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MCL coexpression mm9:302

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:34307065..34307078,-p@chr11:34307065..34307078
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Mm9::chr11:98324735..98324746,-p@chr11:98324735..98324746
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Mm9::chr11:98325090..98325112,-p@chr11:98325090..98325112
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Mm9::chr11:98325155..98325164,-p@chr11:98325155..98325164
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Mm9::chr11:98325208..98325219,-p@chr11:98325208..98325219
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Mm9::chr11:98370187..98370202,-p@chr11:98370187..98370202
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Mm9::chr11:98396986..98396990,-p@chr11:98396986..98396990
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Mm9::chr13:24606810..24606813,+p@chr13:24606810..24606813
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Mm9::chr13:24610066..24610098,+p@chr13:24610066..24610098
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Mm9::chr13:41520348..41520362,-p@chr13:41520348..41520362
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Mm9::chr13:41520412..41520465,-p@chr13:41520412..41520465
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Mm9::chr13:41520496..41520515,-p@chr13:41520496..41520515
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Mm9::chr13:41520525..41520563,-p@chr13:41520525..41520563
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Mm9::chr13:41520609..41520625,-p@chr13:41520609..41520625
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Mm9::chr17:28359158..28359163,+p@chr17:28359158..28359163
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Mm9::chr17:47675588..47675602,+p@chr17:47675588..47675602
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Mm9::chr17:47675638..47675644,+p@chr17:47675638..47675644
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Mm9::chr17:47677674..47677686,+p@chr17:47677674..47677686
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Mm9::chr19:25131653..25131662,+p@chr19:25131653..25131662
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Mm9::chr2:22660265..22660288,+p@chr2:22660265..22660288
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Mm9::chr5:141412094..141412095,-p@chr5:141412094..141412095
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Mm9::chr5:141471722..141471740,-p@chr5:141471722..141471740
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Mm9::chr5:141471781..141471795,-p@chr5:141471781..141471795
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Mm9::chr6:120415890..120415900,+p@chr6:120415890..120415900
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Mm9::chr6:120415907..120415962,+p@chr6:120415907..120415962
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Mm9::chr6:48689867..48689876,+p@chr6:48689867..48689876
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Mm9::chr7:90790764..90790768,-p@chr7:90790764..90790768
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
hemopoietic organ3.38e-2529
immune organ3.38e-2529
hemolymphoid system3.13e-2248
immune system3.13e-2248
respiratory system3.43e-2242
gland of gut2.24e-2124
respiratory tract3.91e-2141
mixed endoderm/mesoderm-derived structure4.39e-2135
hematopoietic system5.77e-2145
blood island5.77e-2145
thymus2.94e-2023
neck2.94e-2023
respiratory system epithelium2.94e-2023
hemolymphoid system gland2.94e-2023
pharyngeal epithelium2.94e-2023
thymic region2.94e-2023
pharyngeal gland2.94e-2023
entire pharyngeal arch endoderm2.94e-2023
thymus primordium2.94e-2023
early pharyngeal endoderm2.94e-2023
pharynx3.85e-1924
upper respiratory tract3.85e-1924
chordate pharynx3.85e-1924
pharyngeal arch system3.85e-1924
pharyngeal region of foregut3.85e-1924
foregut2.65e-1780
segment of respiratory tract2.70e-1627
endo-epithelium6.82e-1469
lateral plate mesoderm1.28e-1387
digestive system1.67e-12116
digestive tract1.67e-12116
primitive gut1.67e-12116
organ segment2.15e-1235
subdivision of digestive tract3.46e-12114
endoderm-derived structure4.49e-12118
endoderm4.49e-12118
presumptive endoderm4.49e-12118
craniocervical region5.06e-1236
primordium1.48e-11134
organism subdivision2.54e-10150
mesoderm6.13e-10120
mesoderm-derived structure6.13e-10120
presumptive mesoderm6.13e-10120
endocrine gland3.03e-0960
gut epithelium3.93e-0955
anterior region of body4.71e-0943
gland7.57e-0965
endocrine system3.46e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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