FFCP PHASE1:Hg19::chrX:32173579..32173593,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=1756 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2928 | |||
|TSSclassifier=strong | |||
|UniProt=E7EQR9,F8VX32,E7EQS5,E7ESB2,F5GZY3,A1L0U9,P11532,Q8N754,A7E212,Q59HC3 | |||
|association_with_transcript=0bp_to_ENST00000343523,ENST00000359836,ENST00000378707,ENST00000474231,ENST00000541735,NM_004013,NM_004020,NM_004021,NM_004022,NM_004023,uc004dcr.1,uc004dcs.1,uc004dct.1,uc004dcu.1,uc004dcv.1_5end | |||
|coexpression_cluster_id=C335 | |||
|description=CAGE_peak_5_at_DMD_5end | |||
|id=chrX:32173579..32173593,- | |||
|ontology_enrichment_celltype=CL:0000047!7.59e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000047;7.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.55e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.15e-20;82!UBERON:0006215;1.01e-09;3!UBERON:0006241;2.25e-08;3!UBERON:0003057;2.25e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.21e-79!57;UBERON:0005068!1.21e-79!57;UBERON:0006241!1.21e-79!57;UBERON:0007135!1.21e-79!57;UBERON:0001017!2.28e-76!82;UBERON:0000073!2.99e-74!94;UBERON:0001016!2.99e-74!94;UBERON:0005743!3.12e-74!86;UBERON:0002780!3.68e-67!41;UBERON:0001890!3.68e-67!41;UBERON:0006240!3.68e-67!41;UBERON:0002616!4.37e-67!59;UBERON:0003080!3.00e-65!42;UBERON:0007023!7.21e-63!115;UBERON:0000955!8.67e-62!69;UBERON:0006238!8.67e-62!69;UBERON:0003075!9.30e-59!86;UBERON:0007284!9.30e-59!86;UBERON:0001893!1.30e-56!34;UBERON:0002020!1.75e-56!34;UBERON:0003528!1.75e-56!34;UBERON:0002346!2.66e-55!90;UBERON:0002791!6.61e-55!33;UBERON:0001869!8.83e-54!32;UBERON:0003056!1.03e-44!61;UBERON:0000956!1.89e-42!25;UBERON:0000203!1.89e-42!25;UBERON:0004121!6.81e-42!169;UBERON:0000924!2.09e-40!173;UBERON:0006601!2.09e-40!173;UBERON:0002619!1.02e-38!22;UBERON:0001950!8.39e-36!20;UBERON:0000033!8.40e-34!123;UBERON:0000153!9.44e-33!129;UBERON:0007811!9.44e-33!129;UBERON:0000025!1.03e-21!194;UBERON:0004111!6.96e-18!241;UBERON:0002420!1.77e-15!9;UBERON:0007245!1.77e-15!9;UBERON:0010009!1.77e-15!9;UBERON:0010011!1.77e-15!9;UBERON:0000454!1.77e-15!9;UBERON:0003076!2.79e-15!15;UBERON:0003057!2.79e-15!15;UBERON:0002308!3.62e-15!9;UBERON:0000125!3.62e-15!9;UBERON:0001871!1.71e-14!7;UBERON:0000477!6.76e-14!286;UBERON:0000064!6.00e-13!219;UBERON:0004732!2.18e-12!13;UBERON:0009663!2.84e-12!7;UBERON:0000483!4.99e-12!309;UBERON:0000119!1.00e-11!312;UBERON:0001894!1.24e-11!7;UBERON:0006222!1.24e-11!7;UBERON:0000200!1.62e-11!6;UBERON:0000922!2.27e-11!612;UBERON:0004733!4.46e-11!12;UBERON:0002028!4.46e-11!12;UBERON:0007277!4.46e-11!12;UBERON:0002298!6.20e-10!8;UBERON:0001872!6.55e-10!5;UBERON:0002021!1.21e-09!5;UBERON:0000062!1.48e-09!511;UBERON:0000349!2.52e-09!5;UBERON:0000481!2.79e-09!347;UBERON:0000468!6.02e-09!659;UBERON:0002050!1.15e-08!605;UBERON:0005423!1.15e-08!605;UBERON:0000475!2.39e-08!365;UBERON:0000923!3.10e-08!604;UBERON:0005291!3.10e-08!604;UBERON:0006598!3.10e-08!604;UBERON:0002532!3.10e-08!604;UBERON:0000369!6.05e-08!4;UBERON:0002435!6.05e-08!4;UBERON:0000204!6.05e-08!4;UBERON:0010082!6.05e-08!4;UBERON:0000467!6.29e-08!625;UBERON:0000480!7.17e-08!626;UBERON:0003296!2.62e-07!4;UBERON:0010133!2.62e-07!4;UBERON:0002680!2.93e-07!9;UBERON:0001895!2.93e-07!9;UBERON:0010092!2.93e-07!9;UBERON:0002771!8.80e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.35e-69;41!UBERON:0001890;5.35e-69;41!UBERON:0001893;1.68e-68;34!UBERON:0001869;1.91e-68;32!UBERON:0003528;2.07e-68;34!UBERON:0002020;2.07e-68;34!UBERON:0002791;4.84e-68;32!UBERON:0000073;1.02e-62;53!UBERON:0002616;1.02e-62;53!UBERON:0000956;8.20e-59;25!UBERON:0000203;8.20e-59;25!UBERON:0002619;1.93e-57;22!UBERON:0001950;4.30e-53;20!UBERON:0000955;9.52e-43;68!UBERON:0001017;3.26e-41;75!UBERON:0001016;1.88e-37;83!UBERON:0002420;1.70e-22;9!UBERON:0007245;1.70e-22;9!UBERON:0010009;1.70e-22;9!UBERON:0010011;1.70e-22;9!UBERON:0000454;1.70e-22;9!UBERON:0000125;4.45e-22;9!UBERON:0002308;4.45e-22;9!UBERON:0004732;2.21e-18;13!UBERON:0001871;2.61e-18;6!UBERON:0009663;1.03e-17;7!UBERON:0007023;5.85e-17;114!UBERON:0001894;1.10e-16;7!UBERON:0000200;1.57e-16;6!UBERON:0004733;2.26e-16;12!UBERON:0002028;2.26e-16;12!UBERON:0011216;5.24e-15;132!UBERON:0002298;1.65e-14;6!UBERON:0001872;3.85e-14;5!UBERON:0002021;1.00e-13;5!UBERON:0000349;3.97e-13;5!UBERON:0000369;3.59e-11;4!UBERON:0002435;3.59e-11;4!UBERON:0000204;3.59e-11;4!UBERON:0002680;1.23e-10;9!UBERON:0001895;1.23e-10;9!UBERON:0003296;3.23e-10;4!UBERON:0010133;3.23e-10;4!UBERON:0002784;7.66e-10;4!UBERON:0001870;2.88e-09;3!UBERON:0005383;9.09e-09;3!UBERON:0005382;9.09e-09;3!UBERON:0010314;1.38e-08;132!UBERON:0000988;2.22e-08;3!UBERON:0002240;2.25e-08;3!UBERON:0005174;2.25e-08;3!UBERON:0001137;2.25e-08;3!UBERON:0001896;8.20e-08;3!UBERON:0005290;8.20e-08;3!UBERON:0002771;8.92e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.29e-118,56;UBERON:0005068,1.29e-118,56;UBERON:0006241,1.29e-118,56;UBERON:0007135,1.29e-118,56;UBERON:0000073,2.59e-111,53;UBERON:0002616,2.59e-111,53;UBERON:0001017,8.79e-110,81;UBERON:0001016,2.72e-104,89;UBERON:0002780,3.48e-96,41;UBERON:0001890,3.48e-96,41;UBERON:0003080,3.48e-96,41;UBERON:0006240,3.48e-96,41;UBERON:0000955,3.83e-94,68;UBERON:0006238,3.83e-94,68;UBERON:0001893,2.93e-80,34;UBERON:0003075,4.12e-80,82;UBERON:0007284,4.12e-80,82;UBERON:0003528,4.53e-80,34;UBERON:0002020,4.53e-80,34;UBERON:0001869,5.58e-76,32;UBERON:0002346,9.24e-76,86;UBERON:0002791,1.73e-75,32;UBERON:0003056,1.55e-64,61;UBERON:0010371,2.74e-60,104;UBERON:0000956,6.47e-59,25;UBERON:0000203,6.47e-59,25;UBERON:0002619,1.65e-57,22;UBERON:0007023,2.52e-53,114;UBERON:0001950,4.14e-53,20;UBERON:0004121,1.26e-47,171;UBERON:0000924,1.26e-47,171;UBERON:0006601,1.26e-47,171;UBERON:0010314,1.11e-46,132;UBERON:0011216,9.63e-45,223;UBERON:0000025,9.07e-29,192;UBERON:0003076,8.66e-23,15;UBERON:0003057,8.66e-23,15;UBERON:0002420,1.84e-22,9;UBERON:0007245,1.84e-22,9;UBERON:0010009,1.84e-22,9;UBERON:0010011,1.84e-22,9;UBERON:0000454,1.84e-22,9;UBERON:0000125,5.39e-22,9;UBERON:0002308,5.39e-22,9;UBERON:0004111,3.51e-20,240;UBERON:0004732,2.07e-18,13;UBERON:0001871,2.20e-18,6;UBERON:0009663,1.21e-17,7;UBERON:0001894,1.11e-16,7;UBERON:0006222,1.11e-16,7;UBERON:0000200,1.66e-16,6;UBERON:0004733,1.99e-16,12;UBERON:0002028,1.99e-16,12;UBERON:0007277,1.99e-16,12;UBERON:0002298,1.38e-14,6;UBERON:0000483,2.33e-14,306;UBERON:0001872,4.29e-14,5;UBERON:0000119,4.41e-14,309;UBERON:0002021,1.08e-13,5;UBERON:0000349,3.24e-13,5;UBERON:0000369,3.79e-11,4;UBERON:0002435,3.79e-11,4;UBERON:0000204,3.79e-11,4;UBERON:0010082,3.79e-11,4;UBERON:0002050,1.20e-10,564;UBERON:0002680,1.20e-10,9;UBERON:0001895,1.20e-10,9;UBERON:0010092,1.20e-10,9;UBERON:0000922,1.34e-10,592;UBERON:0000923,3.19e-10,560;UBERON:0010316,3.19e-10,560;UBERON:0005291,3.19e-10,560;UBERON:0006598,3.19e-10,560;UBERON:0010317,3.19e-10,560;UBERON:0002532,3.19e-10,560;UBERON:0003296,3.40e-10,4;UBERON:0010133,3.40e-10,4;UBERON:0005423,7.88e-10,581;UBERON:0002784,8.44e-10,4;UBERON:0001870,2.80e-09,3;UBERON:0005383,9.58e-09,3;UBERON:0005382,9.58e-09,3;UBERON:0000988,2.14e-08,3;UBERON:0002240,2.25e-08,3