FFCP PHASE1:Hg19::chr5:140864581..140864634,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56098 | |EntrezGene=56098 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8717 | |HGNC=8717 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5F7,A4FU17 | |UniProt=Q9Y5F7,A4FU17 | ||
|association_with_transcript=-106bp_to_ENST00000306593,NM_018928,NM_032406,uc003lky.1,uc011dbb.1_5end | |association_with_transcript=-106bp_to_ENST00000306593,NM_018928,NM_032406,uc003lky.1,uc011dbb.1_5end | ||
|cluster_id=chr5:140864581..140864634,+ | |||
|coexpression_cluster_id=C10 | |coexpression_cluster_id=C10 | ||
|description=CAGE_peak_1_at_PCDHGC4_5end | |description=CAGE_peak_1_at_PCDHGC4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000047!3.01e-07!8 | |ontology_enrichment_celltype=CL:0000047!3.01e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002319;8.52e-12;25!CL:0000128;4.39e-08;7!CL:0000126;4.39e-08;7!CL:0000127;4.39e-08;7!CL:0002605;4.91e-08;3!CL:0000540;9.60e-07;6!CL:0000404;9.60e-07;6 | |ontology_enrichment_celltype_v019=CL:0002319;8.52e-12;25!CL:0000128;4.39e-08;7!CL:0000126;4.39e-08;7!CL:0000127;4.39e-08;7!CL:0002605;4.91e-08;3!CL:0000540;9.60e-07;6!CL:0000404;9.60e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.64e-12,25;CL:0000047,6.82e-11,8;CL:0000128,3.42e-08,7;CL:0000126,3.42e-08,7;CL:0000127,3.42e-08,7;CL:0002453,3.42e-08,7;CL:0002605,5.28e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.51e-15;82!UBERON:0006215;6.89e-09;3!UBERON:0006241;2.22e-07;3!UBERON:0003057;2.22e-07;3!CL:0000031;9.60e-07;6 | |ontology_enrichment_development_v019=UBERON:0006601;2.51e-15;82!UBERON:0006215;6.89e-09;3!UBERON:0006241;2.22e-07;3!UBERON:0003057;2.22e-07;3!CL:0000031;9.60e-07;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.02e-54!86;UBERON:0001049!2.45e-52!57;UBERON:0005068!2.45e-52!57;UBERON:0006241!2.45e-52!57;UBERON:0007135!2.45e-52!57;UBERON:0001017!5.44e-51!82;UBERON:0000073!1.88e-46!94;UBERON:0001016!1.88e-46!94;UBERON:0002346!1.59e-45!90;UBERON:0003075!1.86e-45!86;UBERON:0007284!1.86e-45!86;UBERON:0002616!3.45e-45!59;UBERON:0000955!1.99e-40!69;UBERON:0006238!1.99e-40!69;UBERON:0002780!2.11e-38!41;UBERON:0001890!2.11e-38!41;UBERON:0006240!2.11e-38!41;UBERON:0003080!4.20e-37!42;UBERON:0003056!6.15e-35!61;UBERON:0000033!2.15e-34!123;UBERON:0001893!2.48e-34!34;UBERON:0002020!3.87e-34!34;UBERON:0003528!3.87e-34!34;UBERON:0000924!7.76e-34!173;UBERON:0006601!7.76e-34!173;UBERON:0000153!2.56e-33!129;UBERON:0007811!2.56e-33!129;UBERON:0004121!3.21e-33!169;UBERON:0002791!3.30e-33!33;UBERON:0001869!1.26e-32!32;UBERON:0000956!5.10e-26!25;UBERON:0000203!5.10e-26!25;UBERON:0002619!5.84e-23!22;UBERON:0001950!3.02e-21!20;UBERON:0007023!3.00e-19!115;UBERON:0000475!3.01e-16!365;UBERON:0003076!6.57e-16!15;UBERON:0003057!6.57e-16!15;UBERON:0000119!1.04e-15!312;UBERON:0000483!3.89e-15!309;UBERON:0000064!1.20e-13!219;UBERON:0004733!3.18e-13!12;UBERON:0002028!3.18e-13!12;UBERON:0007277!3.18e-13!12;UBERON:0000025!4.18e-13!194;UBERON:0004732!7.13e-12!13;UBERON:0000481!8.46e-12!347;UBERON:0000922!4.43e-11!612;UBERON:0000477!2.16e-10!286;UBERON:0002680!2.27e-10!9;UBERON:0001895!2.27e-10!9;UBERON:0010092!2.27e-10!9;UBERON:0004111!6.47e-10!241;UBERON:0002420!1.05e-09!9;UBERON:0007245!1.05e-09!9;UBERON:0010009!1.05e-09!9;UBERON:0010011!1.05e-09!9;UBERON:0000454!1.05e-09!9;UBERON:0002308!1.73e-09!9;UBERON:0000125!1.73e-09!9;UBERON:0000468!2.11e-09!659;UBERON:0002050!1.05e-08!605;UBERON:0005423!1.05e-08!605;UBERON:0000923!2.40e-08!604;UBERON:0005291!2.40e-08!604;UBERON:0006598!2.40e-08!604;UBERON:0002532!2.40e-08!604;UBERON:0000200!8.59e-08!6;UBERON:0000467!8.64e-08!625;UBERON:0000480!1.05e-07!626;UBERON:0009663!1.10e-07!7;UBERON:0002037!1.72e-07!6;UBERON:0006215!1.72e-07!6;UBERON:0001871!1.80e-07!7;UBERON:0001872!5.83e-07!5;UBERON:0002021!6.93e-07!5;UBERON:0002298!7.73e-07!8 | |ontology_enrichment_uberon=UBERON:0005743!3.02e-54!86;UBERON:0001049!2.45e-52!57;UBERON:0005068!2.45e-52!57;UBERON:0006241!2.45e-52!57;UBERON:0007135!2.45e-52!57;UBERON:0001017!5.44e-51!82;UBERON:0000073!1.88e-46!94;UBERON:0001016!1.88e-46!94;UBERON:0002346!1.59e-45!90;UBERON:0003075!1.86e-45!86;UBERON:0007284!1.86e-45!86;UBERON:0002616!3.45e-45!59;UBERON:0000955!1.99e-40!69;UBERON:0006238!1.99e-40!69;UBERON:0002780!2.11e-38!41;UBERON:0001890!2.11e-38!41;UBERON:0006240!2.11e-38!41;UBERON:0003080!4.20e-37!42;UBERON:0003056!6.15e-35!61;UBERON:0000033!2.15e-34!123;UBERON:0001893!2.48e-34!34;UBERON:0002020!3.87e-34!34;UBERON:0003528!3.87e-34!34;UBERON:0000924!7.76e-34!173;UBERON:0006601!7.76e-34!173;UBERON:0000153!2.56e-33!129;UBERON:0007811!2.56e-33!129;UBERON:0004121!3.21e-33!169;UBERON:0002791!3.30e-33!33;UBERON:0001869!1.26e-32!32;UBERON:0000956!5.10e-26!25;UBERON:0000203!5.10e-26!25;UBERON:0002619!5.84e-23!22;UBERON:0001950!3.02e-21!20;UBERON:0007023!3.00e-19!115;UBERON:0000475!3.01e-16!365;UBERON:0003076!6.57e-16!15;UBERON:0003057!6.57e-16!15;UBERON:0000119!1.04e-15!312;UBERON:0000483!3.89e-15!309;UBERON:0000064!1.20e-13!219;UBERON:0004733!3.18e-13!12;UBERON:0002028!3.18e-13!12;UBERON:0007277!3.18e-13!12;UBERON:0000025!4.18e-13!194;UBERON:0004732!7.13e-12!13;UBERON:0000481!8.46e-12!347;UBERON:0000922!4.43e-11!612;UBERON:0000477!2.16e-10!286;UBERON:0002680!2.27e-10!9;UBERON:0001895!2.27e-10!9;UBERON:0010092!2.27e-10!9;UBERON:0004111!6.47e-10!241;UBERON:0002420!1.05e-09!9;UBERON:0007245!1.05e-09!9;UBERON:0010009!1.05e-09!9;UBERON:0010011!1.05e-09!9;UBERON:0000454!1.05e-09!9;UBERON:0002308!1.73e-09!9;UBERON:0000125!1.73e-09!9;UBERON:0000468!2.11e-09!659;UBERON:0002050!1.05e-08!605;UBERON:0005423!1.05e-08!605;UBERON:0000923!2.40e-08!604;UBERON:0005291!2.40e-08!604;UBERON:0006598!2.40e-08!604;UBERON:0002532!2.40e-08!604;UBERON:0000200!8.59e-08!6;UBERON:0000467!8.64e-08!625;UBERON:0000480!1.05e-07!626;UBERON:0009663!1.10e-07!7;UBERON:0002037!1.72e-07!6;UBERON:0006215!1.72e-07!6;UBERON:0001871!1.80e-07!7;UBERON:0001872!5.83e-07!5;UBERON:0002021!6.93e-07!5;UBERON:0002298!7.73e-07!8 | ||
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| ||
|short_description=p1@PCDHGC4 | |short_description=p1@PCDHGC4 | ||
}} | }} |
Latest revision as of 04:35, 25 September 2015
Short description: | p1@PCDHGC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCDHGC4_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -106bp_to_ENST00000306593, NM_018928, NM_032406, uc003lky.1, uc011dbb.1_5end |
EntrezGene: | PCDHGC4 |
HGNC: | 8717 |
UniProt: | Q9Y5F7A4FU17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.64e-12 | 25 |
neuronal stem cell | 6.82e-11 | 8 |
oligodendrocyte | 3.42e-08 | 7 |
macroglial cell | 3.42e-08 | 7 |
astrocyte | 3.42e-08 | 7 |
oligodendrocyte precursor cell | 3.42e-08 | 7 |
astrocyte of the cerebral cortex | 5.28e-08 | 3 |