FFCP PHASE1:Hg19::chr6:158438104..158438198,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8871|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11504|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc003qqy.1_5end|coexpression_cluster_id=C4|description=CAGE_peak_2_at_SYNJ2_5end|id=chr6:158438104..158438198,+|ontology_enrichment_celltype=CL:0002139!4.55e-11!24;CL:0000115!3.43e-09!35;CL:0002078!1.27e-07!44;CL:0000071!2.77e-07!18;CL:0002546!2.77e-07!18;CL:0000128!4.11e-07!7;CL:0000126!4.11e-07!7;CL:0000127!4.11e-07!7;CL:0002453!4.11e-07!7|ontology_enrichment_celltype_v019=CL:0002139;2.83e-10;24!CL:0000115;2.95e-09;36!CL:0000071;3.95e-07;18!CL:0000128;9.33e-07;7!CL:0000126;9.33e-07;7!CL:0000127;9.33e-07;7|ontology_enrichment_celltype_v019_2=CL:0002139,2.74e-10,24;CL:0000115,4.43e-10,36;CL:0002078,1.64e-09,45;CL:0000071,4.15e-07,18;CL:0002546,4.15e-07,18;CL:0000128,8.85e-07,7;CL:0000126,8.85e-07,7;CL:0000127,8.85e-07,7;CL:0002453,8.85e-07,7|ontology_enrichment_development_v019=UBERON:0006601;1.19e-11;82!CL:0002546;3.95e-07;18!UBERON:0006241;6.57e-07;3!UBERON:0003057;6.57e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.76e-40!57;UBERON:0005068!3.76e-40!57;UBERON:0006241!3.76e-40!57;UBERON:0007135!3.76e-40!57;UBERON:0001017!2.22e-38!82;UBERON:0005743!1.22e-36!86;UBERON:0003075!3.62e-36!86;UBERON:0007284!3.62e-36!86;UBERON:0002616!2.58e-35!59;UBERON:0002346!1.06e-34!90;UBERON:0000955!4.01e-34!69;UBERON:0006238!4.01e-34!69;UBERON:0000073!1.03e-33!94;UBERON:0001016!1.03e-33!94;UBERON:0007023!2.21e-33!115;UBERON:0001893!3.56e-30!34;UBERON:0002020!3.70e-30!34;UBERON:0003528!3.70e-30!34;UBERON:0002791!3.98e-29!33;UBERON:0002780!1.44e-28!41;UBERON:0001890!1.44e-28!41;UBERON:0006240!1.44e-28!41;UBERON:0001869!5.35e-28!32;UBERON:0003080!1.57e-27!42;UBERON:0000025!8.84e-27!194;UBERON:0000477!2.35e-25!286;UBERON:0004111!1.50e-24!241;UBERON:0003056!1.91e-24!61;UBERON:0000153!5.36e-23!129;UBERON:0007811!5.36e-23!129;UBERON:0000033!2.90e-22!123;UBERON:0000119!4.68e-22!312;UBERON:0000956!7.16e-22!25;UBERON:0000203!7.16e-22!25;UBERON:0000483!6.99e-21!309;UBERON:0002619!5.74e-20!22;UBERON:0004121!1.93e-19!169;UBERON:0000924!4.55e-19!173;UBERON:0006601!4.55e-19!173;UBERON:0001950!4.89e-18!20;UBERON:0000475!6.12e-15!365;UBERON:0003076!1.18e-13!15;UBERON:0003057!1.18e-13!15;UBERON:0000467!3.99e-12!625;UBERON:0000480!5.16e-12!626;UBERON:0004732!8.69e-12!13;UBERON:0000468!1.17e-11!659;UBERON:0004733!1.02e-10!12;UBERON:0002028!1.02e-10!12;UBERON:0007277!1.02e-10!12;UBERON:0000064!1.53e-10!219;UBERON:0000481!8.33e-10!347;UBERON:0002308!1.04e-09!9;UBERON:0000125!1.04e-09!9;UBERON:0002420!1.31e-09!9;UBERON:0007245!1.31e-09!9;UBERON:0010009!1.31e-09!9;UBERON:0010011!1.31e-09!9;UBERON:0000454!1.31e-09!9;UBERON:0002049!4.38e-09!79;UBERON:0007798!4.38e-09!79;UBERON:0004535!7.39e-09!110;UBERON:0001009!9.96e-09!113;UBERON:0004872!1.62e-08!84;UBERON:0009663!1.24e-07!7;UBERON:0002298!1.27e-07!8;UBERON:0002680!1.27e-07!9;UBERON:0001895!1.27e-07!9;UBERON:0010092!1.27e-07!9;UBERON:0000055!1.92e-07!69;UBERON:0000200!2.56e-07!6;UBERON:0001986!2.77e-07!18;UBERON:0004638!2.77e-07!18;UBERON:0004852!2.77e-07!18|ontology_enrichment_uberon_v019=UBERON:0001893;6.88e-33;34!UBERON:0003528;6.36e-32;34!UBERON:0002020;6.36