FFCP PHASE1:Hg19::chr5:138210977..138210999,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19409 | |||
|TSSclassifier=strong | |||
|UniProt=O43300,E5RHE5 | |||
|association_with_transcript=0bp_to_ENST00000274711,ENST00000521094_5end | |||
|coexpression_cluster_id=C257 | |||
|description=CAGE_peak_2_at_LRRTM2_5end | |||
|id=chr5:138210977..138210999,- | |||
|ontology_enrichment_celltype=CL:0002319!5.30e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002605;4.22e-07;3!CL:0002319;5.42e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.90e-08,8;CL:0002605,3.37e-07,3;CL:0002319,5.18e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.57e-20;82!UBERON:0006215;1.36e-07;3!UBERON:0006241;1.77e-07;3!UBERON:0003057;1.77e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.75e-62!94;UBERON:0001016!8.75e-62!94;UBERON:0005743!7.63e-61!86;UBERON:0001017!2.55e-59!82;UBERON:0001049!7.40e-53!57;UBERON:0005068!7.40e-53!57;UBERON:0006241!7.40e-53!57;UBERON:0007135!7.40e-53!57;UBERON:0000955!2.54e-51!69;UBERON:0006238!2.54e-51!69;UBERON:0002616!9.76e-46!59;UBERON:0003075!2.69e-45!86;UBERON:0007284!2.69e-45!86;UBERON:0002346!5.42e-45!90;UBERON:0002780!1.41e-43!41;UBERON:0001890!1.41e-43!41;UBERON:0006240!1.41e-43!41;UBERON:0003080!3.65e-42!42;UBERON:0001893!3.58e-38!34;UBERON:0002020!4.23e-38!34;UBERON:0003528!4.23e-38!34;UBERON:0000153!2.68e-37!129;UBERON:0007811!2.68e-37!129;UBERON:0000033!4.36e-37!123;UBERON:0002791!5.65e-37!33;UBERON:0000924!2.16e-36!173;UBERON:0006601!2.16e-36!173;UBERON:0001869!3.76e-36!32;UBERON:0003056!3.87e-36!61;UBERON:0004121!4.96e-36!169;UBERON:0000956!3.38e-28!25;UBERON:0000203!3.38e-28!25;UBERON:0002619!2.17e-25!22;UBERON:0007023!4.40e-24!115;UBERON:0001950!3.56e-23!20;UBERON:0000475!2.71e-12!365;UBERON:0003076!1.26e-11!15;UBERON:0003057!1.26e-11!15;UBERON:0002420!2.86e-11!9;UBERON:0007245!2.86e-11!9;UBERON:0010009!2.86e-11!9;UBERON:0010011!2.86e-11!9;UBERON:0000454!2.86e-11!9;UBERON:0002308!3.15e-11!9;UBERON:0000125!3.15e-11!9;UBERON:0000064!3.15e-10!219;UBERON:0000025!3.79e-10!194;UBERON:0004111!8.85e-10!241;UBERON:0004732!9.40e-10!13;UBERON:0000477!1.42e-09!286;UBERON:0009663!3.73e-09!7;UBERON:0004733!7.93e-09!12;UBERON:0002028!7.93e-09!12;UBERON:0007277!7.93e-09!12;UBERON:0000200!1.26e-08!6;UBERON:0001871!3.93e-08!7;UBERON:0000480!4.74e-08!626;UBERON:0000467!1.05e-07!625;UBERON:0000468!1.07e-07!659;UBERON:0000483!1.26e-07!309;UBERON:0001872!1.75e-07!5;UBERON:0002021!2.19e-07!5;UBERON:0000119!2.42e-07!312;UBERON:0002298!2.88e-07!8;UBERON:0000349!4.12e-07!5;UBERON:0001894!7.86e-07!7;UBERON:0006222!7.86e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.61e-65;34!UBERON:0003528;9.74e-65;34!UBERON:0002020;9.74e-65;34!UBERON:0001869;1.07e-64;32!UBERON:0002791;2.54e-64;32!UBERON:0002780;1.46e-58;41!UBERON:0001890;1.46e-58;41!UBERON:0000956;1.19e-55;25!UBERON:0000203;1.19e-55;25!UBERON:0000073;8.04e-54;53!UBERON:0002616;8.04e-54;53!UBERON:0002619;4.46e-50;22!UBERON:0001950;1.24e-45;20!UBERON:0001017;2.95e-41;75!UBERON:0000955;2.50e-39;68!UBERON:0001016;9.69e-36;83!UBERON:0002420;4.52e-21;9!UBERON:0007245;4.52e-21;9!UBERON:0010009;4.52e-21;9!UBERON:0010011;4.52e-21;9!UBERON:0000454;4.52e-21;9!UBERON:0000125;5.22e-21;9!UBERON:0002308;5.22e-21;9!UBERON:0009663;7.58e-17;7!UBERON:0004732;4.66e-16;13!UBERON:0000200;9.77e-16;6!UBERON:0004733;2.97e-14;12!UBERON:0002028;2.97e-14;12!UBERON:0002298;1.06e-13;6!UBERON:0011216;1.28e-13;132!UBERON:0001872;2.00e-13;5!UBERON:0002021;2.96e-13;5!UBERON:0001871;7.08e-13;6!UBERON:0007023;1.18e-12;114!UBERON:0000349;1.21e-12;5!UBERON:0002784;3.25e-11;4!UBERON:0000369;7.28e-11;4!UBERON:0002435;7.28e-11;4!UBERON:0000204;7.28e-11;4!UBERON:0001894;1.65e-09;7!UBERON:0002680;6.13e-09;9!UBERON:0001895;6.13e-09;9!UBERON:0001870;8.04e-09;3!UBERON:0005383;1.76e-08;3!UBERON:0005382;1.76e-08;3!UBERON:0010314;3.06e-08;132!UBERON:0000988;7.43e-08;3!UBERON:0001896;1.63e-07;3!UBERON:0005290;1.63e-07;3!UBERON:0002240;1.77e-07;3!UBERON:0005174;1.77e-07;3!UBERON:0001137;1.77e-07;3!UBERON:0001905;9.43e-07;2!UBERON:0002757;9.43e-07;2!UBERON:0010134;9.43e-07;2!UBERON:0005408;9.43e-07;2!UBERON:0001899;9.43e-07;2!UBERON:0004121;9.49e-07;165 