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Coexpression cluster:C66: Difference between revisions

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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,

Latest revision as of 10:22, 17 September 2013


Full id: C66_cerebellum_middle_occipital_parietal_medial_amygdala_hippocampus



Phase1 CAGE Peaks

Hg19::chr10:3164029..3164033,+p@chr10:3164029..3164033
+
Hg19::chr11:122026905..122026926,-p@chr11:122026905..122026926
-
Hg19::chr11:123381898..123381917,-p@chr11:123381898..123381917
-
Hg19::chr11:132339883..132339902,-p@chr11:132339883..132339902
-
Hg19::chr11:132339903..132339919,-p@chr11:132339903..132339919
-
Hg19::chr11:85338835..85338864,-p11@DLG2
Hg19::chr12:100378201..100378213,-p24@ANKS1B
Hg19::chr12:118406702..118406720,-p10@KSR2
Hg19::chr12:118628275..118628287,-p13@TAOK3
Hg19::chr12:118628288..118628306,-p11@TAOK3
Hg19::chr12:2791955..2791993,+p@chr12:2791955..2791993
+
Hg19::chr12:41242644..41242646,+p@chr12:41242644..41242646
+
Hg19::chr12:50273580..50273591,-p@chr12:50273580..50273591
-
Hg19::chr12:50273710..50273721,-p@chr12:50273710..50273721
-
Hg19::chr12:50274471..50274488,-p4@AK127601
Hg19::chr12:50274699..50274759,-p1@AK127601
Hg19::chr12:50274774..50274785,-p3@AK127601
Hg19::chr12:52034036..52034041,+p@chr12:52034036..52034041
+
Hg19::chr12:67198041..67198052,-p4@GRIP1
Hg19::chr13:108159937..108159943,-p@chr13:108159937..108159943
-
Hg19::chr13:113706899..113706941,+p@chr13:113706899..113706941
+
Hg19::chr13:81591855..81591878,-p@chr13:81591855..81591878
-
Hg19::chr14:101312741..101312751,+p@chr14:101312741..101312751
+
Hg19::chr14:101312806..101312820,+p@chr14:101312806..101312820
+
Hg19::chr14:101313382..101313392,+p@chr14:101313382..101313392
+
Hg19::chr14:101313414..101313415,+p@chr14:101313414..101313415
+
Hg19::chr14:101313710..101313727,+p2@MEG3
Hg19::chr14:101313879..101313891,+p12@MEG3
Hg19::chr14:101313902..101313914,+p3@MEG3
Hg19::chr14:101314042..101314058,+p4@MEG3
Hg19::chr14:101314095..101314102,+p15@MEG3
Hg19::chr14:101314162..101314175,+p6@MEG3
Hg19::chr14:101314181..101314186,+p26@MEG3
Hg19::chr14:101314342..101314360,+p8@MEG3
Hg19::chr14:101314376..101314382,+p38@MEG3
Hg19::chr14:101314648..101314668,+p@chr14:101314648..101314668
+
Hg19::chr14:101314702..101314709,+p@chr14:101314702..101314709
+
Hg19::chr14:101314844..101314851,+p@chr14:101314844..101314851
+
Hg19::chr14:101314865..101314876,+p@chr14:101314865..101314876
+
Hg19::chr14:101314996..101315014,+p@chr14:101314996..101315014
+
Hg19::chr14:101315609..101315620,+p1@ENST00000516892
Hg19::chr14:101315902..101315908,+p@chr14:101315902..101315908
+
Hg19::chr14:101316196..101316209,+p@chr14:101316196..101316209
+
Hg19::chr14:101316298..101316314,+p@chr14:101316298..101316314
+
Hg19::chr14:101316418..101316440,+p@chr14:101316418..101316440
+
Hg19::chr14:23982397..23982437,+p1@ENST00000557568
Hg19::chr14:24020938..24020988,-p1@ZFHX2
Hg19::chr15:25341499..25341510,+p@chr15:25341499..25341510
+
Hg19::chr15:75640154..75640228,+p2@NEIL1
Hg19::chr15:79285762..79285784,-p@chr15:79285762..79285784
-