e-32;34!UBERON:0002791;7.67e-31;32!UBERON:0001869;7.94e-31;32!UBERON:0000073;7.69e-30;53!UBERON:0002616;7.69e-30;53!UBERON:0002619;1.92e-27;22!UBERON:0000956;3.32e-26;25!UBERON:0000203;3.32e-26;25!UBERON:0002780;3.59e-26;41!UBERON:0001890;3.59e-26;41!UBERON:0001950;4.24e-24;20!UBERON:0001017;6.88e-24;75!UBERON:0001016;1.15e-20;83!UBERON:0000955;1.71e-20;68!UBERON:0004732;2.58e-20;13!UBERON:0004733;2.15e-18;12!UBERON:0002028;2.15e-18;12!UBERON:0000125;3.08e-13;9!UBERON:0002308;3.08e-13;9!UBERON:0002420;4.49e-13;9!UBERON:0007245;4.49e-13;9!UBERON:0010009;4.49e-13;9!UBERON:0010011;4.49e-13;9!UBERON:0000454;4.49e-13;9!UBERON:0002298;4.84e-13;6!UBERON:0002680;7.96e-13;9!UBERON:0001895;7.96e-13;9!UBERON:0000200;6.96e-12;6!UBERON:0000349;2.23e-10;5!UBERON:0009663;1.24e-09;7!UBERON:0007023;1.65e-08;114!UBERON:0010314;2.24e-08;132!UBERON:0000488;1.30e-07;4!UBERON:0011216;1.69e-07;132!UBERON:0002037;1.85e-07;6!UBERON:0001896;2.17e-07;3!UBERON:0005290;2.17e-07;3!UBERON:0000988;2.61e-07;3!UBERON:0001871;3.36e-07;6!UBERON:0004638;3.95e-07;18!UBERON:0001986;3.95e-07;18!UBERON:0004852;3.95e-07;18!UBERON:0006914;4.75e-07;25!UBERON:0007625;5.62e-07;11!UBERON:0001872;5.65e-07;5!UBERON:0002240;6.57e-07;3!UBERON:0005174;6.57e-07;3!UBERON:0001137;6.57e-07;3!UBERON:0002021;9.33e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.15e-60,56;UBERON:0005068,1.15e-60,56;UBERON:0006241,1.15e-60,56;UBERON:0007135,1.15e-60,56;UBERON:0001017,2.56e-58,81;UBERON:0003075,1.24e-55,82;UBERON:0007284,1.24e-55,82;UBERON:0001016,1.66e-55,89;UBERON:0000073,2.43e-55,53;UBERON:0002616,2.43e-55,53;UBERON:0002346,2.87e-52,86;UBERON:0000955,4.14e-51,68;UBERON:0006238,4.14e-51,68;UBERON:0010371,5.90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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8871 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11504 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003qqy.1_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_2_at_SYNJ2_5end | |||
|id=chr6:158438104..158438198,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.55e-11!24;CL:0000115!3.43e-09!35;CL:0002078!1.27e-07!44;CL:0000071!2.77e-07!18;CL:0002546!2.77e-07!18;CL:0000128!4.11e-07!7;CL:0000126!4.11e-07!7;CL:0000127!4.11e-07!7;CL:0002453!4.11e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.83e-10;24!CL:0000115;2.95e-09;36!CL:0000071;3.95e-07;18!CL:0000128;9.33e-07;7!CL:0000126;9.33e-07;7!CL:0000127;9.33e-07;7 | |||
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|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p2@SYNJ2 | |||
}} |
Revision as of 18:59, 13 September 2013
Short description: | p2@SYNJ2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SYNJ2_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 0bp_to_uc003qqy.1_5end |
EntrezGene: | SYNJ2 |
HGNC: | 11504 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.74e-10 | 24 |
endothelial cell | 4.43e-10 | 36 |
meso-epithelial cell | 1.64e-09 | 45 |
blood vessel endothelial cell | 4.15e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.15e-07 | 18 |
oligodendrocyte | 8.85e-07 | 7 |
macroglial cell | 8.85e-07 | 7 |
astrocyte | 8.85e-07 | 7 |
oligodendrocyte precursor cell | 8.85e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.