FFCP PHASE1:Mm9::chr17:28712697..28712717,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=328789|HGNC=|MCL_coexpression_id=47|UniProt=E9Q8H7,Q4KL25,B2RWL4|association_with_transcript=33bp_to_ENSMUST00000163218,NM_026571,uc008brg.2,uc012aoh.1_5end|description=CAGE_peak_1_at_Lhfpl5_5end|id=chr17:28712697..28712717,+|ontology_enrichment_celltype=CL:0000540!4.87e-10!33;CL:0000047!4.87e-10!33;CL:0000031!4.87e-10!33;CL:0000404!4.87e-10!33;CL:0000393!1.84e-07!39;CL:0000211!1.84e-07!39;CL:0000221!1.87e-07!44;CL:0000133!1.87e-07!44;CL:0000117!4.22e-07!23;CL:0000337!4.22e-07!23;CL:0002319!9.14e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.99e-19,23;CL:0000337,5.99e-19,23;CL:0000540,1.08e-15,33;CL:0000047,1.08e-15,33;CL:0000031,1.08e-15,33;CL:0000404,1.08e-15,33;CL:0002614,2.67e-15,3;CL:0002610,1.86e-14,3;CL:0000221,9.81e-14,44;CL:0000133,9.81e-14,44;CL:0000393,5.04e-13,39;CL:0000211,5.04e-13,39;CL:0002319,1.17e-11,43;CL:0000197,3.40e-11,2;CL:0002491,3.40e-11,2;CL:0000098,3.40e-11,2;CL:0002611,1.60e-10,2;CL:0002321,6.29e-08,70;CL:0002612,8.37e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.07e-21!102;UBERON:0000924!1.07e-21!102;UBERON:0006601!1.07e-21!102;UBERON:0001017!1.17e-18!73;UBERON:0005743!1.17e-18!73;UBERON:0000073!1.39e-18!75;UBERON:0001016!1.39e-18!75;UBERON:0002346!3.95e-17!71;UBERON:0003075!3.95e-17!71;UBERON:0007284!3.95e-17!71;UBERON:0001049!2.94e-14!52;UBERON:0005068!2.94e-14!52;UBERON:0006241!2.94e-14!52;UBERON:0007135!2.94e-14!52;UBERON:0000033!4.26e-14!63;UBERON:0000955!1.75e-12!50;UBERON:0006238!1.75e-12!50;UBERON:0002616!6.50e-12!49;UBERON:0003056!8.78e-09!49;UBERON:0003076!2.86e-08!12;UBERON:0003057!2.86e-08!12;UBERON:0007811!2.97e-08!86;UBERON:0003080!5.07e-08!40;UBERON:0002298!6.77e-08!6;UBERON:0002020!1.09e-07!34;UBERON:0002240!1.46e-07!6;UBERON:0005174!1.46e-07!6;UBERON:0001137!1.46e-07!6;UBERON:0002780!2.32e-07!39;UBERON:0001890!2.32e-07!39;UBERON:0006240!2.32e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0002950,3.16e-19,4;UBERON:0001891,3.16e-19,4;UBERON:0009616,3.16e-19,4;UBERON:0010286,3.16e-19,4;UBERON:0000073,2.96e-17,54;UBERON:0002038,2.67e-15,3;UBERON:0009663,2.67e-15,3;UBERON:0009661,2.67e-15,3;UBERON:0000125,2.67e-15,3;UBERON:0002308,2.67e-15,3;UBERON:0001948,5.94e-15,5;UBERON:0002315,5.94e-15,5;UBERON:0004684,1.86e-14,3;UBERON:0002275,1.86e-14,3;UBERON:0001017,3.71e-14,73;UBERON:0001016,1.03e-13,75;UBERON:0003076,2.28e-13,12;UBERON:0003057,2.28e-13,12;UBERON:0002240,1.69e-12,6;UBERON:0005174,1.69e-12,6;UBERON:0001137,1.69e-12,6;UBERON:0004121,6.02e-12,95;UBERON:0000924,6.02e-12,95;UBERON:0006601,6.02e-12,95;UBERON:0004766,3.40e-11,2;UBERON:0008193,3.40e-11,2;UBERON:0005913,3.40e-11,2;UBERON:0011158,3.40e-11,2;UBERON:0005744,3.40e-11,2;UBERON:0003457,3.40e-11,2;UBERON:0008001,3.40e-11,2;UBERON:0007497,3.40e-11,2;UBERON:0009955,3.40e-11,2;UBERON:0003067,3.40e-11,2;UBERON:0002546,3.40e-11,2;UBERON:0007914,3.40e-11,2;UBERON:0005253,3.40e-11,2;UBERON:0002227,3.40e-11,2;UBERON:0001846,3.40e-11,2;UBERON:0004339,3.40e-11,2;UBERON:0002105,3.40