FFCP PHASE1:Hg19::chr20:45280091..45280105,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14430 | |||
|TSSclassifier=strong | |||
|UniProt=B4DIR8,B4E181,B4DF27,Q8WWT9 | |||
|association_with_transcript=0bp_to_ENST00000339636,ENST00000372121,ENST00000396360,ENST00000413164,ENST00000435032,NM_001193339,NM_001193342,NM_022829,uc002xsf.1,uc010zxw.1,uc010zxx.1_5end | |||
|coexpression_cluster_id=C51 | |||
|description=CAGE_peak_1_at_SLC13A3_5end | |||
|id=chr20:45280091..45280105,- | |||
|ontology_enrichment_celltype=CL:0000181!8.84e-08!12;CL:0000417!8.84e-08!12;CL:0000668!8.84e-08!12;CL:0000414!8.84e-08!12;CL:0000412!8.84e-08!12;CL:0000182!8.84e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.67e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.68e-09,12;CL:0002586,9.83e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.82e-16;82!UBERON:0006241;2.59e-08;3!UBERON:0003057;2.59e-08;3!UBERON:0004161;1.89e-07;11!UBERON:0006215;4.40e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.48e-64!86;UBERON:0001049!1.83e-63!57;UBERON:0005068!1.83e-63!57;UBERON:0006241!1.83e-63!57;UBERON:0007135!1.83e-63!57;UBERON:0001017!3.56e-59!82;UBERON:0000073!1.50e-58!94;UBERON:0001016!1.50e-58!94;UBERON:0002616!3.27e-57!59;UBERON:0003075!1.04e-52!86;UBERON:0007284!1.04e-52!86;UBERON:0000955!5.30e-52!69;UBERON:0006238!5.30e-52!69;UBERON:0002780!7.52e-52!41;UBERON:0001890!7.52e-52!41;UBERON:0006240!7.52e-52!41;UBERON:0003080!2.66e-50!42;UBERON:0002346!1.82e-49!90;UBERON:0007023!3.59e-49!115;UBERON:0001893!7.27e-43!34;UBERON:0002020!8.39e-43!34;UBERON:0003528!8.39e-43!34;UBERON:0002791!1.79e-41!33;UBERON:0003056!4.68e-40!61;UBERON:0001869!1.07e-39!32;UBERON:0000033!3.52e-32!123;UBERON:0000153!5.71e-31!129;UBERON:0007811!5.71e-31!129;UBERON:0000956!2.79e-30!25;UBERON:0000203!2.79e-30!25;UBERON:0002619!3.31e-30!22;UBERON:0004121!5.43e-29!169;UBERON:0001950!7.81e-28!20;UBERON:0000924!8.16e-28!173;UBERON:0006601!8.16e-28!173;UBERON:0000025!1.61e-20!194;UBERON:0004111!5.89e-15!241;UBERON:0003076!6.89e-14!15;UBERON:0003057!6.89e-14!15;UBERON:0002308!6.96e-14!9;UBERON:0000125!6.96e-14!9;UBERON:0002420!2.90e-13!9;UBERON:0007245!2.90e-13!9;UBERON:0010009!2.90e-13!9;UBERON:0010011!2.90e-13!9;UBERON:0000454!2.90e-13!9;UBERON:0000477!4.07e-12!286;UBERON:0000119!8.31e-12!312;UBERON:0000475!9.17e-12!365;UBERON:0000483!1.31e-11!309;UBERON:0004732!3.41e-11!13;UBERON:0001871!3.65e-11!7;UBERON:0009663!4.90e-11!7;UBERON:0001894!3.42e-10!7;UBERON:0006222!3.42e-10!7;UBERON:0002298!5.01e-10!8;UBERON:0004733!9.08e-10!12;UBERON:0002028!9.08e-10!12;UBERON:0007277!9.08e-10!12;UBERON:0000200!4.32e-09!6;UBERON:0000481!1.00e-08!347;UBERON:0000062!3.55e-08!511;UBERON:0002368!4.07e-08!35;UBERON:0001872!4.12e-08!5;UBERON:0002021!4.58e-08!5;UBERON:0002107!5.85e-08!19;UBERON:0006925!5.85e-08!19;UBERON:0008836!5.85e-08!19;UBERON:0000349!1.68e-07!5;UBERON:0000064!2.72e-07!219;UBERON:0000949!4.30e-07!45;UBERON:0000922!8.23e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.13e-47;34!UBERON:0003528;1.99e-47;34!UBERON:0002020;1.99e-47;34!UBERON:0002780;2.60e-47;41!UBERON:0001890;2.60e-47;41!UBERON:0002791;9.00e-47;32!UBERON:0001869;1.35e-46;32!UBERON:0000073;1.76e-44;53!UBERON:0002616;1.76e-44;53!UBERON:0002619;5.24e-44;22!UBERON:0001950;1.83e-40;20!UBERON:0000956;3.79e-38;25!UBERON:0000203;3.79e-38;25!UBERON:0001017;3.03e-30;75!UBERON:0000955;3.84e-29;68!UBERON:0001016;7.39e-26;83!UBERON:0000125;8.01e-20;9!UBERON:0002308;8.01e-20;9!UBERON:0002420;7.77e-19;9!UBERON:0007245;7.77e-19;9!UBERON:0010009;7.77e-19;9!UBERON:0010011;7.77e-19;9!UBERON:0000454;7.77e-19;9!UBERON:0004732;2.10e-16;13!UBERON:0009663;