;UBERON:0005174,2.25e-08,3;UBERON:0001137,2.25e-08,3;UBERON:0001896,7.16e-08,3;UBERON:0005290,7.16e-08,3;UBERON:0010096,7.16e-08,3;UBERON:0002771,8.80e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.43483184557268,0.410623275218653,1.50651167513763,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.69716365721711,4.25010325563019,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.8193806893521,23.4251736943719,9.27946575333234,7.37071567471135,11.4828975297569,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890894042497916,0,7.95318118213038,16.8803299692615,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0.0986434056369336,0,0,4.84666373047609,8.25636073640476,15.9691038400955,0,0,0,0,0,0,0,0,0,17.7148277162768,8.20055782652774,47.3003382582958,64.2465500200415,24.2349047541909,4.60709334023342,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16388639742091,0,0,1.83309043480088,0,0,0,4.38107364374401,0,4.68528891450678,0,0,0,0,2.41981432097328,42.5441138666381,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0,0,0,0,0,0,0.451961481561065,0,0,16.4608069485285,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,7.20504346451747,8.35122811241158,0,0.429765441419957,0,0.279282401272254,0.458320848023367,0,0,0.429226048136571,0,0.335917362433631,0,0,0,0,0,0.0984274815147488,0,1.59045937961861,9.39803502169872,0,0,0.415440338029185,0,0,12.7574068981852,0,0,0.419636705079985,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,0,5.94701599263133,6.34716488364912,0,0,0,4.87333345808964,0,0,0,0,0,0,0,0,0,0,11.5188863395708,14.7651780531375,20.4061217051595,1.72022758707021,6.98853024682169,3.35320575883471,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.047473242001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.539124056983409,0,2.29340240203229,0,0,0,0,0,0,0,0,0,10.4693636907229,11.3357261060468,17.5597244962866,7.79442184114869,51.9267694216739,4.35690690524573,14.3713324612347,4.28308260777463,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,12.4269155697846,12.4972495778216,28.7294647136646,10.2733612514129,60.7142038010224,0,3.47347824872506,0,0,1.07140367175657,1.3451348888753,7.89055285507621,14.3427180551317,0,0,0,8.90403501996495,7.03768677122485,0,0,0.39246546425257,6.44173918655608,0,10.9579046461139,0,0,0.500335809236594,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.33883824611688,0,0,0.0771741581079447,0.437119121007915,0,0,0,7.26341328325297,4.45569600490629,8.8757702792514,0,0,0,0,0,0,0,0.730336388246517,0,2.15009374727177,0.788857810965923,4.6234213329822,40.5806142016551,2.645134202577,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0.803892390468535,3.31667775783512,8.37807266481351,0,1.42838658878244,0,0,0,0,0,0,0.342233301085281,0,0.573777643141411,1.33064142618405,0,0,0,0,0,1.1001729976458,1.22068853494722,0,1.00636896795513,0 | |||
|short_description=p5@DMD | |||
}} |
Revision as of 05:12, 23 January 2014
Short description: | p5@DMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_DMD_5end |
Coexpression cluster: | C335_cerebellum_parietal_occipital_temporal_duodenum_brain_medial |
Association with transcript: | 0bp_to_ENST00000343523, ENST00000359836, ENST00000378707, ENST00000474231, ENST00000541735, NM_004013, NM_004020, NM_004021, NM_004022, NM_004023, uc004dcr.1, uc004dcs.1, uc004dct.1, uc004dcu.1, uc004dcv.1_5end |
EntrezGene: | DMD |
HGNC: | 2928 |
UniProt: | E7EQR9F8VX32E7EQS5E7ESB2F5GZY3A1L0U9P11532Q8N754A7E212Q59HC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.55e-08 | 8 |