-10!7;CL:0000126!1.54e-10!7;CL:0000127!1.54e-10!7;CL:0002453!1.54e-10!7;CL:0000540!2.66e-09!6;CL:0000031!2.66e-09!6;CL:0000404!2.66e-09!6;CL:0000221!3.30e-09!71;CL:0000243!3.44e-09!15;CL:0000125!3.44e-09!15;CL:0000030!3.44e-09!15;CL:0000339!3.44e-09!15;CL:0002322!3.08e-07!5;CL:0000333!7.10e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0002319;3.75e-17;25!CL:0000540;1.34e-11;6!CL:0000404;1.34e-11;6!CL:0000128;2.82e-10;7!CL:0000126;2.82e-10;7!CL:0000127;2.82e-10;7!CL:0002605;9.67e-10;3!CL:0002322;4.21e-08;5!CL:0000047;3.95e-07;2 | |ontology_enrichment_celltype_v019=CL:0002319;3.75e-17;25!CL:0000540;1.34e-11;6!CL:0000404;1.34e-11;6!CL:0000128;2.82e-10;7!CL:0000126;2.82e-10;7!CL:0000127;2.82e-10;7!CL:0002605;9.67e-10;3!CL:0002322;4.21e-08;5!CL:0000047;3.95e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.67e-17,25;CL:0000047,9.15e-17,8;CL:0000540,1.57e-11,6;CL:0000031,1.57e-11,6;CL:0000404,1.57e-11,6;CL:0000128,2.99e-10,7;CL:0000126,2.99e-10,7;CL:0000127,2.99e-10,7;CL:0002453,2.99e-10,7;CL:0000133,6.43e-10,59;CL:0002605,9.69e-10,3;CL:0002322,6.79e-08,5;CL:0000221,1.96e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.18e-12;82!CL:0000031;1.34e-11;6!UBERON:0006215;1.25e-08;3 | |ontology_enrichment_development_v019=UBERON:0006601;8.18e-12;82!CL:0000031;1.34e-11;6!UBERON:0006215;1.25e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.37e-74!82;UBERON:0005743!1.11e-71!86;UBERON:0000073!8.36e-71!94;UBERON:0001016!8.36e-71!94;UBERON:0001049!2.79e-64!57;UBERON:0005068!2.79e-64!57;UBERON:0006241!2.79e-64!57;UBERON:0007135!2.79e-64!57;UBERON:0000955!1.83e-58!69;UBERON:0006238!1.83e-58!69;UBERON:0002616!1.58e-55!59;UBERON:0002346!4.49e-49!90;UBERON:0003075!6.13e-47!86;UBERON:0007284!6.13e-47!86;UBERON:0000924!9.13e-46!173;UBERON:0006601!9.13e-46!173;UBERON:0002780!1.26e-45!41;UBERON:0001890!1.26e-45!41;UBERON:0006240!1.26e-45!41;UBERON:0003080!3.10e-44!42;UBERON:0004121!1.30e-43!169;UBERON:0000033!3.76e-41!123;UBERON:0000153!1.12e-40!129;UBERON:0007811!1.12e-40!129;UBERON:0001893!3.19e-37!34;UBERON:0002020!3.45e-37!34;UBERON:0003528!3.45e-37!34;UBERON:0002791!5.89e-36!33;UBERON:0001869!2.20e-34!32;UBERON:0003056!4.37e-33!61;UBERON:0007023!3.02e-26!115;UBERON:0000956!1.79e-25!25;UBERON:0000203!1.79e-25!25;UBERON:0002619!3.47e-21!22;UBERON:0001950!6.09e-21!20;UBERON:0003076!1.46e-20!15;UBERON:0003057!1.46e-20!15;UBERON:0004733!1.42e-16!12;UBERON:0002028!1.42e-16!12;UBERON:0007277!1.42e-16!12;UBERON:0004732!5.05e-15!13;UBERON:0002308!2.98e-13!9;UBERON:0000125!2.98e-13!9;UBERON:0002680!8.10e-13!9;UBERON:0001895!8.10e-13!9;UBERON:0010092!8.10e-13!9;UBERON:0000025!1.38e-11!194;UBERON:0000475!4.24e-11!365;UBERON:0009663!1.23e-10!7;UBERON:0002420!1.30e-10!9;UBERON:0007245!1.30e-10!9;UBERON:0010009!1.30e-10!9;UBERON:0010011!1.30e-10!9;UBERON:0000454!1.30e-10!9;UBERON:0004111!1.65e-10!241;UBERON:0000922!4.20e-10!612;UBERON:0000064!4.41e-10!219;UBERON:0001894!1.09e-09!7;UBERON:0006222!1.09e-09!7;UBERON:0000200!1.84e-09!6;UBERON:0002037!4.55e-09!6;UBERON:0006215!4.55e-09!6;UBERON:0002298!4.96e-09!8;UBERON:0000477!1.22e-08!286;UBERON:0000468!2.39e-08!659;UBERON:0001872!5.59e-08!5;UBERON:0002050!1.11e-07!605;UBERON:0005423!1.11e-07!605;UBERON:0000923!2.41e-07!604;UBERON:0005291!2.41e-07!604;UBERON:0006598!2.41e-07!604;UBERON:0002532!2.41e-07!604;UBERON:0001871!3.61e-07!7 | |ontology_enrichment_uberon=UBERON:0001017!4.37e-74!82;UBERON:0005743!1.11e-71!86;UBERON:0000073!8.36e-71!94;UBERON:0001016!8.36e-71!94;UBERON:0001049!2.79e-64!57;UBERON:0005068!2.79e-64!57;UBERON:0006241!2.79e-64!57;UBERON:0007135!2.79e-64!57;UBERON:0000955!1.83e-58!69;UBERON:0006238!1.83e-58!69;UBERON:0002616!1.58e-55!59;UBERON:0002346!4.49e-49!90;UBERON:0003075!6.13e-47!86;UBERON:0007284!6.13e-47!86;UBERON:0000924!9.13e-46!173;UBERON:0006601!9.13e-46!173;UBERON:0002780!1.26e-45!41;UBERON:0001890!1.26e-45!41;UBERON:0006240!1.26e-45!41;UBERON:0003080!3.10e-44!42;UBERON:0004121!1.30e-43!169;UBERON:0000033!3.76e-41!123;UBERON:0000153!1.12e-40!129;UBERON:0007811!1.12e-40!129;UBERON:0001893!3.19e-37!34;UBERON:0002020!3.45e-37!34;UBERON:0003528!3.45e-37!34;UBERON:0002791!5.89e-36!33;UBERON:0001869!2.20e-34!32;UBERON:0003056!4.37e-33!61;UBERON:0007023!3.02e-26!115;UBERON:0000956!1.79e-25!25;UBERON:0000203!1.79e-25!25;UBERON:0002619!3.47e-21!22;UBERON:0001950!6.09e-21!20;UBERON:0003076!1.46e-20!15;UBERON:0003057!1.46e-20!15;UBERON:0004733!1.42e-16!12;UBERON:0002028!1.42e-16!12;UBERON:0007277!1.42e-16!12;UBERON:0004732!5.05e-15!13;UBERON:0002308!2.98e-13!9;UBERON:0000125!2.98e-13!9;UBERON:0002680!8.10e-13!9;UBERON:0001895!8.10e-13!9;UBERON:0010092!8.10e-13!9;UBERON:0000025!1.38e-11!194;UBERON:0000475!4.24e-11!365;UBERON:0009663!1.23e-10!7;UBERON:0002420!1.30e-10!9;UBERON:0007245!1.30e-10!9;UBERON:0010009!1.30e-10!9;UBERON:0010011!1.30e-10!9;UBERON:0000454!1.30e-10!9;UBERON:0004111!1.65e-10!241;UBERON:0000922!4.20e-10!612;UBERON:0000064!4.41e-10!219;UBERON:0001894!1.09e-09!7;UBERON:0006222!1.09e-09!7;UBERON:0000200!1.84e-09!6;UBERON:0002037!4.55e-09!6;UBERON:0006215!4.55e-09!6;UBERON:0002298!4.96e-09!8;UBERON:0000477!1.22e-08!286;UBERON:0000468!2.39e-08!659;UBERON:0001872!5.59e-08!5;UBERON:0002050!1.11e-07!605;UBERON:0005423!1.11e-07!605;UBERON:0000923!2.41e-07!604;UBERON:0005291!2.41e-07!604;UBERON:0006598!2.41e-07!604;UBERON:0002532!2.41e-07!604;UBERON:0001871!3.61e-07!7 | ||
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|short_description=p3@SOX2 | |short_description=p3@SOX2 | ||
}} | }} |
Latest revision as of 22:08, 16 September 2015
Short description: | p3@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | -61bp_to_NM_003106_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.67e-17 | 25 |
neuronal stem cell | 9.15e-17 | 8 |
neuron | 1.57e-11 | 6 |
neuroblast | 1.57e-11 | 6 |
electrically signaling cell | 1.57e-11 | 6 |
oligodendrocyte | 2.99e-10 | 7 |
macroglial cell | 2.99e-10 | 7 |
astrocyte | 2.99e-10 | 7 |
oligodendrocyte precursor cell | 2.99e-10 | 7 |
neurectodermal cell | 6.43e-10 | 59 |
astrocyte of the cerebral cortex | 9.69e-10 | 3 |
embryonic stem cell | 6.79e-08 | 5 |
ectodermal cell | 1.96e-07 | 72 |