FFCP PHASE1:Hg19::chr6:30848740..30848768,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2730 | |||
|TSSclassifier=strong | |||
|UniProt=E7EN94,D6RAJ3 | |||
|association_with_transcript=0bp_to_ENST00000505534,ENST00000513749_5end | |||
|coexpression_cluster_id=C808 | |||
|description=CAGE_peak_8_at_DDR1_5end | |||
|id=chr6:30848740..30848768,+ | |||
|ontology_enrichment_celltype=CL:0000047!8.09e-14!8;CL:0002319!4.92e-12!25;CL:0000540!1.27e-10!6;CL:0000031!1.27e-10!6;CL:0000404!1.27e-10!6;CL:0000133!1.34e-09!59;CL:0002322!7.33e-09!5;CL:0000128!4.33e-08!7;CL:0000126!4.33e-08!7;CL:0000127!4.33e-08!7;CL:0002453!4.33e-08!7;CL:0000221!1.42e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000540;6.58e-17;6!CL:0000404;6.58e-17;6!CL:0002319;5.67e-15;25!CL:0002322;4.35e-14;5!CL:0002605;1.57e-09;3!CL:0000047;4.13e-07;2!CL:0000128;7.59e-07;7!CL:0000126;7.59e-07;7!CL:0000127;7.59e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.59e-22,8;CL:0000540,6.78e-17,6;CL:0000031,6.78e-17,6;CL:0000404,6.78e-17,6;CL:0002319,6.12e-15,25;CL:0002322,6.47e-14,5;CL:0000133,2.44e-10,59;CL:0002605,1.71e-09,3;CL:0000221,9.29e-08,72;CL:0000128,8.01e-07,7;CL:0000126,8.01e-07,7;CL:0000127,8.01e-07,7;CL:0002453,8.01e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;6.58e-17;6!UBERON:0006601;1.90e-15;82!UBERON:0006241;1.36e-09;3!UBERON:0003057;1.36e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.74e-77!82;UBERON:0005743!3.38e-77!86;UBERON:0000073!1.62e-74!94;UBERON:0001016!1.62e-74!94;UBERON:0001049!4.09e-70!57;UBERON:0005068!4.09e-70!57;UBERON:0006241!4.09e-70!57;UBERON:0007135!4.09e-70!57;UBERON:0002616!5.34e-63!59;UBERON:0000955!9.68e-60!69;UBERON:0006238!9.68e-60!69;UBERON:0003075!1.19e-57!86;UBERON:0007284!1.19e-57!86;UBERON:0002346!3.49e-54!90;UBERON:0002780!9.99e-53!41;UBERON:0001890!9.99e-53!41;UBERON:0006240!9.99e-53!41;UBERON:0003080!3.63e-51!42;UBERON:0003056!6.88e-47!61;UBERON:0002020!3.66e-43!34;UBERON:0003528!3.66e-43!34;UBERON:0001893!3.83e-43!34;UBERON:0002791!7.69e-42!33;UBERON:0004121!1.52e-41!169;UBERON:0000153!3.15e-41!129;UBERON:0007811!3.15e-41!129;UBERON:0000033!3.12e-40!123;UBERON:0000924!5.04e-40!173;UBERON:0006601!5.04e-40!173;UBERON:0001869!5.66e-40!32;UBERON:0007023!2.29e-32!115;UBERON:0000956!1.87e-30!25;UBERON:0000203!1.87e-30!25;UBERON:0002619!6.74e-26!22;UBERON:0001950!3.64e-23!20;UBERON:0003076!3.44e-19!15;UBERON:0003057!3.44e-19!15;UBERON:0004732!4.75e-16!13;UBERON:0004733!1.28e-14!12;UBERON:0002028!1.28e-14!12;UBERON:0007277!1.28e-14!12;UBERON:0002308!4.49e-14!9;UBERON:0000125!4.49e-14!9;UBERON:0002420!7.85e-14!9;UBERON:0007245!7.85e-14!9;UBERON:0010009!7.85e-14!9;UBERON:0010011!7.85e-14!9;UBERON:0000454!7.85e-14!9;UBERON:0000025!3.46e-13!194;UBERON:0000064!4.88e-12!219;UBERON:0000483!9.61e-12!309;UBERON:0000475!1.71e-11!365;UBERON:0000119!1.97e-11!312;UBERON:0009663!3.39e-11!7;UBERON:0001894!8.54e-11!7;UBERON:0006222!8.54e-11!7;UBERON:0002298!1.82e-10!8;UBERON:0002680!5.48e-10!9;UBERON:0001895!5.48e-10!9;UBERON:0010092!5.48e-10!9;UBERON:0000477!2.29e-09!286;UBERON:0001871!2.69e-09!7;UBERON:0000200!4.64e-09!6;UBERON:0004111!5.96e-09!241;UBERON:0000922!1.45e-08!612;UBERON:0000481!1.79e-08!347;UBERON:0002021!2.55e-08!5;UBERON:0000349!3.07e-08!5;UBERON:0000369!5.99e-07!4;UBERON:0002435!5.99e-07!4;UBERON:0000204!5.99e-07!4;UBERON:0010082!5.99e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.41e-58;34!UBERON:0002791;1.39e-57;32!UBERON:0003528;2.69e-57;34!UBERON:0002020;2.69e-57;34!UBERON:0001869;2.15e-56;32!UBERON:0002780;2.67e-53;41!UBERON:0001890;2.67e-53;41!UBERON:0000073;1.30e-47;53!UBERON:0002616;1.30e-47;53!UBERON:0000956;3.34e-47;25!UBERON:0000203;3.34e-47;25!UBERON:0002619;1.64e-39;22!UBERON:0001950;6.37e-35;20!UBERON:0001017;6.05e-32;75!UBERON:0000955;5.90e-31;68!UBERON:0001016;1.77e-27;83!UBERON:0000125;1.24e-22;9!UBERON:0002308;1.24e-22;9!UBERON:0002420;3.41e-22;9!UBERON:0007245;3.41e-22;9!UBERON:0010009;3.41e-22;9!UBERON:0010011;3.41e-22;9!UBERON:0000454;3.41e-22;9!UBERON:0009663;7.04e-18;7!UBERON:0002298;7.65e-17;6!UBERON:0002021;4.90e-13;5!UBERON:0004732;7.60e-13;13!UBERON:0000349;1.02e-12;5!UBERON:0001871;1.77e-12;6!UBERON:0004733;8.56e-11;12!UBERON:0002028;8.56e-11;12!UBERON:0000369;1.00e-10;4!UBERON:0002435;1.00e-10;4!UBERON:0000204;1.00e-10;4!UBERON:0007023;1.05e-10;114!UBERON:0011216;3.19e-10;132!UBERON:0000200;3.91e-10;6!UBERON:0001896;7.47e-10;3!UBERON:0005290;7.47e-10;3!UBERON:0002240;1.36e-09;3!UBERON:0005174;1.36e-09;3!UBERON:0001137;1.36e-09;3!UBERON:0000988;1.04e-08;3!UBERON:0005383;1.17e-08;3!UBERON:0005382;1.17e-08;3!UBERON:0001872;1.98e-08;5!UBERON:0010314;5.04e-07;132!UBERON:0005162;6.28e-07;2!UBERON:0000122;6.28e-07;2!UBERON:0001894;9.53e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.82e-98,81;UBERON:0001016,1.30e-93,89;UBERON:0001049,1.81e-89,56;UBERON:0005068,1.81e-89,56;UBERON:0006241,1.81e-89,56;UBERON:0007135,1.81e-89,56;UBERON:0000073,1.62e-81,53;UBERON:0002616,1.62e-81,53;UBERON:0002780,1.04e-72,41;UBERON:0001890,1.04e-72,41;UBERON:0003080,1.04e-72,41;UBERON:0006240,1.04e-72,41;UBERON:0000955,5.17e-70,68;UBERON:0006238,5.17e-70,68;UBERON:0003528,1.11e-68,34;UBERON:0002020,1.11e-68,34;UBERON:0001893,1.19e-68,34;UBERON:0003075,9.16e-67,82;UBERON:0007284,9.16e-67,82;UBERON:0002791,1.16e-63,32;UBERON:0001869,2.74e-63,32;UBERON:0002346,4.30e-63,86;UBERON:0003056,1.73e-55,61;UBERON:0010371,2.69e-52,104;UBERON:0004121,3.99e-48,171;UBERON:0000924,3.99e-48,171;UBERON:0006601,3.99e-48,171;UBERON:0000956,3.57e-47,25;UBERON:0000203,3.57e-47,25;UBERON:0002619,1.64e-39,22;UBERON:0010314,1.39e-38,132;UBERON:0001950,6.41e-35,20;UBERON:0011216,3.58e-33,223;UBERON:0007023,3.05e-30,114;UBERON:0000125,9.54e-23,9;UBERON:0002308,9.54e-23,9;UBERON:0002420,2.46e-22,9;UBERON:0007245,2.46e-22,9;UBERON:0010009,2.46e-22,9;UBERON:0010011,2.46e-22,9;UBERON:0000454,2.46e-22,9;UBERON:0009663,7.25e-18,7;UBERON:0000025,8.01e-18,192;UBERON:0003076,1.69e-17,15;UBERON:0003057,1.69e-17,15;UBERON:0002298,5.00e-17,6;UBERON:0002021,5.31e-13,5;UBERON:0004732,6.32e-13,13;UBERON:0000349,7.26e-13,5;UBERON:0001871,1.09e-12,6;UBERON:0004111,5.37e-12,240;UBERON:0004733,6.82e-11,12;UBERON:0002028,6.82e-11,12;UBERON:0007277,6.82e-11,12;UBERON:0000369,1.09e-10,4;UBERON:0002435,1.09e-10,4;UBERON:0000204,1.09e-10,4;UBERON:0010082,1.09e-10,4;UBERON:0000483,2.75e-10,306;UBERON:0000200,3.02e-10,6;UBERON:0000119,4.51e-10,309;UBERON:0000922,5.48e-10,592;UBERON:0001896,6.67e-10,3;UBERON:0005290,6.67e-10,3;UBERON:0010096,6.67e-10,3;UBERON:0002240,1.33e-09,3;UBERON:0005174,1.33e-09,3;UBERON:0001137,1.33e-09,3;UBERON:0000988,7.60e-09,3;UBERON:0005383,1.23e-08,3;UBERON:0005382,1.23e-08,3;UBERON:0001872,2.61e-08,5;UBERON:0000923,5.54e-07,560;UBERON:0010316,5.54e-07,560;UBERON:0005291,5.54e-07,560;UBERON:0006598,5.54e-07,560;UBERON:0010317,5.54e-07,560;UBERON:0002532,5.54e-07,560;UBERON:0005162,6.85e-07,2;UBERON:0000122,6.85e-07,2;UBERON:0002050,7.97e-07,564;UBERON:0001894,9.90e-07,7;UBERON:0006222,9.90e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0.204000691244253,4.70182082217132,9.15955158819382,3.14811177667634,6.15158934014534,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,3.97046232089085,0.443458794925128,0.43917392846563,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