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.24e-104,89;UBERON:0001017,6.89e-103,81;UBERON:0001049,8.47e-103,56;UBERON:0005068,8.47e-103,56;UBERON:0006241,8.47e-103,56;UBERON:0007135,8.47e-103,56;UBERON:0000073,1.77e-96,53;UBERON:0002616,1.77e-96,53;UBERON:0000955,2.98e-88,68;UBERON:0006238,2.98e-88,68;UBERON:0002780,1.24e-83,41;UBERON:0001890,1.24e-83,41;UBERON:0003080,1.24e-83,41;UBERON:0006240,1.24e-83,41;UBERON:0003075,2.17e-77,82;UBERON:0007284,2.17e-77,82;UBERON:0001893,5.32e-76,34;UBERON:0003528,7.46e-76,34;UBERON:0002020,7.46e-76,34;UBERON:0002346,3.99e-73,86;UBERON:0001869,6.60e-72,32;UBERON:0002791,1.78e-71,32;UBERON:0003056,1.43e-61,61;UBERON:0010371,5.77e-58,104;UBERON:0000956,8.52e-56,25;UBERON:0000203,8.52e-56,25;UBERON:0004121,3.61e-52,171;UBERON:0000924,3.61e-52,171;UBERON:0006601,3.61e-52,171;UBERON:0002619,4.06e-50,22;UBERON:0001950,1.23e-45,20;UBERON:0010314,1.33e-44,132;UBERON:0011216,3.19e-40,223;UBERON:0007023,3.49e-40,114;UBERON:0000025,2.18e-22,192;UBERON:0002420,4.92e-21,9;UBERON:0007245,4.92e-21,9;UBERON:0010009,4.92e-21,9;UBERON:0010011,4.92e-21,9;UBERON:0000454,4.92e-21,9;UBERON:0000125,5.96e-21,9;UBERON:0002308,5.96e-21,9;UBERON:0003076,8.94e-20,15;UBERON:0003057,8.94e-20,15;UBERON:0009663,8.66e-17,7;UBERON:0004732,4.35e-16,13;UBERON:0000200,9.90e-16,6;UBERON:0004111,3.66e-15,240;UBERON:0004733,2.83e-14,12;UBERON:0002028,2.83e-14,12;UBERON:0007277,2.83e-14,12;UBERON:0002298,1.07e-13,6;UBERON:0001872,1.91e-13,5;UBERON:0002021,2.99e-13,5;UBERON:0001871,7.01e-13,6;UBERON:0000349,1.05e-12,5;UBERON:0002784,3.34e-11,4;UBERON:0000483,6.37e-11,306;UBERON:0000369,8.25e-11,4;UBERON:0002435,8.25e-11,4;UBERON:0000204,8.25e-11,4;UBERON:0010082,8.25e-11,4;UBERON:0000119,1.10e-10,309;UBERON:0001894,1.70e-09,7;UBERON:0006222,1.70e-09,7;UBERON:0002680,5.82e-09,9;UBERON:0001895,5.82e-09,9;UBERON:0010092,5.82e-09,9;UBERON:0001870,8.47e-09,3;UBERON:0005383,1.99e-08,3;UBERON:0005382,1.99e-08,3;UBERON:0000988,7.43e-08,3;UBERON:0001896,1.65e-07,3;UBERON:0005290,1.65e-07,3;UBERON:0010096,1.65e-07,3;UBERON:0002240,1.81e-07,3;UBERON:0005174,1.81e-07,3;UBERON:0001137,1.81e-07,3;UBERON:0000923,3.73e-07,560;UBERON:0010316,3.73e-07,560;UBERON:0005291,3.73e-07,560;UBERON:0006598,3.73e-07,560;UBERON:0010317,3.73e-07,560;UBERON:0002532,3.73e-07,560;UBERON:0002050,5.55e-07,564;UBERON:0000922,8.71e-07,592;UBERON:0001905,9.43e-07,2;UBERON:0002757,9.43e-07,2;UBERON:0010134,9.43e-07,2;UBERON:0005408,9.43e-07,2;UBERON:0001899,9.43e-07,2;UBERON:0005423,9.47e-07,581 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0,0,0,0,0.369363174230364,0,0,7.15589967827642,1.91624195102038,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0.852449501065388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,1.45990461090791,0.567208902984407,0.221729397462564,0.263504357079378,1.57174890597255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0.33472061276467,0,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0.204154171254893,0.491337269247072,0.206651562351531,0,0,0,0,0,0,0,0.877955241761676,0,0,0,0.179389635688862,0,0.211931901159562,0,0.412210116953756,0,0,0.168776332241266,0,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0.829288440122964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,2.89826012437692,0,0.433099343283221,0,0.380508304469197,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0.581267877027924,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.860099009147,35