e-11,2;UBERON:0001678,3.40e-11,2;UBERON:0003128,3.40e-11,2;UBERON:0001694,3.40e-11,2;UBERON:0004681,3.40e-11,2;UBERON:0001839,3.40e-11,2;UBERON:0001690,3.40e-11,2;UBERON:0001844,3.40e-11,2;UBERON:0001849,3.40e-11,2;UBERON:0002499,3.40e-11,2;UBERON:0001855,3.40e-11,2;UBERON:0011137,3.40e-11,2;UBERON:0001703,3.40e-11,2;UBERON:0010323,3.40e-11,2;UBERON:0003129,3.40e-11,2;UBERON:0003069,3.40e-11,2;UBERON:0003051,3.40e-11,2;UBERON:0004637,3.40e-11,2;UBERON:0004761,3.40e-11,2;UBERON:0010113,3.40e-11,2;UBERON:0009123,3.40e-11,2;UBERON:0010351,3.40e-11,2;UBERON:0009617,3.40e-11,2;UBERON:0005641,3.40e-11,2;UBERON:0010349,3.40e-11,2;UBERON:0001049,3.53e-11,52;UBERON:0005068,3.53e-11,52;UBERON:0006241,3.53e-11,52;UBERON:0007135,3.53e-11,52;UBERON:0010371,1.30e-10,73;UBERON:0002256,1.60e-10,2;UBERON:0001896,4.22e-10,2;UBERON:0002298,4.22e-10,2;UBERON:0005290,4.22e-10,2;UBERON:0010096,4.22e-10,2;UBERON:0010314,2.86e-09,92;UBERON:0002346,9.96e-09,64;UBERON:0003075,9.96e-09,64;UBERON:0007284,9.96e-09,64;UBERON:0002257,8.37e-07,3|phase1_expression=46.2830168132855,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0,2.85650984403804,1.98781686856452,0,0,0,2.20231761998777,1.65993539510744,1.53606533256243,0.131886287730194,0.548925861614458,0,3.62937898701795,4.50210088025344,2.13917546887534,1.17851434189467,0.854230084794618,1.3047961207771,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,30.2813352519863,0,0,0,0,0,0,0,0,0.890652834388949,0.346970653532272,0,0.230615497256059,1.05505848386836,0.470354828542819,0,0,0,0,0,0,0,1.86391761218122,0.292780797011547,0.209446706813455,0.766371165625774,0,0,0,1.04853447583376,0.457500602818626,0.251308704225729,0.347648640384553,0.511430914660661,0.83115217823824,0.648965052271031,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.2562274405697,0.281105173679186,0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| ||
|EntrezGene=328789 | |||
|HGNC= | |||
|MCL_coexpression_id=47 | |||
|UniProt=E9Q8H7,Q4KL25,B2RWL4 | |||
|association_with_transcript=33bp_to_ENSMUST00000163218,NM_026571,uc008brg.2,uc012aoh.1_5end | |||
|description=CAGE_peak_1_at_Lhfpl5_5end | |||
|id=chr17:28712697..28712717,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.87e-10!33;CL:0000047!4.87e-10!33;CL:0000031!4.87e-10!33;CL:0000404!4.87e-10!33;CL:0000393!1.84e-07!39;CL:0000211!1.84e-07!39;CL:0000221!1.87e-07!44;CL:0000133!1.87e-07!44;CL:0000117!4.22e-07!23;CL:0000337!4.22e-07!23;CL:0002319!9.14e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.99e-19,23;CL:0000337,5.99e-19,23;CL:0000540,1.08e-15,33;CL:0000047,1.08e-15,33;CL:0000031,1.08e-15,33;CL:0000404,1.08e-15,33;CL:0002614,2.67e-15,3;CL:0002610,1.86e-14,3;CL:0000221,9.81e-14,44;CL:0000133,9.81e-14,44;CL:0000393,5.04e-13,39;CL:0000211,5.04e-13,39;CL:0002319,1.17e-11,43;CL:0000197,3.40e-11,2;CL:0002491,3.40e-11,2;CL:0000098,3.40e-11,2;CL:0002611,1.60e-10,2;CL:0002321,6.29e-08,70;CL:0002612,8.37e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.07e-21!102;UBERON:0000924!1.07e-21!102;UBERON:0006601!1.07e-21!102;UBERON:0001017!1.17e-18!73;UBERON:0005743!1.17e-18!73;UBERON:0000073!1.39e-18!75;UBERON:0001016!1.39e-18!75;UBERON:0002346!3.95e-17!71;UBERON:0003075!3.95e-17!71;UBERON:0007284!3.95e-17!71;UBERON:0001049!2.94e-14!52;UBERON:0005068!2.94e-14!52;UBERON:0006241!2.94e-14!52;UBERON:0007135!2.94e-14!52;UBERON:0000033!4.26e-14!63;UBERON:0000955!1.75e-12!50;UBERON:0006238!1.75e-12!50;UBERON:0002616!6.50e-12!49;UBERON:0003056!8.78e-09!49;UBERON:0003076!2.86e-08!12;UBERON:0003057!2.86e-08!12;UBERON:0007811!2.97e-08!86;UBERON:0003080!5.07e-08!40;UBERON:0002298!6.77e-08!6;UBERON:0002020!1.09e-07!34;UBERON:0002240!1.46e-07!6;UBERON:0005174!1.46e-07!6;UBERON:0001137!1.46e-07!6;UBERON:0002780!2.32e-07!39;UBERON:0001890!2.32e-07!39;UBERON:0006240!2.32e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002950,3.16e-19,4;UBERON:0001891,3.16e-19,4;UBERON:0009616,3.16e-19,4;UBERON:0010286,3.16e-19,4;UBERON:0000073,2.96e-17,54;UBERON:0002038,2.67e-15,3;UBERON:0009663,2.67e-15,3;UBERON:0009661,2.67e-15,3;UBERON:0000125,2.67e-15,3;UBERON:0002308,2.67e-15,3;UBERON:0001948,5.94e-15,5;UBERON:0002315,5.94e-15,5;UBERON:0004684,1.86e-14,3;UBERON:0002275,1.86e-14,3;UBERON:0001017,3.71e-14,73;UBERON:0001016,1.03e-13,75;UBERON:0003076,2.28e-13,12;UBERON:0003057,2.28e-13,12;UBERON:0002240,1.69e-12,6;UBERON:0005174,1.69e-12,6;UBERON:0001137,1.69e-12,6;UBERON:0004121,6.02e-12,95;UBERON:0000924,6.02e-12,95;UBERON:0006601,6.02e-12,95;UBERON:0004766,3.40e-11,2;UBERON:0008193,3.40e-11,2;UBERON:0005913,3.40e-11,2;UBERON:0011158,3.40e-11,2;UBERON:0005744,3.40e-11,2;UBERON:0003457,3.40e-11,2;UBERON:0008001,3.40e-11,2;UBERON:0007497,3.40e-11,2;UBERON:0009955,3.40e-11,2;UBERON:0003067,3.40e-11,2;UBERON:0002546,3.40e-11,2;UBERON:0007914,3.40e-11,2;UBERON:0005253,3.40e-11,2;UBERON:0002227,3.40e-11,2;UBERON:0001846,3.40e-11,2;UBERON:0004339,3.40e-11,2;UBERON:0002105,3.40e-11,2;UBERON:0001678,3.40e-11,2;UBERON:0003128,3.40e-11,2;UBERON:0001694,3.40e-11,2;UBERON:0004681,3.40e-11,2;UBERON:0001839,3.40e-11,2;UBERON:0001690,3.40e-11,2;UBERON:0001844,3.40e-11,2;UBERON:0001849,3.40e-11,2;UBERON:0002499,3.40e-11,2;UBERON:0001855,3.40e-11,2;UBERON:0011137,3.40e-11,2;UBERON:0001703,3.40e-11,2;UBERON:0010323,3.40e-11,2;UBERON:0003129,3.40e-11,2;UBERON:0003069,3.40e-11,2;UBERON:0003051,3.40e-11,2;UBERON:0004637,3.40e-11,2;UBERON:0004761,3.40e-11,2;UBERON:0010113,3.40e-11,2;UBERON:0009123,3.40e-11,2;UBERON:0010351,3.40e-11,2;UBERON:0009617,3.40e-11,2;UBERON:0005641,3.40e-11,2;UBERON:0010349,3.40e-11,2;UBERON:0001049,3.53e-11,52;UBERON:0005068,3.53e-11,52;UBERON:0006241,3.53e-11,52;UBERON:0007135,3.53e-11,52;UBERON:0010371,1.30e-10,73;UBERON:0002256,1.60e-10,2;UBERON:0001896,4.22e-10,2;UBERON:0002298,4.22e-10,2;UBERON:0005290,4.22e-10,2;UBERON:0010096,4.22e-10,2;UBERON:0010314,2.86e-09,92;UBERON:0002346,9.96e-09,64;UBERON:0003075,9.96e-09,64;UBERON:0007284,9.96e-09,64;UBERON:0002257,8.37e-07,3 | |||