1.39e-15;7!UBERON:0007023;5.73e-15;114!UBERON:0002298;2.64e-14;6!UBERON:0004733;2.83e-14;12!UBERON:0002028;2.83e-14;12!UBERON:0001871;5.13e-14;6!UBERON:0000200;1.03e-12;6!UBERON:0001872;2.87e-11;5!UBERON:0002021;3.66e-11;5!UBERON:0001894;5.03e-11;7!UBERON:0000349;2.44e-10;5!UBERON:0011216;5.74e-10;132!UBERON:0002784;3.24e-09;4!UBERON:0000369;6.45e-09;4!UBERON:0002435;6.45e-09;4!UBERON:0000204;6.45e-09;4!UBERON:0002680;1.05e-08;9!UBERON:0001895;1.05e-08;9!UBERON:0002107;1.24e-08;19!UBERON:0006925;1.24e-08;19!UBERON:0010314;1.63e-08;132!UBERON:0002240;2.59e-08;3!UBERON:0005174;2.59e-08;3!UBERON:0001137;2.59e-08;3!UBERON:0000988;4.63e-08;3!UBERON:0001896;6.42e-08;3!UBERON:0005290;6.42e-08;3!UBERON:0002368;1.88e-07;33!UBERON:0000966;3.95e-07;5!UBERON:0005388;3.95e-07;5!UBERON:0001802;3.95e-07;5!UBERON:0001870;4.50e-07;3!UBERON:0005383;5.46e-07;3!UBERON:0005382;5.46e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.77e-87,56;UBERON:0005068,9.77e-87,56;UBERON:0006241,9.77e-87,56;UBERON:0007135,9.77e-87,56;UBERON:0000073,7.51e-80,53;UBERON:0002616,7.51e-80,53;UBERON:0001017,3.42e-71,81;UBERON:0000955,5.40e-70,68;UBERON:0006238,5.40e-70,68;UBERON:0003075,1.50e-68,82;UBERON:0007284,1.50e-68,82;UBERON:0002780,2.04e-66,41;UBERON:0001890,2.04e-66,41;UBERON:0003080,2.04e-66,41;UBERON:0006240,2.04e-66,41;UBERON:0001016,1.40e-65,89;UBERON:0002346,1.11e-64,86;UBERON:0001893,1.50e-56,34;UBERON:0003528,1.83e-56,34;UBERON:0002020,1.83e-56,34;UBERON:0003056,6.37e-55,61;UBERON:0002791,3.60e-52,32;UBERON:0001869,6.28e-52,32;UBERON:0010371,6.39e-51,104;UBERON:0007023,1.88e-46,114;UBERON:0002619,5.25e-44,22;UBERON:0010314,5.25e-42,132;UBERON:0001950,1.76e-40,20;UBERON:0000956,3.79e-38,25;UBERON:0000203,3.79e-38,25;UBERON:0004121,1.40e-32,171;UBERON:0000924,1.40e-32,171;UBERON:0006601,1.40e-32,171;UBERON:0011216,1.12e-29,223;UBERON:0000025,6.29e-27,192;UBERON:0003076,2.07e-20,15;UBERON:0003057,2.07e-20,15;UBERON:0000125,8.77e-20,9;UBERON:0002308,8.77e-20,9;UBERON:0002420,7.27e-19,9;UBERON:0007245,7.27e-19,9;UBERON:0010009,7.27e-19,9;UBERON:0010011,7.27e-19,9;UBERON:0000454,7.27e-19,9;UBERON:0004111,2.01e-18,240;UBERON:0004732,2.15e-16,13;UBERON:0000483,1.32e-15,306;UBERON:0009663,1.44e-15,7;UBERON:0000119,2.71e-15,309;UBERON:0002298,2.83e-14,6;UBERON:0004733,2.90e-14,12;UBERON:0002028,2.90e-14,12;UBERON:0007277,2.90e-14,12;UBERON:0001871,5.24e-14,6;UBERON:0000200,1.08e-12,6;UBERON:0001872,3.00e-11,5;UBERON:0002021,3.51e-11,5;UBERON:0001894,5.36e-11,7;UBERON:0006222,5.36e-11,7;UBERON:0000349,2.39e-10,5;UBERON:0000966,2.37e-09,6;UBERON:0005388,2.37e-09,6;UBERON:0001802,2.37e-09,6;UBERON:0002784,3.50e-09,4;UBERON:0001781,4.46e-09,4;UBERON:0000369,6.59e-09,4;UBERON:0002435,6.59e-09,4;UBERON:0000204,6.59e-09,4;UBERON:0010082,6.59e-09,4;UBERON:0002680,1.08e-08,9;UBERON:0001895,1.08e-08,9;UBERON:0010092,1.08e-08,9;UBERON:0002107,1.24e-08,19;UBERON:0006925,1.24e-08,19;UBERON:0008836,1.24e-08,19;UBERON:0002240,2.56e-08,3;UBERON:0005174,2.56e-08,3;UBERON:0001137,2.56e-08,3;UBERON:0000988,4.97e-08,3;UBERON:0001896,6.42e-08,3;UBERON:0005290,6.42e-08,3;UBERON:0010096,6.42e-08,3;UBERON:0002368,6.47e-08,35;UBERON:0008835,3.36e-07,22;UBERON:0003894,3.36e-07,22;UBERON:0001870,4.45e-07,3;UBERON:0005383,5.41e-07,3;UBERON:0005382,5.41e-07,3;UBERON:0009854,8.28e-07,23;UBERON:0001782,9.83e-07,3;UBERON:0005424,9.83e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,189.002805943199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.530119073285941,0.69716365721711,0.10366105501537,0.756962552626885,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,6.33775174109154,19.6565443335525,26.5855458