Hg19::chr15:91806262..91806273,+p@chr15:91806262..91806273
+
Hg19::chr16:2138789..2138809,-p@chr16:2138789..2138809
-
Hg19::chr16:24621660..24621673,+p@chr16:24621660..24621673
+
Hg19::chr16:4323246..4323299,-p5@TFAP4
Hg19::chr16:6107848..6107852,+p@chr16:6107848..6107852
+
Hg19::chr16:80838195..80838228,-p4@CDYL2
Hg19::chr17:38243142..38243171,+p@chr17:38243142..38243171
+
Hg19::chr17:38243177..38243228,+p@chr17:38243177..38243228
+
Hg19::chr17:44046645..44046656,+p@chr17:44046645..44046656
+
Hg19::chr17:44047089..44047100,+p@chr17:44047089..44047100
+
Hg19::chr17:44047222..44047257,+p@chr17:44047222..44047257
+
Hg19::chr17:77465218..77465229,-p@chr17:77465218..77465229
-
Hg19::chr17:79367836..79367872,-p@chr17:79367836..79367872
-
Hg19::chr17:79367873..79367903,-p@chr17:79367873..79367903
-
Hg19::chr18:35145730..35145817,-p1@CELF4
Hg19::chr18:44246403..44246407,-p@chr18:44246403..44246407
-
Hg19::chr19:18701047..18701052,+p5@C19orf60
Hg19::chr19:19644945..19644969,+p3@YJEFN3
Hg19::chr19:23506500..23506542,-p@chr19:23506500..23506542
-
Hg19::chr19:23507223..23507235,-p@chr19:23507223..23507235
-
Hg19::chr19:39522957..39522968,+p@chr19:39522957..39522968
+
Hg19::chr19:46503170..46503229,+p@chr19:46503170..46503229
+
Hg19::chr19:5231762..5231778,-p@chr19:5231762..5231778
-
Hg19::chr1:10147785..10147790,+p@chr1:10147785..10147790
+
Hg19::chr1:172152936..172152941,+p@chr1:172152936..172152941
+
Hg19::chr1:173360572..173360575,-p@chr1:173360572..173360575
-
Hg19::chr1:241463231..241463236,-p@chr1:241463231..241463236
-
Hg19::chr1:241490501..241490517,-p@chr1:241490501..241490517
-
Hg19::chr1:28879369..28879404,-p@chr1:28879369..28879404
-
Hg19::chr1:3541308..3541355,-p1@ENST00000435049
Hg19::chr1:7163290..7163303,+p@chr1:7163290..7163303
+
Hg19::chr20:10200131..10200159,-p1@LOC100131208
Hg19::chr20:10200166..10200187,-p2@LOC100131208
Hg19::chr20:58249368..58249405,+p@chr20:58249368..58249405
+
Hg19::chr21:33959469..33959492,-p@chr21:33959469..33959492
-
Hg19::chr21:35778348..35778374,+p@chr21:35778348..35778374
+
Hg19::chr21:38987268..38987300,-p@chr21:38987268..38987300
-
Hg19::chr21:39134217..39134228,-p@chr21:39134217..39134228
-
Hg19::chr22:22641542..22641574,-p@chr22:22641542..22641574
-
Hg19::chr22:26723168..26723180,+p@chr22:26723168..26723180
+
Hg19::chr22:48977902..48977924,+p@chr22:48977902..48977924
+
Hg19::chr22:48977941..48977963,+p@chr22:48977941..48977963
+
Hg19::chr22:48977977..48978005,+p@chr22:48977977..48978005
+
Hg19::chr22:48978045..48978073,+p@chr22:48978045..48978073
+
Hg19::chr22:48978075..48978110,+p@chr22:48978075..48978110
+
Hg19::chr22:48979505..48979521,+p@chr22:48979505..48979521
+
Hg19::chr22:48979566..48979608,+p@chr22:48979566..48979608
+
Hg19::chr22:48979677..48979692,+p@chr22:48979677..48979692
+
Hg19::chr22:48979768..48979786,+p@chr22:48979768..48979786
+
Hg19::chr22:48979929..48979947,+p@chr22:48979929..48979947
+
Hg19::chr22:48979951..48979970,+p@chr22:48979951..48979970
+
Hg19::chr22:48980210..48980266,+p@chr22:48980210..48980266
+
Hg19::chr22:48980370..48980396,+p@chr22:48980370..48980396
+
Hg19::chr22:48980473..48980481,+p@chr22:48980473..48980481
+