|phase1_expression=46.2830168132855,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.17008658030214,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0,0,0,0,0,0,0,0,0,0,0,2.85650984403804,1.98781686856452,0,0,0,2.20231761998777,1.65993539510744,1.53606533256243,0.131886287730194,0.548925861614458,0,3.62937898701795,4.50210088025344,2.13917546887534,1.17851434189467,0.854230084794618,1.3047961207771,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,30.2813352519863,0,0,0,0,0,0,0,0,0.890652834388949,0.346970653532272,0,0.230615497256059,1.05505848386836,0.470354828542819,0,0,0,0,0,0,0,1.86391761218122,0.292780797011547,0.209446706813455,0.766371165625774,0,0,0,1.04853447583376,0.457500602818626,0.251308704225729,0.347648640384553,0.511430914660661,0.83115217823824,0.648965052271031,0,0,0,0,0,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0.264450566663544,0,0,0.128867461322093,0.201683524623343,0,0,0,0,0,0.198956472041151,0,0.898819408654221,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,1.60550589987792,1.75817529888305,0,0,0,0,0.215423397732799,0,0.668396022247182,0.566153061577665,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632073515871632,0,0,5.44703369206061,0,0,0,0.354680467284547,0.178368817602071,0.658196082408484,3.04464949114599,0,0,0.220528398054962,0,0,0.0603129249281559,0.119372344003136,0.164140899745061,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0.436725127492355,0.134864346384821,0.495920734352016,0.785267825952089,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0.572895513439397,0.343706364687375,0,0,0.675022500231806,0.45032120322422,0,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0.25347929989024,0,0.187283014939765,0.128050304809739,0.114870937911227,0,0.231768651889711,0.578727661391115,0,0.294397840268795,0.342869252385415,0,0,0.436039249896986,0,0.0846146078916765,0.182927972872773,0,0,0,0,0.197008964751127,0.409231043169689,0,0,0.749431733813838,0,0.214871054048298,0.191288332068843,0.220591419119515,0 | |||
|short_description=p1@Lhfpl5 | |||
}} |
Revision as of 13:57, 13 September 2013
Short description: | p1@Lhfpl5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lhfpl5_5end |
Coexpression cluster: | MCL_coexpression_mm9:47 |
Association with transcript: | 33bp_to_ENSMUST00000163218, NM_026571, uc008brg.2, uc012aoh.1_5end |
EntrezGene: | Lhfpl5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.99e-19 | 23 |
neuroblast (sensu Vertebrata) | 5.99e-19 | 23 |
neuron | 1.08e-15 | 33 |
neuronal stem cell | 1.08e-15 | 33 |
neuroblast | 1.08e-15 | 33 |
electrically signaling cell | 1.08e-15 | 33 |
neuron of the substantia nigra | 2.67e-15 | 3 |
raphe nuclei neuron | 1.86e-14 | 3 |
ectodermal cell | 9.81e-14 | 44 |
neurectodermal cell | 9.81e-14 | 44 |
electrically responsive cell | 5.04e-13 | 39 |
electrically active cell | 5.04e-13 | 39 |
neural cell | 1.17e-11 | 43 |
receptor cell | 3.40e-11 | 2 |
auditory epithelial cell | 3.40e-11 | 2 |
sensory epithelial cell | 3.40e-11 | 2 |
neuron of the dorsal spinal cord | 1.60e-10 | 2 |
embryonic cell | 6.29e-08 | 70 |
neuron of the ventral spinal cord | 8.37e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.