.1377605415579,17.785642693887,28.9803139028423,11.4828975297569,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.60818530127658,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.532685175939381,0.0821271560138091,0.519254429183621,0.116210378459959,0,0,0,0.803701137152247,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.650756789328606,0.309123034943167,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0.537101224341368,0,0,0.267096106940212,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,1.27281299170375,0,0.719489830333259,0,0.706874414074119,0,0,0,0,0,0,0.409499734223957,0.707027159768564,1.13008116620243,0,0,0,0.578775534266688,0.655894752046633,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0.296964680832639,0,13.9180670687282,12.9415863097672,0,0,0,0,0,0,1.1249555075237,0,0,0,0,0,0.0986434056369336,0,0,10.6626602070474,25.6039950926709,11.9768278800717,0,0,0,0,0,0,0,0,2.08349993919951,22.143534645346,15.5569405826776,9.15490417902499,11.9425600725723,2.95547618953547,15.5763631979321,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,7.68372915979718,0,18.5068912123018,0,0,0,0,0,14.997565319894,0.31593289814244,2.70582154946087,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38971111170799,0.137041924646751,0.19871461170299,30.7057360386012,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.418411385249333,0,0.288950589901519,13.2092463516154,7.39289046016762,0,0.859530882839914,14.7216918396416,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,15.9045937961861,13.7565440172691,0,0,0,0,0,26.9120535995049,0,0,0.472091293214983,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0.170388021785422,0.113312091520126,0,0,15.6432377197476,6.47939748539181,0,0,0,0.314408610199332,0.414239055347196,0,0.988058159489721,0,0,0,0,0,0,0,14.1770908794718,28.5541459870594,28.1679594089625,9.74795632673121,5.10273637069521,4.40884460883822,6.64073447693908,0.124980407962107,0,0,0,0,0,0.149254802886874,0,1.10961172300523,0.189403005275089,0.50313580350515,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,3.8436227788192,0,0,25.0247769434633,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,6.65050730778989,2.80344509631373,0,5.35127227140868,0,0.212574920101683,0.247871528518004,0,0,0,0.80057074828547,0.352675943690684,0.3062454773532,24.9209393374263,26.9223495018611,16.4422874828866,18.6655891459087,21.6781658750678,15.2837527945922,25.5131520098325,5.71077681036618,0,0,0,0,0,1.3807198521202,0,0,0,0,0,0,0,20.7340384778472,26.5566553528708,26.2492231556504,17.9466742848756,22.425967169747,0,0,0,0,44.4632523778978,106.265656221148,0.606965604236632,0,0.443511850813194,0,0,8.83606528698812,15.7196928815209,0,0,0,15.0830966319362,0,2.73947616152849,0,0,2.21577286947635,0,0,0,0,0,0,0,0,0,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.769583617218004,0,0.231522474323834,1.5299169235277,0,0,0,9.03018948728748,2.67341760294377,6.7624916413344,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,4.58686666084644,0,15.4340682733376,12.6541700198709,1.0580536810308,1.11598505450025,0,0.432626562123789,0,0,0,0,0,0,0,0,0.803892390468535,22.387574865387,12.1016605158417,0,0.23806443146374,0.193766729508018,0.186224142887574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@LRRTM2 | |||
}} |
Revision as of 07:42, 22 January 2014
Short description: | p2@LRRTM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRTM2_5end |
Coexpression cluster: | C257_pineal_insula_frontal_occipital_temporal_medial_paracentral |
Association with transcript: | 0bp_to_ENST00000274711, ENST00000521094_5end |
EntrezGene: | LRRTM2 |
HGNC: | 19409 |
UniProt: | O43300E5RHE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.90e-08 | 8 |
astrocyte of the cerebral cortex | 3.37e-07 | 3 |
neural cell | 5.18e-07 | 25 |