Hg19::chr22:48980509..48980527,+p@chr22:48980509..48980527
+
Hg19::chr22:48980530..48980548,+p@chr22:48980530..48980548
+
Hg19::chr22:48980582..48980607,+p@chr22:48980582..48980607
+
Hg19::chr22:48980608..48980618,+p@chr22:48980608..48980618
+
Hg19::chr22:48980619..48980650,+p@chr22:48980619..48980650
+
Hg19::chr22:48980655..48980678,+p@chr22:48980655..48980678
+
Hg19::chr22:48980816..48980832,+p@chr22:48980816..48980832
+
Hg19::chr22:48980939..48980957,+p@chr22:48980939..48980957
+
Hg19::chr22:48980959..48981016,+p@chr22:48980959..48981016
+
Hg19::chr22:48981029..48981042,+p@chr22:48981029..48981042
+
Hg19::chr22:48981063..48981087,+p@chr22:48981063..48981087
+
Hg19::chr22:48981340..48981370,+p@chr22:48981340..48981370
+
Hg19::chr22:48981458..48981471,+p@chr22:48981458..48981471
+
Hg19::chr2:142888429..142888438,-p6@LRP1B
Hg19::chr2:149790593..149790658,+p@chr2:149790593..149790658
+
Hg19::chr2:149790678..149790689,+p@chr2:149790678..149790689
+
Hg19::chr2:149790696..149790732,+p@chr2:149790696..149790732
+
Hg19::chr2:149790831..149790848,+p@chr2:149790831..149790848
+
Hg19::chr2:149790918..149790964,+p@chr2:149790918..149790964
+
Hg19::chr2:149791025..149791051,+p@chr2:149791025..149791051
+
Hg19::chr2:149880971..149881018,+p@chr2:149880971..149881018
+
Hg19::chr2:162482221..162482270,-p@chr2:162482221..162482270
-
Hg19::chr2:187629214..187629219,+p@chr2:187629214..187629219
+
Hg19::chr2:218108202..218108224,+p@chr2:218108202..218108224
+
Hg19::chr2:2328299..2328363,-p3@MYT1L
Hg19::chr2:241392210..241392222,+p10@GPC1
Hg19::chr2:241392227..241392242,+p@chr2:241392227..241392242
+
Hg19::chr2:80183994..80183997,+p@chr2:80183994..80183997
+
Hg19::chr3:10407580..10407596,-p@chr3:10407580..10407596
-
Hg19::chr3:10407605..10407617,-p@chr3:10407605..10407617
-
Hg19::chr3:10407658..10407665,-p@chr3:10407658..10407665
-
Hg19::chr3:120888586..120888603,+p@chr3:120888586..120888603
+
Hg19::chr3:120899828..120899832,+p@chr3:120899828..120899832
+
Hg19::chr3:35789110..35789121,+p@chr3:35789110..35789121
+
Hg19::chr3:35789184..35789195,+p@chr3:35789184..35789195
+
Hg19::chr3:35789351..35789366,+p@chr3:35789351..35789366
+
Hg19::chr3:85370317..85370318,+p@chr3:85370317..85370318
+
Hg19::chr3:85414363..85414367,+p@chr3:85414363..85414367
+
Hg19::chr4:2060313..2060337,-p@chr4:2060313..2060337
-
Hg19::chr4:2301429..2301444,-p@chr4:2301429..2301444
-
Hg19::chr4:24349594..24349636,-p@chr4:24349594..24349636
-
Hg19::chr4:24474485..24474537,-p@chr4:24474485..24474537
-
Hg19::chr4:6470800..6470805,-p@chr4:6470800..6470805
-
Hg19::chr5:159479553..159479554,-p@chr5:159479553..159479554
-
Hg19::chr5:17807394..17807408,+p1@LOC646241
Hg19::chr6:101930315..101930345,+p@chr6:101930315..101930345
+
Hg19::chr6:123318500..123318535,+p@chr6:123318500..123318535
+
Hg19::chr6:123387461..123387475,+p@chr6:123387461..123387475
+
Hg19::chr6:136847074..136847092,-p11@MAP7
Hg19::chr6:69353352..69353355,+p@chr6:69353352..69353355
+
Hg19::chr6:84363120..84363166,-p@chr6:84363120..84363166
-
Hg19::chr7:10763409..10763413,-p@chr7:10763409..10763413
-
Hg19::chr7:130150437..130150449,+p@chr7:130150437..130150449
+