605429710579726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19552671033272,5.16866096453793,3.02104251460748,8.18922334621426,3.02785021050754,6.20461510428911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,18.7807256059624,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.7206538631536,5.20559415430487,10.05275456611,10.3860084507296,7.01732626818479,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0.145016693914229,0,0.801288320820636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,2.81338832821025,0,0,0.63337622438398,0.19924798825107,0,3.52705846995986,0,0,0,0,0,0,0,0,0,4.84666373047609,3.71072392647405,1.99613798001194,0,0,0,0,0,0,0,0,0.173624994933292,6.20018970069687,2.65312164975897,0,0.663475559587348,0.886642856860642,1.75508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.82954842046869,0,6.79366892603483,0,0,0,0,0,2.75465485467441,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,5.42353777873278,0,0,1.2029051231617,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,2.40168115483916,3.42263447229983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,5.17572943223987,2.57205037544031,3.16340704173638,2.49264202817511,0,0,2.12623448303086,0,0.945668487590378,2.25554728980492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.91275234173892,2.90911723833918,0,0,0.213574825135389,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.58634144372552,2.8793914062495,9.17454713104114,6.87760119528484,7.45156835296601,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93561810612423,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0.127894371303652,0,1.10086159299127,0,0,0,0,0,0,0,0,0.352675943690684,0,1.54150140231503,1.41696576325585,2.71377560397157,1.8460472781668,7.05800749420811,2.14387482639075,2.26065903884592,4.28308260777463,0,0,0,0,0,0,0,0.902523940191087,0,0,0,0,0,1.89105236931505,0,1.86018116851066,1.01465296310251,6.01672289920042,0,0,0,0,0.535701835878287,0.672567444437648,3.03482802118316,4.78090601837725,0,0,0,2.51488012014277,1.18390992413128,0,0,0.078493092850514,1.41404030924402,0,0.913158720509496,0,0,0.428859265059938,0.158013611732727,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659643100472575,0,0,0.218559560503957,0.940634592723046,0,0,4.3187862765288,5.64388160621463,10.566393189585,0,0,0.257831551894309,0,0,0,0,0,0,4.87354582714934,0,2.3117106664911,4.36350690340377,1.0580536810308,0,0,0,1.89249637252618,0.218531143927391,0.380095503034311,0,0,0.0918948995348449,0,0.0757786982182394,0,0.829169439458779,5.06821679723287,0,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0,0.202117188958219,0,0.342233301085281,0,0.717222053926764,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@DDR1 | |||
}} |
Revision as of 10:54, 22 January 2014
Short description: | p8@DDR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_DDR1_5end |
Coexpression cluster: | C808_Neural_spinal_cerebral_hippocampus_cerebellum_duodenum_corpus |
Association with transcript: | 0bp_to_ENST00000505534, ENST00000513749_5end |
EntrezGene: | DDR1 |
HGNC: | 2730 |
UniProt: | E7EN94D6RAJ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.59e-22 | 8 |
neuron | 6.78e-17 | 6 |
neuroblast | 6.78e-17 | 6 |
electrically signaling cell | 6.78e-17 | 6 |
neural cell | 6.12e-15 | 25 |
embryonic stem cell | 6.47e-14 | 5 |
neurectodermal cell | 2.44e-10 | 59 |
astrocyte of the cerebral cortex | 1.71e-09 | 3 |
ectodermal cell | 9.29e-08 | 72 |
oligodendrocyte | 8.01e-07 | 7 |
macroglial cell | 8.01e-07 | 7 |
astrocyte | 8.01e-07 | 7 |
oligodendrocyte precursor cell | 8.01e-07 | 7 |