006632,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61727252471503,0.871533458600294,3.69900067373611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.9292951529988,63.8246768288192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.92415337814251,4.59220503979588,3.90454073597164,18.4443410849423,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.95453390975468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,20.9940675732218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,4.97073823883149,3.93874365949436,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,10.6626602070474,12.1526208592025,0,0,0,0,0,0,0,0,0,0,13.2861207872076,4.5826646677655,15.2581736317083,1.99042667876204,7.09314285488514,26.5456330556307,0,0,0,0,6.68635322725374,8.07818799687949,16.7316952759892,1.27600463892768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,54.5275165813677,0.802577647298789,15.6957178635977,0,0,0,0,1.20990716048664,10.7125466570672,8.97249430724529,0,0,0,0,0,0,0.284609546029793,0,0,0,0,1.39781334593624,0,0,0,0,0.0969890164884194,0,4.51961481561065,0,0,10.8894569044111,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,31.2218550129091,27.5179811572906,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0.335917362433631,0,33.7838253629616,40.494555705913,39.0651168726729,41.1161617510528,0,0,7.15706720828373,4.35850899557042,0.160753148465019,0.687697182986169,0.83088067605837,0,0,7.53294502559506,0,504.514138129467,88.7007085362818,0,0,0,0,0,0,0,0,0,0,0,0,0,9.96555189010961,5.30027555648885,28.3129674431796,14.0166557847251,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,6.2024772597689,9.39602239745116,6.38473746603149,14.3352298922518,14.6426348028645,22.7272834765463,0.691743174681154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0.761610424337591,0,0,0.107410557042488,0,0,0,0,0,0,0,1.07220795687463,0,0,0,0,0,1.23520578864389,0,0,0,0,0,0,0,6.08337119067615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0197591150477,8.5017945795351,8.14132681191471,12.7172145829268,7.31007919042983,13.2090352206656,8.39673357285626,85.6616521554926,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,14.6667748909597,0,0,12.7646034928766,12.4972495778216,7.02735108104026,15.9173683586706,7.11067251723685,0,0,0,0,3.74991285114801,1.00885116665647,5.46269043812968,0.455324382702595,28.4734608222071,0,0.171488009437418,19.6432528303044,11.8390992413128,0,0,0,4.55635210756405,0,0,0,0,32.5933041445553,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1576732780005,14.5552736160272,43.9561956686736,0,0,0.0644578879735772,0,0,0,0,0,0,34.1148207900454,0,12.3064597245556,16.144975542594,0,0,0,0,0.378499274505237,0,0.633492505057185,0.203977659483963,0.26721740526556,0,0,0.0757786982182394,0.267964130156178,33.99594701781,21.9277951227218,0,0.714193294391221,0,0,0,0,0.202117188958219,0.217716747896961,0.342233301085281,0.0673520530145875,0.430333232356058,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p1@SLC13A3 | |||
}} |
Revision as of 11:44, 21 January 2014
Short description: | p1@SLC13A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC13A3_5end |
Coexpression cluster: | C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas |
Association with transcript: | 0bp_to_ENST00000339636, ENST00000372121, ENST00000396360, ENST00000413164, ENST00000435032, NM_001193339, NM_001193342, NM_022829, uc002xsf.1, uc010zxw.1, uc010zxx.1_5end |
EntrezGene: | SLC13A3 |
HGNC: | 14430 |
UniProt: | B4DIR8B4E181B4DF27Q8WWT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.68e-09 | 12 |
retinal pigment epithelial cell | 9.83e-07 | 3 |