Hg19::chr7:141036329..141036354,+p@chr7:141036329..141036354
+
Hg19::chr7:141036376..141036394,+p@chr7:141036376..141036394
+
Hg19::chr7:141036457..141036556,+p@chr7:141036457..141036556
+
Hg19::chr7:157747321..157747358,-p@chr7:157747321..157747358
-
Hg19::chr7:43237574..43237613,+p@chr7:43237574..43237613
+
Hg19::chr7:78632377..78632407,-p@chr7:78632377..78632407
-
Hg19::chr7:82545719..82545750,-p5@PCLO
Hg19::chr7:82582874..82582904,-p@chr7:82582874..82582904
-
Hg19::chr7:82583410..82583424,-p@chr7:82583410..82583424
-
Hg19::chr7:82595550..82595561,-p@chr7:82595550..82595561
-
Hg19::chr7:82595698..82595715,-p@chr7:82595698..82595715
-
Hg19::chr7:82595722..82595746,-p@chr7:82595722..82595746
-
Hg19::chr7:82595772..82595786,-p@chr7:82595772..82595786
-
Hg19::chr8:10891093..10891117,-p@chr8:10891093..10891117
-
Hg19::chr8:85135273..85135281,+p@chr8:85135273..85135281
+
Hg19::chr8:9757705..9757714,-p@chr8:9757705..9757714
-
Hg19::chr8:9765784..9765807,-p@chr8:9765784..9765807
-
Hg19::chr9:101200582..101200586,-p@chr9:101200582..101200586
-
Hg19::chr9:101254627..101254632,-p@chr9:101254627..101254632
-
Hg19::chr9:124569721..124569737,-p@chr9:124569721..124569737
-
Hg19::chr9:124658439..124658469,-p@chr9:124658439..124658469
-
Hg19::chr9:68418347..68418357,+p@chr9:68418347..68418357
+
Hg19::chr9:68418534..68418556,+p@chr9:68418534..68418556
+
Hg19::chr9:68418560..68418591,+p@chr9:68418560..68418591
+
Hg19::chr9:68418627..68418643,+p@chr9:68418627..68418643
+
Hg19::chr9:68418644..68418655,+p@chr9:68418644..68418655
+
Hg19::chr9:68418727..68418769,+p@chr9:68418727..68418769
+
Hg19::chr9:68418845..68418872,+p@chr9:68418845..68418872
+
Hg19::chr9:68418878..68418901,+p@chr9:68418878..68418901
+
Hg19::chr9:68419103..68419127,+p@chr9:68419103..68419127
+
Hg19::chr9:68419129..68419151,+p@chr9:68419129..68419151
+
Hg19::chr9:68419215..68419301,+p@chr9:68419215..68419301
+
Hg19::chr9:68419314..68419335,+p@chr9:68419314..68419335
+
Hg19::chr9:99540425..99540444,+p@chr9:99540425..99540444
+
Hg19::chrX:101381785..101381798,+p1@AB464729
Hg19::chrX:101967412..101967415,+p5@ARMCX5-GPRASP2
p7@GPRASP2
Hg19::chrX:139794589..139794595,+p@chrX:139794589..139794595
+
Hg19::chrX:139795559..139795571,+p@chrX:139795559..139795571
+
Hg19::chrX:139795686..139795699,+p@chrX:139795686..139795699
+
Hg19::chrX:139795702..139795707,+p@chrX:139795702..139795707
+
Hg19::chrX:139795718..139795719,+p@chrX:139795718..139795719
+
Hg19::chrX:139795738..139795748,+p@chrX:139795738..139795748
+
Hg19::chrX:139795927..139795938,+p@chrX:139795927..139795938
+
Hg19::chrX:139795962..139795974,+p@chrX:139795962..139795974
+
Hg19::chrX:139795983..139795993,+p@chrX:139795983..139795993
+
Hg19::chrX:139796004..139796015,+p@chrX:139796004..139796015
+
Hg19::chrX:139796146..139796155,+p@chrX:139796146..139796155
+
Hg19::chrX:139797894..139797918,+p@chrX:139797894..139797918
+
Hg19::chrX:139798387..139798398,+p@chrX:139798387..139798398
+
Hg19::chrX:139798407..139798424,+p@chrX:139798407..139798424
+
Hg19::chrX:139798558..139798571,+p@chrX:139798558..139798571
+
Hg19::chrX:139798755..139798768,+p@chrX:139798755..139798768
+
Hg19::chrX:139799498..139799521,+p@chrX:139799498..139799521
+
Hg19::chrX:139799550..139799565,+p@chrX:139799550..139799565
+
Hg19::chrX:139800864..139800913,+p@chrX:139800864..139800913
+
Hg19::chrX:139802859..139802874,+p@chrX:139802859..139802874
+
Hg19::chrX:139803017..139803037,+p@chrX:139803017..139803037
+
Hg19::chrX:139803820..139803865,+p@chrX:139803820..139803865
+
Hg19::chrX:139804034..139804058,+p@chrX:139804034..139804058
+
Hg19::chrX:139804286..139804294,+p@chrX:139804286..139804294
+
Hg19::chrX:139804312..139804329,+p@chrX:139804312..139804329
+
Hg19::chrX:139805122..139805154,+p@chrX:139805122..139805154
+
Hg19::chrX:139805225..139805235,+p@chrX:139805225..139805235
+
Hg19::chrX:139805237..139805249,+p@chrX:139805237..139805249
+
Hg19::chrX:139805250..139805272,+p@chrX:139805250..139805272
+
Hg19::chrX:139805285..139805304,+p@chrX:139805285..139805304
+
Hg19::chrX:139805315..139805405,+p@chrX:139805315..139805405
+
Hg19::chrX:139805418..139805432,+p@chrX:139805418..139805432
+
Hg19::chrX:139805447..139805459,+p@chrX:139805447..139805459
+
Hg19::chrX:139805460..139805472,+p@chrX:139805460..139805472
+
Hg19::chrX:139805481..139805518,+p@chrX:139805481..139805518
+
Hg19::chrX:139805588..139805598,+p@chrX:139805588..139805598
+
Hg19::chrX:139805623..139805632,+p@chrX:139805623..139805632
+
Hg19::chrX:139805680..139805692,+p@chrX:139805680..139805692
+
Hg19::chrX:139805765..139805779,+p@chrX:139805765..139805779
+
Hg19::chrX:139805877..139805899,+p@chrX:139805877..139805899
+
Hg19::chrX:139805918..139805934,+p@chrX:139805918..139805934
+
Hg19::chrX:139805966..139805989,+p@chrX:139805966..139805989
+
Hg19::chrX:139806014..139806081,+p@chrX:139806014..139806081
+
Hg19::chrX:139806101..139806140,+p@chrX:139806101..139806140
+
Hg19::chrX:139806144..139806160,+p@chrX:139806144..139806160
+
Hg19::chrX:139806183..139806199,+p@chrX:139806183..139806199
+
Hg19::chrX:139806203..139806220,+p@chrX:139806203..139806220
+
Hg19::chrX:139806224..139806238,+p@chrX:139806224..139806238
+
Hg19::chrX:139806244..139806275,+p@chrX:139806244..139806275
+
Hg19::chrX:139806318..139806328,+p@chrX:139806318..139806328
+
Hg19::chrX:139806342..139806361,+p@chrX:139806342..139806361
+
Hg19::chrX:139806362..139806372,+p@chrX:139806362..139806372
+
Hg19::chrX:139806472..139806481,+p@chrX:139806472..139806481
+
Hg19::chrX:139806611..139806614,+p@chrX:139806611..139806614
+
Hg19::chrX:139806622..139806636,+p@chrX:139806622..139806636
+
Hg19::chrX:139806732..139806735,+p@chrX:139806732..139806735
+
Hg19::chrX:139806818..139806829,+p@chrX:139806818..139806829
+
Hg19::chrX:139806880..139806889,+p@chrX:139806880..139806889
+
Hg19::chrX:139806923..139806934,+p@chrX:139806923..139806934
+
Hg19::chrX:139806967..139806978,+p@chrX:139806967..139806978
+
Hg19::chrX:139807109..139807115,+p@chrX:139807109..139807115
+
Hg19::chrX:139807128..139807139,+p@chrX:139807128..139807139
+
Hg19::chrX:139807231..139807236,+p@chrX:139807231..139807236
+
Hg19::chrX:139807886..139807891,+p@chrX:139807886..139807891
+
Hg19::chrX:139807915..139807925,+p@chrX:139807915..139807925
+
Hg19::chrX:139807996..139808005,+p@chrX:139807996..139808005
+
Hg19::chrX:139808209..139808220,+p@chrX:139808209..139808220
+
Hg19::chrX:139808316..139808327,+p@chrX:139808316..139808327
+
Hg19::chrX:139808427..139808452,+p@chrX:139808427..139808452
+
Hg19::chrX:139808503..139808541,+p@chrX:139808503..139808541
+
Hg19::chrX:139808820..139808832,+p@chrX:139808820..139808832
+
Hg19::chrX:139810734..139810747,+p@chrX:139810734..139810747
+
Hg19::chrX:139810762..139810784,+p@chrX:139810762..139810784
+
Hg19::chrX:139810962..139811021,+p@chrX:139810962..139811021
+
Hg19::chrX:139811024..139811091,+p@chrX:139811024..139811091
+
Hg19::chrX:139811122..139811150,+p@chrX:139811122..139811150
+
Hg19::chrX:1479347..1479364,-p@chrX:1479347..1479364
-
Hg19::chrX:1480171..1480189,-p@chrX:1480171..1480189
-
Hg19::chrX:1481299..1481310,-p@chrX:1481299..1481310
-
Hg19::chrX:1481372..1481387,-p@chrX:1481372..1481387
-
Hg19::chrX:1481546..1481563,-p@chrX:1481546..1481563
-
Hg19::chrX:1481635..1481645,-p@chrX:1481635..1481645
-
Hg19::chrX:21666936..21666940,+p@chrX:21666936..21666940
+
Hg19::chrX:73069837..73069854,-p@chrX:73069837..73069854
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
neural tube3.47e-13256
neural rod3.47e-13256
future spinal cord3.47e-13256
neural keel3.47e-13256
regional part of nervous system6.02e-12353
regional part of brain6.02e-12353
regional part of forebrain1.15e-10141
forebrain1.15e-10141
anterior neural tube1.15e-10141
future forebrain1.15e-10141
neurectoderm2.12e-9786
brain1.50e-9668
future brain1.50e-9668
nervous system4.87e-9589
central nervous system9.73e-9581
neural plate1.15e-9482
presumptive neural plate1.15e-9482
brain grey matter2.28e-8634
gray matter2.28e-8634
telencephalon7.56e-8634
regional part of telencephalon4.76e-8032
cerebral hemisphere5.36e-8032
ecto-epithelium2.27e-72104
pre-chordal neural plate2.20e-6961
regional part of cerebral cortex4.35e-6722
neocortex2.22e-6020
adult organism1.22e-59114
cerebral cortex1.22e-5825
pallium1.22e-5825
structure with developmental contribution from neural crest2.73e-57132
ectoderm-derived structure1.23e-52171
ectoderm1.23e-52171
presumptive ectoderm1.23e-52171
organ system subdivision1.46e-34223
tube1.99e-32192
posterior neural tube9.59e-3015
chordal neural plate9.59e-3015
basal ganglion2.92e-299
nuclear complex of neuraxis2.92e-299
aggregate regional part of brain2.92e-299
collection of basal ganglia2.92e-299
cerebral subcortex2.92e-299
neural nucleus6.91e-299
nucleus of brain6.91e-299
anatomical conduit1.23e-23240
telencephalic nucleus9.45e-237
segmental subdivision of hindbrain1.69e-2112
hindbrain1.69e-2112
presumptive hindbrain1.69e-2112
gyrus2.50e-206
segmental subdivision of nervous system1.05e-1913
brainstem2.52e-196
anatomical cluster1.05e-17373
limbic system1.18e-175
temporal lobe2.07e-176
parietal lobe4.24e-175
occipital lobe5.54e-175
epithelium5.66e-17306
cell layer1.07e-16309
diencephalon1.44e-167
future diencephalon1.44e-167
organ part6.14e-16218
corpus striatum6.76e-144
striatum6.76e-144
ventral part of telencephalon6.76e-144
future corpus striatum6.76e-144
regional part of metencephalon1.44e-139
metencephalon1.44e-139
future metencephalon1.44e-139
multi-tissue structure4.21e-13342
frontal cortex3.49e-113
caudate-putamen4.57e-113
dorsal striatum4.57e-113
pons8.94e-113
spinal cord2.56e-103
dorsal region element2.56e-103
dorsum2.56e-103
medulla oblongata2.82e-103
myelencephalon2.82e-103
future myelencephalon2.82e-103
germ layer1.63e-09560
germ layer / neural crest1.63e-09560
embryonic tissue1.63e-09560
presumptive structure1.63e-09560
germ layer / neural crest derived structure1.63e-09560
epiblast (generic)1.63e-09560
embryonic structure2.35e-09564
developing anatomical structure1.06e-08581
Ammon's horn2.65e-082
lobe parts of cerebral cortex2.65e-082
hippocampal formation2.65e-082
limbic lobe2.65e-082
embryo2.67e-08592
amygdala3.15e-082
middle frontal gyrus3.15e-082
middle temporal gyrus3.26e-082
gland of diencephalon4.29e-084
neuroendocrine gland4.29e-084
regional part of diencephalon4.96e-084
organ6.41e-08503

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.0172468
MA0006.15.26752
MA0007.10.102797
MA0009.10.539988
MA0014.10
MA0017.10.0010092
MA0019.10.386248
MA0024.10.0328206
MA0025.11.34362
MA0027.11.014
MA0028.16.89423e-07
MA0029.10.719502
MA0030.10.0356682
MA0031.10.0462323
MA0038.11.41903
MA0040.10.200512
MA0041.10.587699
MA0042.17.25203
MA0043.10.188117
MA0046.10.0257985
MA0048.14.75393e-07
MA0050.10.113974
MA0051.10.453919
MA0052.10.348079
MA0055.11.17166e-12
MA0056.10
MA0057.12.41288e-06
MA0058.10.000135589
MA0059.10.00527201
MA0060.14.08964e-08
MA0061.10.000368824
MA0063.10
MA0066.10.0145088
MA0067.10.0588493
MA0068.16.72367
MA0069.10.169664
MA0070.12.43842
MA0071.10.153892
MA0072.10.0669252
MA0073.1143.861
MA0074.10.0287556
MA0076.13.87273e-06
MA0077.10.653863
MA0078.10.191834
MA0081.10.00246397
MA0083.10.00554324
MA0084.10.13388
MA0087.10.451496
MA0088.12.8849e-07
MA0089.10
MA0090.17.60063
MA0091.10.0182771
MA0092.10.410575
MA0093.10.000205244
MA0095.10
MA0098.10
MA0100.10.000102583
MA0101.10.00138538
MA0103.10.0182272
MA0105.11.45175e-05
MA0106.10.105285
MA0107.10.0359645
MA0108.20.000525741
MA0109.10
MA0111.10.000233829
MA0113.10.305845
MA0114.15.10263e-05
MA0115.10.0380306
MA0116.10.000475679
MA0117.10.00758643
MA0119.10.223455
MA0122.10.0490477
MA0124.12.14446
MA0125.10.606776
MA0130.10
MA0131.10.015051
MA0132.10
MA0133.10
MA0135.10.107813
MA0136.10.00651348
MA0139.12.81578e-08
MA0140.10.148525
MA0141.10.00230612
MA0142.11.4744
MA0143.10.0735935
MA0144.10.0171926
MA0145.13.82008e-09
MA0146.10
MA0147.10.000109499
MA0148.11.34223
MA0149.10.499455
MA0062.27.84162e-12
MA0035.20.218001
MA0039.20
MA0138.20.297732
MA0002.22.37118
MA0137.26.37748e-05
MA0104.21.41294e-07
MA0047.20.978065
MA0112.23.23066e-05
MA0065.21.6381e-08
MA0150.10.00562047
MA0151.10
MA0152.10.333177
MA0153.10.013396
MA0154.15.14422e-06
MA0155.19.55402e-09
MA0156.15.39919e-06
MA0157.10.427584
MA0158.10
MA0159.10.00123717
MA0160.10.00127744
MA0161.10
MA0162.11.57234e-13
MA0163.12.67985e-11
MA0164.10.00743523
MA0080.22.33128e-05
MA0018.20.01274
MA0099.20.00260616
MA0079.20
MA0102.20.152697
MA0258.16.19049e-05
MA0259.10.00346935
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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